Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

258611 .. 261853

Gene Structure 3243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G003900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGCTGCTTCGGCTGTTGTGAAGATGATGATATGCATAAAGCGACCGACCATGGAGGTCCATACATGGTCAAAAACCCAGCAGGAAGTGAGGGAAGCCATCACGCCTCAGGAACTGCACCTAGGGGTGCTCAAGCTGTAAAGGTCCAGCCTATTGAAGTTCCTACTATACCAATAGATGAACTAAAGGAAATTACCGATGGCTTTGGGACAAGTGCTTTGATTGGAGAGGGTTCATATGGAAGAGTATACTATGGCGTACTCAAAAGTGGGCAGCATGCAGCAATCAAGAAGTTAGATGCCAGCAAACAACCTGACGACGAATTTCTGGCGCAGGTTTCTATGGTATCAAGGCTGAAACATGACAATTTTGTTCAATTGCTTGGTTATTGTGTTGATGGGAGTTCCCGTGTTCTTGCCTATGAGTTTGCATCTAATGGATCTCTTCATGATATTCTACATGGAAGGAAAGGTGTTAAAGGAGCACAACCTGGTCCAGTTTTGTCATGGGCACAGCGTGTTAAAATTGCCGTGGGTGCTGCAAAAGGGCTCGAGTATTTGCACGAAAAGGCTGATCCCCACATCATTCATCGCGACATCAAGTCTAGCAATGTGCTAATATTTGATGACGATGTTGCTAAGATTGCGGACTTTGATTTGTCCAATCAAGCTCCTGATAATGCAGCACGTCTTCACTCCACTCGTGTGCTAGGAACTTTTGGTTATCATGCCCCTGAATATGCAATGACTGGACAGTTGAATGCCAAGAGTGATGTTTACAGTTTTGGTGTTGTTCTGCTTGAACTTTTGACTGGAAGAAAACCCGTTGATCATACATTACCAAGGGGACAGCAGAGTCTAGTAACATGGGCTACACCAAAACTCAGTGAAGACAAAGTTAGGCAGTGCATTGATTCAAGACTAGGAGGAGAATACCCACCAAAGGCGGTTGCAAAGATGGCTGCAGTTGCTGCCTTGTGTGTGCAATATGAAGCTGATTTCCGCCCAAACATGAGCATTGTTGTCAAAGCTCTCCAACCCCTGTTAAACGCTCGGCAGCATGGACCCACAGGGGAAGTACCAAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

364

Amino Acids

39.18

Weight (kDa)

6.56

Isoelectric Point (pI)

