Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

31388663 .. 31392079

Gene Structure 3417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG273900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCTTTTTCTTTTTGTTTGTTTTGGGTATTTGACTTGCATTTGTTTTTTTGTTTTGTATATCTGTCACTGGTTTTATCAATTCAAGTTTTGGAATTCAAACCGAGTTGGGTTTCGTGACGCAGGAAATGAGGGGATTCATCATGATTCCGGTAGTGCGCCCAAAGGTGGTCAAGCCGTAAAGGCCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTGAAGGAAATTACAGATAACTTTGGGACAAGTGCCTTGATTGGGGAAGGTTCTTATGGAAGAGTATATTTTGGAGTACTTAAAAGCGGGGAGCAGGCAGCAATCAAGAAGCTCGATGCCAGCAAACAACCTGATGAGGAATATCTTGCGCAGGTTTCTATGGTATCACGGCTGAAAAATGATAATTTTGTTCAACTTCTTGGGTACTGCGTTGATGGGAGTTCTCGTGTTCTTGCCTATGAGTTTGCATCTAATGGATCTCTTCATGATATTCTACACGGAAGGAAAGGTGTCAAAGGAGCTCAACCTGGTCCTGTTCTAACTTGGGCACAGCGTGTTAAAATTGCAGTGGGTGCTGCAAGAGGACTCGAGTATCTACATGAAAAAGCGGTCCCCCATATCATTCATCGCGACATCAAGTCCAGCAATGTACTAATATTTGATGATGATGTTGCTAAGATTGCAGACTTTGATTTATCCAACCAAGCTCCTGATATGGCAGCACGTCTTCACTCCACTCGTGTTCTCGGAACCTTTGGTTATCATGCCCCAGAATATGCGATGACTGGACAGTTGAATGCCAAAAGTGATGTTTACAGTTTTGGTGTTGTCCTGCTAGAGCTTTTGACCGGAAGAAAACCTGTTGATCATACATTACCACGGGGACAGCAGAGCCTAGTGACATGGGTACTATATGTGTTGCTAATTATTTCTCATGCACCTGTTATCGGTCTCTTAGTTGTTAACATAGGAATATGCTCTTGTTCATATGAACCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

334

Amino Acids

36.78

Weight (kDa)

6.63

Isoelectric Point (pI)

