Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

4988604 .. 4991135

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTTCTCTTCAAATCTTCAAGTCCACCCTCTCTCCCAGCCCTGTTTCCCAGTCAAGTTTCTCCGGAAAATCCAGGTGGGTCTTGTCGGAAATTCAGTCCAGGAATAACAGTATCATCAGGCTCTCTGGTTATTATTACTTGAGGAGGAGAAGGTTCAGGGTCTGCTGCAAAGCTCAAGAATCAGACAACAAAAGCAATGGGGAAGAACCACCCGAGTCATTGTTTATGAAGGAATTGAGGAGGAGGGGAATGAGTCCGACTTCTTTGCTTGAGGAAGCAGAGAGGACTGAGCATGGAATAAATGATGAGAGGGGCAAAGGAGATAGAGGTTTCTCAAATAGAAATGCGGTCTCAACTGAAGTGGAGAAAAGCCTGGCTAATCAAAGGGAGCGATCCATGCAGTTGAACAGTGAAGGCCTCGAGGGGTTGATCCCTCGAGGAAGACTCTTGCTGACGCTTGGAGGGACATTCTTCTTGGCATTTTGGCCATTTATGGTCATAAGTGTAGCACTATTCTCTGCTCTCTATTTCTACTTTGGACCAACATTTATCCATGATGCAAACAACAGAATATCACCACCTCAATACATTGATCCGTATGAACTTCTGGAAGATGATAGGATTTCTCAAATAGCCCCTCGTGTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

217

Amino Acids

24.83

Weight (kDa)

9.32

Isoelectric Point (pI)

66.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	2 cut(s)	422, 438
AccIII	TCCGGA	1 cut(s)	65
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	3 cut(s)	390, 427, 590
AcoI	YGGCCR	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	14, 22, 409
AjnI	CCWGG	3 cut(s)	74, 101, 375
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	390, 427, 590
AlwNI	CAGNNNCTG	1 cut(s)	165
Ama87I	CYCGRG	3 cut(s)	215, 422, 438
Aor13HI	TCCGGA	1 cut(s)	65
AoxI	GGCC	2 cut(s)	418, 488
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	570
AvaI	CYCGRG	3 cut(s)	215, 422, 438
AvaII	GGWCC	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	490
BauI	CACGAG	1 cut(s)	642
BbsI	GAAGAC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	3 cut(s)	76, 103, 377
BcoDI	GTCTC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	3 cut(s)	76, 103, 377
Bme18I	GGWCC	1 cut(s)	542
BmeT110I	CYCGRG	3 cut(s)	215, 422, 438
BmgT120I	GGNCC	1 cut(s)	542
BmrFI	CCNGG	3 cut(s)	76, 103, 377
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	451
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BpuEI	CTTGAG	3 cut(s)	162, 163, 293
BsaI	GGTCTC	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	205
BseAI	TCCGGA	1 cut(s)	65
BseBI	CCWGG	3 cut(s)	76, 103, 377
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	4 cut(s)	160, 163, 256, 259
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	420, 490
BsiHKCI	CYCGRG	3 cut(s)	215, 422, 438
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	420, 490
Bso31I	GGTCTC	1 cut(s)	358
BsoBI	CYCGRG	3 cut(s)	215, 422, 438
Bsp13I	TCCGGA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	395, 432, 595
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	2 cut(s)	420, 490
BspCNI	CTCAG	1 cut(s)	283
BspEI	TCCGGA	1 cut(s)	65
BspPI	GGATC	3 cut(s)	390, 427, 590
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	395, 432, 595
BssSI	CACGAG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	76, 103, 377
Bst4CI	ACNGT	2 cut(s)	113, 413
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	291
BstKTI	GATC	3 cut(s)	398, 435, 598
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	395, 432, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	3 cut(s)	76, 103, 377
BstSCI	CCNGG	3 cut(s)	74, 101, 375
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	420, 490
BtsIMutI	CAGTG	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	542
CseI	GACGC	1 cut(s)	466
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	3 cut(s)	296, 400, 557
CviJI	RGCY	9 cut(s)	5, 42, 124, 176, 375, 380, 420, 490, 638
CviKI_1	RGCY	9 cut(s)	5, 42, 124, 176, 375, 380, 420, 490, 638
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	3 cut(s)	397, 434, 597
DpnII	GATC	3 cut(s)	395, 432, 595
EaeI	YGGCCR	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	3 cut(s)	215, 422, 438
EcoRII	CCWGG	3 cut(s)	74, 101, 375
FaeI	CATG	3 cut(s)	299, 403, 560
FaiI	YATR	7 cut(s)	230, 297, 401, 497, 503, 558, 603
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	3 cut(s)	295, 399, 556
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	420, 490
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	299, 403, 560
HinfI	GANTC	4 cut(s)	182, 218, 256, 447
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	570
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	3 cut(s)	91, 187, 261
Hpy188III	TCNNGA	3 cut(s)	66, 179, 611
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	147, 226, 410
HpyCH4III	ACNGT	2 cut(s)	113, 413
HpyCH4V	TGCA	3 cut(s)	171, 403, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	299, 403, 560
Kpn2I	TCCGGA	1 cut(s)	65
Kzo9I	GATC	3 cut(s)	395, 432, 595
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	550
MalI	GATC	3 cut(s)	397, 434, 597
MboI	GATC	3 cut(s)	395, 432, 595
MboII	GAAGA	5 cut(s)	10, 218, 456, 466, 626
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	2 cut(s)	93, 236
MluNI	TGGCCA	1 cut(s)	490
MlyI	GAGTC	3 cut(s)	227, 265, 441
MmeI	TCCRAC	2 cut(s)	69, 284
Mox20I	TGGCCA	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	490
Msp20I	TGGCCA	1 cut(s)	490
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	3 cut(s)	76, 103, 377
MvaI	CCWGG	3 cut(s)	76, 103, 377
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	3 cut(s)	395, 432, 595
NlaIII	CATG	3 cut(s)	299, 403, 560
PaeR7I	CTCGAG	2 cut(s)	422, 438
PceI	AGGCCT	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	3 cut(s)	226, 264, 441
PpsI	GAGTC	3 cut(s)	226, 264, 441
Psp6I	CCWGG	3 cut(s)	74, 101, 375
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	3 cut(s)	74, 101, 375
PspPI	GGNCC	1 cut(s)	542
PspXI	VCTCGAGB	2 cut(s)	422, 438
PstNI	CAGNNNCTG	1 cut(s)	165
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	3 cut(s)	395, 432, 595
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	3 cut(s)	227, 265, 441
ScrFI	CCNGG	3 cut(s)	76, 103, 377
SetI	ASST	5 cut(s)	80, 158, 178, 334, 586
SfaNI	GCATC	1 cut(s)	550
Sfr274I	CTCGAG	2 cut(s)	422, 438
SinI	GGWCC	1 cut(s)	542
SlaI	CTCGAG	2 cut(s)	422, 438
SmlI	CTYRAG	5 cut(s)	142, 177, 272, 422, 438
SmoI	CTYRAG	5 cut(s)	142, 177, 272, 422, 438
Sse9I	AATT	2 cut(s)	93, 236
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	350
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	74, 101, 375
TaaI	ACNGT	2 cut(s)	113, 413
TaqI	TCGA	2 cut(s)	423, 439
TasI	AATT	2 cut(s)	93, 236
TfiI	GAWTC	1 cut(s)	182
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	245, 618
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	93
XhoI	CTCGAG	2 cut(s)	422, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.