RLG00000023094
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
18009629 .. 18013004
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023094

Sequence Viewer

Length: 1200 bp
ATGTGCCTGCTTATCTGGAACGATCTCCCAAGACTCTGCACCAACTCAGTCCTTCACTCTCTTTCTCTCTCACACTCCCTAATCAACCCAGTTCAGATTCAGAAAGGAATCATGAGCTGCTTCGGCTGTTGTGATGAAGATGATATGCATATAGCTACTGACAATGGAGGTCCTTACATGATGAAAAATCCTGCAGGAAATGAGGGGATTCATCATGACTCTGATAATGCGCCCAAAGGTGGTCAAGCCGTAAAGGCCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTAAAGGAAATTACAGATAACTTTGGGACAAGTGCCTTGATTGGGGAAGGTTCTTATGGAAGAGTATATTTTGGAGTACTTAAAAGCGGGGAGCAGGCAGCAATCAAGAAGCTCGATGCCAGCAAACAACCTGATGAGGAATATCTTGCGCAGGTTTCTATGGTATCACGGCTGAAACATGATAATTTTGTTCAACTTCTTGGTTACTGCGTTGATGGGAGTTCTCGTGTTCTTGCCTATGAGTTTGCATCTAATGGATCTCTTCATGATATTCTACACGGACGGAAAGGTGTCAAAGGAGCTCAACCTGGTCCTGTTCTAACTTGGGCACAGCGTGTTAAAATTGCAGTGGGTGCTGCAAGAGGACTCGAGTATTTACATGAAAAAGCGGTCCCCCATATCATTCATCGCGACATCAAGTCCAGCAATGTACTAATATTTGATGATGATGTTGCTAAGATTGCAGACTTTGATTTATCCAATCAAGCTCCTGACATGGCAGCACGTCTTCACTCCACTCGTGTTCTAGGAACCTTTGGTTATCATGCCCCAGAATATGCGATGACTGGACAGTTGAATGCCAAAAGTGATGTTTACAGTTTTGGTGTTGTCCTGCTAGAGCTTTTGACCGGAAGAAAACCTGTTGATCATACATTACCACGGGGACAGCAGAGCCTAGTGACATGGGCTACACCAAAACTTAGTGAAGACAAAGTTAGGCAGTGTGTTGATGCAAGACTAGGAGGAGAATTCCCCGCCAAGGCTGTTGCGAAGATGGCTGCAGTTGCTGCCTTGTGTGTGCAATATGAGGCTGATTTCCGCCCAAACATGAGCATTGTGGTCAAAGCCCTACAACCACTGCTAAATGCTCGGCCTGGACCTACTGGTGAATCACCAAGCTTGTAG

Protein Analysis

400

Amino Acids

43.25

Weight (kDa)