23.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 291	2.9e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	87 - 291	9.9e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	364
AccII	CGCG	1 cut(s)	633
AciI	CCGC	3 cut(s)	203, 309, 611
AclWI	GGATC	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	4 cut(s)	300, 428, 654, 912
AfiI	CCNNNNNNNGG	3 cut(s)	167, 264, 950
AgsI	TTSAA	5 cut(s)	85, 99, 197, 416, 799
AhdI	GACNNNNNGTC	1 cut(s)	640
AjiI	CACGTC	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	6 cut(s)	223, 334, 524, 710, 844, 1002
AluI	AGCT	6 cut(s)	223, 334, 524, 710, 844, 1002
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	959
AlwI	GGATC	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	320, 578, 722
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	160, 373
AspS9I	GGNCC	3 cut(s)	184, 533, 613
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	533, 613
BaeGI	GKGCMC	1 cut(s)	553
BaeI	ACNNNNGTAYC	2 cut(s)	578, 611
BanII	GRGCYC	1 cut(s)	526
BauI	CACGAG	2 cut(s)	447, 741
BbsI	GAAGAC	1 cut(s)	722
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	3 cut(s)	332, 565, 734
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	2 cut(s)	161, 407
BciT130I	CCWGG	1 cut(s)	531
BclI	TGATCA	1 cut(s)	868
BcoDI	GTCTC	1 cut(s)	959
BfaI	CTAG	2 cut(s)	839, 899
BfuAI	ACCTGC	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	321, 579, 723
BlsI	GCNGC	3 cut(s)	322, 580, 724
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	2 cut(s)	533, 613
BmeRI	GACNNNNNGTC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	590
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	3 cut(s)	184, 533, 613
BmiI	GGNNCC	2 cut(s)	615, 754
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	2 cut(s)	328, 479
BpiI	GAAGAC	1 cut(s)	722
BsaI	GGTCTC	1 cut(s)	959
BsaJI	CCNNGG	1 cut(s)	881
BsaWI	WCCGGW	2 cut(s)	149, 851
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 264, 950
Bse1I	ACTGG	3 cut(s)	74, 212, 793
Bse3DI	GCAATG	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	881
BseLI	CCNNNNNNNGG	3 cut(s)	167, 264, 950
BseMI	GCAATG	1 cut(s)	655
BseNI	ACTGG	3 cut(s)	74, 212, 793
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	332, 565, 734
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	2 cut(s)	150, 852
BslFI	GGGAC	3 cut(s)	262, 599, 900
BslI	CCNNNNNNNGG	3 cut(s)	167, 264, 950
BsmAI	GTCTC	1 cut(s)	959
BsmFI	GGGAC	3 cut(s)	262, 599, 900
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	959
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	2 cut(s)	526, 553
Bsp143I	GATC	2 cut(s)	479, 868
Bsp68I	TCGCGA	1 cut(s)	633
BspACI	CCGC	3 cut(s)	203, 309, 611
BspANI	GGCC	1 cut(s)	185
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	2 cut(s)	142, 487
BspLI	GGNNCC	2 cut(s)	615, 754
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	959
BsrDI	GCAATG	1 cut(s)	655
BsrI	ACTGG	3 cut(s)	74, 212, 793
BssECI	CCNNGG	1 cut(s)	881
BssMI	GATC	2 cut(s)	479, 868
BssSI	CACGAG	2 cut(s)	447, 741
Bst2BI	CACGAG	2 cut(s)	447, 741
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	795, 821
Bst6I	CTCTTC	2 cut(s)	277, 489
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	318, 343
BstDEI	CTNAG	2 cut(s)	678, 958
BstDSI	CCRYGG	1 cut(s)	881
BstFNI	CGCG	1 cut(s)	633
BstHHI	GCGC	2 cut(s)	160, 373
BstKTI	GATC	2 cut(s)	482, 871
BstMAI	GTCTC	1 cut(s)	959
BstMBI	GATC	2 cut(s)	479, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 575, 683
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSLI	GKGCMC	1 cut(s)	553
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	332, 565, 734
BstV2I	GAAGAC	1 cut(s)	722
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	881
BtgZI	GCGATG	2 cut(s)	614, 797
BtrI	CACGTC	1 cut(s)	728
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	67, 576
BtuMI	TCGCGA	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	318, 343
CciI	TCATGA	2 cut(s)	142, 487
CfoI	GCGC	2 cut(s)	160, 373
Cfr13I	GGNCC	3 cut(s)	184, 533, 613
CseI	GACGC	1 cut(s)	128
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	4 cut(s)	299, 427, 653, 911
CviAII	CATG	6 cut(s)	143, 488, 602, 767, 906, 938
CviQI	GTAC	4 cut(s)	299, 427, 653, 911
DdeI	CTNAG	2 cut(s)	678, 958
DpnI	GATC	2 cut(s)	481, 870
DpnII	GATC	2 cut(s)	479, 868
DraIII	CACNNNGTG	1 cut(s)	557
DriI	GACNNNNNGTC	1 cut(s)	640
Eam1104I	CTCTTC	2 cut(s)	277, 489
Eam1105I	GACNNNNNGTC	1 cut(s)	640
EarI	CTCTTC	2 cut(s)	277, 489
Ecl136II	GAGCTC	1 cut(s)	524
Eco24I	GRGCYC	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	959