26.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	855
Acc36I	ACCTGC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	594
AciI	CCGC	3 cut(s)	647, 947, 1003
AclWI	GGATC	2 cut(s)	448, 569
AcsI	RAATTY	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	2 cut(s)	261, 1080
AfiI	CCNNNNNNNGG	1 cut(s)	943
AgsI	TTSAA	5 cut(s)	158, 377, 760, 803, 918
AhdI	GACNNNNNGTC	1 cut(s)	601
AjiI	CACGTC	1 cut(s)	689
AjnI	CCWGG	1 cut(s)	490
AleI	CACNNNNGTG	1 cut(s)	704
AluBI	AGCT	5 cut(s)	6, 137, 671, 995, 1031
AluI	AGCT	5 cut(s)	6, 137, 671, 995, 1031
Alw21I	GWGCWC	2 cut(s)	133, 487
AlwI	GGATC	2 cut(s)	448, 569
AlwNI	CAGNNNCTG	2 cut(s)	116, 971
Ama87I	CYCGRG	1 cut(s)	551
ApeKI	GCWGC	8 cut(s)	6, 274, 281, 539, 683, 962, 971, 1057
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspA2I	CCTAGG	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	4 cut(s)	59, 145, 494, 1064
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	4 cut(s)	59, 145, 494, 1064
AvrII	CCTAGG	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	552
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	2 cut(s)	683, 897
Bbv12I	GWGCWC	2 cut(s)	133, 487
BbvI	GCAGC	7 cut(s)	286, 293, 526, 695, 949, 958, 1069
BccI	CCATC	4 cut(s)	108, 194, 392, 952
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	829
BfaI	CTAG	5 cut(s)	123, 606, 710, 860, 923
BfmI	CTRYAG	1 cut(s)	963
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	8 cut(s)	7, 275, 282, 540, 684, 963, 972, 1058
BlnI	CCTAGG	1 cut(s)	122
BlsI	GCNGC	8 cut(s)	8, 276, 283, 541, 685, 964, 973, 1059
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	4 cut(s)	59, 145, 494, 1064
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	689
BmgT120I	GGNCC	4 cut(s)	59, 145, 494, 1064
BmiI	GGNNCC	1 cut(s)	1066
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	289, 440
BpiI	GAAGAC	2 cut(s)	683, 897
BpuEI	CTTGAG	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	52, 122, 531, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	943
Bse1I	ACTGG	3 cut(s)	497, 754, 817
Bse21I	CCTNAGG	1 cut(s)	109
Bse3DI	GCAATG	2 cut(s)	616, 750
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	4 cut(s)	52, 122, 531, 842
BseLI	CCNNNNNNNGG	1 cut(s)	943
BseMI	GCAATG	2 cut(s)	616, 750
BseMII	CTCAG	2 cut(s)	123, 898
BseNI	ACTGG	3 cut(s)	497, 754, 817
BseRI	GAGGAG	1 cut(s)	942
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	7 cut(s)	286, 293, 526, 695, 949, 958, 1069
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	2 cut(s)	133, 487
BsiHKCI	CYCGRG	1 cut(s)	551
BslFI	GGGAC	2 cut(s)	223, 861
BslI	CCNNNNNNNGG	1 cut(s)	943
BsmFI	GGGAC	2 cut(s)	223, 861
BsmI	GAATGC	1 cut(s)	766
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	4 cut(s)	133, 487, 514, 552
Bsp143I	GATC	3 cut(s)	440, 574, 829
Bsp19I	CCATGG	1 cut(s)	52
Bsp68I	TCGCGA	1 cut(s)	594
BspACI	CCGC	3 cut(s)	647, 947, 1003
BspCNI	CTCAG	2 cut(s)	122, 897
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	1066
BspMAI	CTGCAG	1 cut(s)	967
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	448, 569
BsrDI	GCAATG	2 cut(s)	616, 750
BsrI	ACTGG	3 cut(s)	497, 754, 817
BssECI	CCNNGG	4 cut(s)	52, 122, 531, 842
BssMI	GATC	3 cut(s)	440, 574, 829
BssNAI	GTATAC	1 cut(s)	250
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	3 cut(s)	52, 122, 842
Bst1107I	GTATAC	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	756, 782
Bst6I	CTCTTC	2 cut(s)	238, 450
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	279, 304
BstDEI	CTNAG	3 cut(s)	109, 639, 884
BstDSI	CCRYGG	2 cut(s)	52, 531
BstFNI	CGCG	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	443, 577, 832
BstMBI	GATC	3 cut(s)	440, 574, 829
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 536, 644, 959, 968, 971
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	1 cut(s)	514
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	7 cut(s)	286, 293, 526, 695, 949, 958, 1069
BstV2I	GAAGAC	2 cut(s)	683, 897
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BstZ17I	GTATAC	1 cut(s)	250
Bsu36I	CCTNAGG	1 cut(s)	109
BtgI	CCRYGG	2 cut(s)	52, 531
BtgZI	GCGATG	1 cut(s)	575
BtrI	CACGTC	1 cut(s)	689
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	2 cut(s)	892, 911
BtuMI	TCGCGA	1 cut(s)	594
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	279, 304
CaiI	CAGNNNCTG	2 cut(s)	116, 971
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	4 cut(s)	59, 145, 494, 1064
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	260, 1079
CviQI	GTAC	2 cut(s)	260, 1079
DdeI	CTNAG	3 cut(s)	109, 639, 884
DpnI	GATC	3 cut(s)	442, 576, 831
DpnII	GATC	3 cut(s)	440, 574, 829
DraIII	CACNNNGTG	1 cut(s)	518