6.27

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 110 - 316 1.6e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 111 - 382 4.5e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 436
AccII CGCG 1 cut(s) 705
AciI CCGC 5 cut(s) 275, 381, 683, 1050, 1114
AclWI GGATC 1 cut(s) 559
AcsI RAATTY 1 cut(s) 1043
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 2 cut(s) 372, 726
AfiI CCNNNNNNNGG 3 cut(s) 239, 336, 1054
AgsI TTSAA 3 cut(s) 269, 488, 871
AhdI GACNNNNNGTC 1 cut(s) 712
AjiI CACGTC 1 cut(s) 800
AjnI CCWGG 2 cut(s) 601, 1168
AluBI AGCT 8 cut(s) 117, 155, 295, 406, 596, 782, 916, 1194
AluI AGCT 8 cut(s) 117, 155, 295, 406, 596, 782, 916, 1194
Alw21I GWGCWC 1 cut(s) 598
AlwI GGATC 1 cut(s) 559
AlwNI CAGNNNCTG 1 cut(s) 1082
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 2 cut(s) 255, 1166
ApeKI GCWGC 6 cut(s) 117, 392, 650, 794, 1073, 1082
ApoI RAATTY 1 cut(s) 1043
AspLEI GCGC 2 cut(s) 232, 445
AspS9I GGNCC 5 cut(s) 170, 256, 605, 685, 1172
AsuHPI GGTGA 2 cut(s) 1179, 1193
AvaI CYCGRG 1 cut(s) 662
AvaII GGWCC 4 cut(s) 170, 605, 685, 1172
BaeGI GKGCMC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 598
BauI CACGAG 2 cut(s) 519, 813
BbsI GAAGAC 2 cut(s) 794, 1008
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 6 cut(s) 104, 404, 637, 806, 1060, 1069
BccI CCATC 2 cut(s) 503, 1063
BceAI ACGGC 2 cut(s) 233, 479
BciT130I CCWGG 2 cut(s) 603, 1170
BclI TGATCA 1 cut(s) 940
BfaI CTAG 4 cut(s) 821, 911, 971, 1034
BfmI CTRYAG 2 cut(s) 192, 1074
BfuAI ACCTGC 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 6 cut(s) 118, 393, 651, 795, 1074, 1083
BlsI GCNGC 6 cut(s) 119, 394, 652, 796, 1075, 1084
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 603, 1170
Bme18I GGWCC 4 cut(s) 170, 605, 685, 1172
BmeRI GACNNNNNGTC 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 662
BmgBI CACGTC 1 cut(s) 800
BmgT120I GGNCC 5 cut(s) 170, 256, 605, 685, 1172
BmiI GGNNCC 2 cut(s) 687, 826
BmrFI CCNGG 2 cut(s) 603, 1170
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 3 cut(s) 400, 551, 1015
BmuI ACTGGG 1 cut(s) 83
BpiI GAAGAC 2 cut(s) 794, 1008
BsaJI CCNNGG 2 cut(s) 953, 1053
BsaWI WCCGGW 1 cut(s) 923
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 336, 1054
Bse1I ACTGG 4 cut(s) 89, 284, 865, 1183
Bse3DI GCAATG 1 cut(s) 727
BseBI CCWGG 2 cut(s) 603, 1170
BseDI CCNNGG 2 cut(s) 953, 1053
BseLI CCNNNNNNNGG 3 cut(s) 239, 336, 1054
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 4 cut(s) 89, 284, 865, 1183
BseRI GAGGAG 2 cut(s) 305, 1053
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 6 cut(s) 104, 404, 637, 806, 1060, 1069
BseYI CCCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 705
BshFI GGCC 2 cut(s) 257, 1168
BsiHKAI GWGCWC 1 cut(s) 598
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 1 cut(s) 924
BslFI GGGAC 3 cut(s) 334, 671, 972
BslI CCNNNNNNNGG 3 cut(s) 239, 336, 1054
BsmFI GGGAC 3 cut(s) 334, 671, 972
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 2 cut(s) 257, 1168
BsoBI CYCGRG 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 598, 625
Bsp143I GATC 3 cut(s) 22, 551, 940
Bsp68I TCGCGA 1 cut(s) 705
BspACI CCGC 5 cut(s) 275, 381, 683, 1050, 1114
BspANI GGCC 2 cut(s) 257, 1168
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 705
BspHI TCATGA 3 cut(s) 111, 214, 559
BspLI GGNNCC 2 cut(s) 687, 826
BspMAI CTGCAG 2 cut(s) 196, 1078