Eco47I	GGWCC	2 cut(s)	533, 613
Eco53kI	GAGCTC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	526
FaeI	CATG	6 cut(s)	146, 491, 605, 770, 909, 941
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	3 cut(s)	262, 599, 900
FatI	CATG	6 cut(s)	142, 487, 601, 766, 905, 937
FauI	CCCGC	1 cut(s)	302
FauNDI	CATATG	1 cut(s)	991
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	3 cut(s)	321, 579, 723
FriOI	GRGCYC	1 cut(s)	526
Fsp4HI	GCNGC	3 cut(s)	321, 579, 723
FspBI	CTAG	2 cut(s)	839, 899
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	2 cut(s)	159, 372
GluI	GCNGC	3 cut(s)	321, 579, 723
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	150, 852
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	160, 373
Hin1II	CATG	6 cut(s)	146, 491, 605, 770, 909, 941
Hin6I	GCGC	2 cut(s)	158, 371
HinP1I	GCGC	2 cut(s)	158, 371
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HinfI	GANTC	3 cut(s)	136, 146, 588
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	2 cut(s)	150, 852
Hpy166II	GTNNAC	2 cut(s)	817, 967
Hpy188I	TCNGA	1 cut(s)	752
Hpy188III	TCNNGA	6 cut(s)	116, 143, 328, 488, 632, 713
Hpy8I	GTNNAC	2 cut(s)	817, 967
HpyAV	CCTTC	3 cut(s)	220, 263, 498
HpyCH4III	ACNGT	2 cut(s)	795, 821
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	6 cut(s)	39, 470, 569, 581, 686, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 575, 683
HpyF3I	CTNAG	2 cut(s)	678, 958
HpySE526I	ACGT	1 cut(s)	727
Hsp92II	CATG	6 cut(s)	146, 491, 605, 770, 909, 941
HspAI	GCGC	2 cut(s)	158, 371
Ksp22I	TGATCA	1 cut(s)	868
KspAI	GTTAAC	1 cut(s)	967
Kzo9I	GATC	2 cut(s)	479, 868
LmnI	GCTCC	4 cut(s)	220, 313, 521, 715
Lsp1109I	GCAGC	3 cut(s)	332, 565, 734
LweI	GCATC	2 cut(s)	328, 479
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	2 cut(s)	839, 899
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	3 cut(s)	65, 116, 901
MalI	GATC	2 cut(s)	481, 870
MboI	GATC	2 cut(s)	479, 868
MboII	GAAGA	4 cut(s)	294, 476, 722, 867
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	2 cut(s)	526, 553
MluCI	AATT	6 cut(s)	80, 94, 231, 406, 564, 927
MlyI	GAGTC	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	726
MnlI	CCTC	4 cut(s)	124, 211, 352, 578
MseI	TTAA	3 cut(s)	303, 561, 966
MspI	CCGG	2 cut(s)	150, 852
MspR9I	CCNGG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	3 cut(s)	182, 575, 683
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	2 cut(s)	479, 868
NlaIII	CATG	6 cut(s)	146, 491, 605, 770, 909, 941
NlaIV	GGNNCC	2 cut(s)	615, 754
NmuCI	GTSAC	3 cut(s)	65, 116, 901
NruI	TCGCGA	1 cut(s)	633
NsbI	TGCGCA	1 cut(s)	372
PaeR7I	CTCGAG	1 cut(s)	590
PagI	TCATGA	2 cut(s)	142, 487
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	2 cut(s)	136, 146
PkrI	GCNGC	3 cut(s)	322, 580, 724
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
Psp124BI	GAGCTC	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	615, 754
PspPI	GGNCC	3 cut(s)	184, 533, 613
PspXI	VCTCGAGB	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	479
RruI	TCGCGA	1 cut(s)	633
RsaI	GTAC	4 cut(s)	300, 428, 654, 912
RsaNI	GTAC	4 cut(s)	299, 427, 653, 911
SacI	GAGCTC	1 cut(s)	526
SaqAI	TTAA	3 cut(s)	303, 561, 966
SatI	GCNGC	3 cut(s)	321, 579, 723
Sau3AI	GATC	2 cut(s)	479, 868
Sau96I	GGNCC	3 cut(s)	184, 533, 613
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	1 cut(s)	582
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	526, 553
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	2 cut(s)	328, 479
Sfr274I	CTCGAG	1 cut(s)	590
SinI	GGWCC	2 cut(s)	533, 613
SlaI	CTCGAG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	80, 94, 231, 406, 564, 927
SsiI	CCGC	3 cut(s)	203, 309, 611
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	2 cut(s)	839, 899
SstI	GAGCTC	1 cut(s)	526
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	795, 821
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	2 cut(s)	336, 591
TaqII	GACCGA	1 cut(s)	941
TasI	AATT	6 cut(s)	80, 94, 231, 406, 564, 927
TatI	WGTACW	2 cut(s)	298, 652
TfiI	GAWTC	2 cut(s)	136, 146
Tru1I	TTAA	3 cut(s)	303, 561, 966
Tru9I	TTAA	3 cut(s)	303, 561, 966
TscAI	CASTG	2 cut(s)	74, 576
TseFI	GTSAC	3 cut(s)	65, 116, 901
TseI	GCWGC	3 cut(s)	320, 578, 722
Tsp45I	GTSAC	3 cut(s)	65, 116, 901
TspDTI	ATGAA	5 cut(s)	128, 476, 617, 618, 978
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	2 cut(s)	74, 576
VpaK11BI	GGWCC	2 cut(s)	533, 613
XapI	RAATTY	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	590
XspI	CTAG	2 cut(s)	839, 899
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.