DrdI	GACNNNNNNGTC	1 cut(s)	855
DriI	GACNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	855
Eam1104I	CTCTTC	2 cut(s)	238, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	601
EarI	CTCTTC	2 cut(s)	238, 450
EciI	GGCGGA	1 cut(s)	992
Eco130I	CCWWGG	3 cut(s)	52, 122, 842
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	4 cut(s)	59, 145, 494, 1064
Eco81I	CCTNAGG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	3 cut(s)	52, 122, 842
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	3 cut(s)	52, 122, 842
FaqI	GGGAC	2 cut(s)	223, 861
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	8 cut(s)	7, 275, 282, 540, 684, 963, 972, 1058
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	8 cut(s)	7, 275, 282, 540, 684, 963, 972, 1058
FspBI	CTAG	5 cut(s)	123, 606, 710, 860, 923
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	8 cut(s)	7, 275, 282, 540, 684, 963, 972, 1058
GsaI	CCCAGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	2 cut(s)	856, 914
Hpy166II	GTNNAC	2 cut(s)	250, 778
Hpy188III	TCNNGA	6 cut(s)	111, 289, 449, 593, 674, 918
Hpy8I	GTNNAC	2 cut(s)	250, 778
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	459
HpyCH4III	ACNGT	2 cut(s)	756, 782
HpyCH4IV	ACGT	1 cut(s)	688
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 536, 644, 959, 968, 971
HpyF3I	CTNAG	3 cut(s)	109, 639, 884
HpySE526I	ACGT	1 cut(s)	688
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	3 cut(s)	440, 574, 829
LmnI	GCTCC	2 cut(s)	482, 676
Lsp1109I	GCAGC	7 cut(s)	286, 293, 526, 695, 949, 958, 1069
LweI	GCATC	2 cut(s)	289, 440
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	5 cut(s)	123, 606, 710, 860, 923
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	1 cut(s)	862
MalI	GATC	3 cut(s)	442, 576, 831
MboI	GATC	3 cut(s)	440, 574, 829
MboII	GAAGA	6 cut(s)	35, 255, 437, 683, 828, 902
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	4 cut(s)	133, 487, 514, 552
MluCI	AATT	5 cut(s)	192, 323, 367, 377, 525
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	1060
MnlI	CCTC	5 cut(s)	50, 85, 118, 223, 920
Mph1103I	ATGCAT	1 cut(s)	39
MseI	TTAA	3 cut(s)	477, 522, 1046
MslI	CAYNNNNRTG	1 cut(s)	704
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	6 cut(s)	12, 536, 644, 959, 968, 971
NcoI	CCATGG	1 cut(s)	52
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	3 cut(s)	440, 574, 829
NlaIV	GGNNCC	1 cut(s)	1066
NmeAIII	GCCGAG	1 cut(s)	1033
NruI	TCGCGA	1 cut(s)	594
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	704
PaeI	GCATGC	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	448
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	1 cut(s)	914
PkrI	GCNGC	8 cut(s)	8, 276, 283, 541, 685, 964, 973, 1059
PleI	GAGTC	1 cut(s)	864
PpsI	GAGTC	1 cut(s)	864
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	1066
PspPI	GGNCC	4 cut(s)	59, 145, 494, 1064
PspXI	VCTCGAGB	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	967
PstNI	CAGNNNCTG	2 cut(s)	116, 971
PsuI	RGATCY	1 cut(s)	440
RruI	TCGCGA	1 cut(s)	594
RsaI	GTAC	2 cut(s)	261, 1080
RsaNI	GTAC	2 cut(s)	260, 1079
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	3 cut(s)	477, 522, 1046
SatI	GCNGC	8 cut(s)	7, 275, 282, 540, 684, 963, 972, 1058
Sau3AI	GATC	3 cut(s)	440, 574, 829
Sau96I	GGNCC	4 cut(s)	59, 145, 494, 1064
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	4 cut(s)	133, 487, 514, 552
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	289, 440
SfcI	CTRYAG	1 cut(s)	963
Sfr274I	CTCGAG	1 cut(s)	551
SinI	GGWCC	4 cut(s)	59, 145, 494, 1064
SlaI	CTCGAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	132, 551
SmoI	CTYRAG	2 cut(s)	132, 551
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	5 cut(s)	192, 323, 367, 377, 525
SsiI	CCGC	3 cut(s)	647, 947, 1003
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	5 cut(s)	123, 606, 710, 860, 923
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	3 cut(s)	52, 122, 842
TaaI	ACNGT	2 cut(s)	756, 782
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	1 cut(s)	552
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	5 cut(s)	192, 323, 367, 377, 525
TfiI	GAWTC	1 cut(s)	914
Tru1I	TTAA	3 cut(s)	477, 522, 1046
Tru9I	TTAA	3 cut(s)	477, 522, 1046
TscAI	CASTG	2 cut(s)	892, 911
TseI	GCWGC	8 cut(s)	6, 274, 281, 539, 683, 962, 971, 1057
TspDTI	ATGAA	5 cut(s)	195, 225, 437, 578, 1005
TspRI	CASTG	2 cut(s)	892, 911
VpaK11BI	GGWCC	4 cut(s)	59, 145, 494, 1064
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XhoI	CTCGAG	1 cut(s)	551
XmaJI	CCTAGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	5 cut(s)	123, 606, 710, 860, 923
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.