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 559
BsrDI GCAATG 1 cut(s) 727
BsrI ACTGG 4 cut(s) 89, 284, 865, 1183
BssECI CCNNGG 2 cut(s) 953, 1053
BssMI GATC 3 cut(s) 22, 551, 940
BssSI CACGAG 2 cut(s) 519, 813
BssT1I CCWWGG 1 cut(s) 1053
Bst2BI CACGAG 2 cut(s) 519, 813
Bst2UI CCWGG 2 cut(s) 603, 1170
Bst4CI ACNGT 2 cut(s) 867, 893
Bst6I CTCTTC 2 cut(s) 349, 561
BstAPI GCANNNNNTGC 2 cut(s) 647, 1082
BstC8I GCNNGC 3 cut(s) 8, 390, 415
BstDEI CTNAG 3 cut(s) 46, 750, 995
BstDSI CCRYGG 1 cut(s) 953
BstFNI CGCG 1 cut(s) 705
BstHHI GCGC 2 cut(s) 232, 445
BstKTI GATC 3 cut(s) 25, 554, 943
BstMBI GATC 3 cut(s) 22, 551, 940
BstMWI GCNNNNNNNGC 7 cut(s) 123, 254, 647, 755, 1070, 1079, 1082
BstNI CCWGG 2 cut(s) 603, 1170
BstSCI CCNGG 2 cut(s) 601, 1168
BstSFI CTRYAG 2 cut(s) 192, 1074
BstSLI GKGCMC 1 cut(s) 625
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 6 cut(s) 104, 404, 637, 806, 1060, 1069
BstV2I GAAGAC 2 cut(s) 794, 1008
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 2 cut(s) 257, 1168
BtgI CCRYGG 1 cut(s) 953
BtgZI GCGATG 2 cut(s) 686, 869
BtrI CACGTC 1 cut(s) 800
BtsI GCAGTG 3 cut(s) 648, 1022, 1151
BtsIMutI CAGTG 3 cut(s) 648, 1022, 1151
BtuMI TCGCGA 1 cut(s) 705
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 8, 390, 415
CaiI CAGNNNCTG 1 cut(s) 1082
CciI TCATGA 3 cut(s) 111, 214, 559
CfoI GCGC 2 cut(s) 232, 445
Cfr13I GGNCC 5 cut(s) 170, 256, 605, 685, 1172
CsiI ACCWGGT 1 cut(s) 601
Csp6I GTAC 2 cut(s) 371, 725
CviQI GTAC 2 cut(s) 371, 725
DdeI CTNAG 3 cut(s) 46, 750, 995
DpnI GATC 3 cut(s) 24, 553, 942
DpnII GATC 3 cut(s) 22, 551, 940
DraIII CACNNNGTG 1 cut(s) 629
DriI GACNNNNNGTC 1 cut(s) 712
Eam1104I CTCTTC 2 cut(s) 349, 561
Eam1105I GACNNNNNGTC 1 cut(s) 712
EarI CTCTTC 2 cut(s) 349, 561
EciI GGCGGA 1 cut(s) 1103
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 1053
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 4 cut(s) 170, 605, 685, 1172
Eco53kI GAGCTC 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 1043
EcoRII CCWGG 2 cut(s) 601, 1168
EcoT14I CCWWGG 1 cut(s) 1053
EcoT22I ATGCAT 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 1053
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 3 cut(s) 334, 671, 972
FauI CCCGC 2 cut(s) 374, 1057
FbaI TGATCA 1 cut(s) 940
Fnu4HI GCNGC 6 cut(s) 118, 393, 651, 795, 1074, 1083
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 6 cut(s) 118, 393, 651, 795, 1074, 1083
FspBI CTAG 4 cut(s) 821, 911, 971, 1034
FspI TGCGCA 1 cut(s) 444
GlaI GCGC 2 cut(s) 231, 444
GluI GCNGC 6 cut(s) 118, 393, 651, 795, 1074, 1083
GsaI CCCAGC 1 cut(s) 262
HaeIII GGCC 2 cut(s) 257, 1168
HapII CCGG 1 cut(s) 924
HhaI GCGC 2 cut(s) 232, 445
Hin6I GCGC 2 cut(s) 230, 443
HinP1I GCGC 2 cut(s) 230, 443
HindIII AAGCTT 1 cut(s) 1192
HinfI GANTC 7 cut(s) 33, 97, 108, 208, 218, 660, 1184
HpaII CCGG 1 cut(s) 924
HphI GGTGA 2 cut(s) 1179, 1193
Hpy166II GTNNAC 1 cut(s) 889
Hpy188I TCNGA 3 cut(s) 96, 102, 223
Hpy188III TCNNGA 7 cut(s) 16, 112, 215, 400, 560, 704, 785
Hpy8I GTNNAC 1 cut(s) 889
HpyAV CCTTC 2 cut(s) 62, 335
HpyCH4III ACNGT 2 cut(s) 867, 893
HpyCH4IV ACGT 1 cut(s) 799
HpyF10VI GCNNNNNNNGC 7 cut(s) 123, 254, 647, 755, 1070, 1079, 1082
HpyF3I CTNAG 3 cut(s) 46, 750, 995
HpySE526I ACGT 1 cut(s) 799
HspAI GCGC 2 cut(s) 230, 443
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 3 cut(s) 22, 551, 940
LmnI GCTCC 4 cut(s) 292, 385, 593, 787
Lsp1109I GCAGC 6 cut(s) 104, 404, 637, 806, 1060, 1069
LweI GCATC 3 cut(s) 400, 551, 1015
MabI ACCWGGT 1 cut(s) 601
MaeI CTAG 4 cut(s) 821, 911, 971, 1034
MaeII ACGT 1 cut(s) 799
MaeIII GTNAC 2 cut(s) 497, 973
MalI GATC 3 cut(s) 24, 553, 942
MboI GATC 3 cut(s) 22, 551, 940
MboII GAAGA 7 cut(s) 149, 366, 548, 794, 939, 1013, 1078
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 2 cut(s) 598, 625
MluCI AATT 4 cut(s) 303, 478, 636, 1043
MlyI GAGTC 3 cut(s) 27, 212, 654
MnlI CCTC 7 cut(s) 161, 196, 283, 424, 650, 1031, 1096
Mph1103I ATGCAT 1 cut(s) 150
MseI TTAA 2 cut(s) 375, 633
MspI CCGG 1 cut(s) 924
MspR9I CCNGG 2 cut(s) 603, 1170
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 2 cut(s) 603, 1170
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 7 cut(s) 123, 254, 647, 755, 1070, 1079, 1082
NdeII GATC 3 cut(s) 22, 551, 940
NlaIV GGNNCC 2 cut(s) 687, 826
NmeAIII GCCGAG 1 cut(s) 1144
NmuCI GTSAC 1 cut(s) 973
NruI TCGCGA 1 cut(s) 705
NsbI TGCGCA 1 cut(s) 444
NsiI ATGCAT 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 662
PagI TCATGA 3 cut(s) 111, 214, 559
PctI GAATGC 1 cut(s) 877
PfeI GAWTC 4 cut(s) 97, 108, 208, 1184
PkrI GCNGC 6 cut(s) 119, 394, 652, 796, 1075, 1084
PleI GAGTC 3 cut(s) 27, 212, 654
PpsI GAGTC 3 cut(s) 27, 212, 654
PpuMI RGGWCCY 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 601, 1168
PspFI CCCAGC 1 cut(s) 258
PspGI CCWGG 2 cut(s) 601, 1168
PspN4I GGNNCC 2 cut(s) 687, 826
PspPI GGNCC 5 cut(s) 170, 256, 605, 685, 1172
PspPPI RGGWCCY 1 cut(s) 170
PspXI VCTCGAGB 1 cut(s) 662
PstI CTGCAG 2 cut(s) 196, 1078
PstNI CAGNNNCTG 1 cut(s) 1082
PsuI RGATCY 1 cut(s) 551
RruI TCGCGA 1 cut(s) 705
RsaI GTAC 2 cut(s) 372, 726
RsaNI GTAC 2 cut(s) 371, 725
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 2 cut(s) 375, 633
SatI GCNGC 6 cut(s) 118, 393, 651, 795, 1074, 1083
Sau3AI GATC 3 cut(s) 22, 551, 940
Sau96I GGNCC 5 cut(s) 170, 256, 605, 685, 1172
SbfI CCTGCAGG 1 cut(s) 196
ScaI AGTACT 1 cut(s) 372
SchI GAGTC 3 cut(s) 27, 212, 654
ScrFI CCNGG 2 cut(s) 603, 1170
SdaI CCTGCAGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 598, 625
SexAI ACCWGGT 1 cut(s) 601
SfaNI GCATC 3 cut(s) 400, 551, 1015
SfcI CTRYAG 2 cut(s) 192, 1074
Sfr274I CTCGAG 1 cut(s) 662
SinI GGWCC 4 cut(s) 170, 605, 685, 1172
SlaI CTCGAG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse8387I CCTGCAGG 1 cut(s) 196
Sse9I AATT 4 cut(s) 303, 478, 636, 1043
SsiI CCGC 5 cut(s) 275, 381, 683, 1050, 1114
SspI AATATT 1 cut(s) 732
SspMI CTAG 4 cut(s) 821, 911, 971, 1034
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 2 cut(s) 601, 1168
StyI CCWWGG 1 cut(s) 1053
TaaI ACNGT 2 cut(s) 867, 893
TaiI ACGT 1 cut(s) 802
TaqI TCGA 2 cut(s) 408, 663
TasI AATT 4 cut(s) 303, 478, 636, 1043
TatI WGTACW 2 cut(s) 370, 724
TfiI GAWTC 4 cut(s) 97, 108, 208, 1184
Tru1I TTAA 2 cut(s) 375, 633
Tru9I TTAA 2 cut(s) 375, 633
TscAI CASTG 3 cut(s) 648, 1022, 1158
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 6 cut(s) 117, 392, 650, 794, 1073, 1082
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 6 cut(s) 150, 197, 200, 548, 689, 690
TspGWI ACGGA 2 cut(s) 588, 592
TspRI CASTG 3 cut(s) 648, 1022, 1158
VpaK11BI GGWCC 4 cut(s) 170, 605, 685, 1172
XapI RAATTY 1 cut(s) 1043
XhoI CTCGAG 1 cut(s) 662
XspI CTAG 4 cut(s) 821, 911, 971, 1034
ZrmI AGTACT 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.