Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

20549808 .. 20551910

Gene Structure 2103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCATAAAGCGACCGACCATGGAGGTCAATACATGATGAAAAATCCAGCAGGAAATGAGGGAAGCCATCATGCCCCAGGAACTGCACCCAGAGGTGCTCAACCCGTGAGGGTCCAGCCTATCGAAGTTCCTACCATACCATTTGACGAACTAAAGGAGATTACTGAAGGCTTTGGGACCAGTGCTTTGATCGGAGAGGGTTCATATGGAAGAGTATACTATGGGGTTCTTAAAAGTGGGCAGCATGCAGCGATCAAGAAGTTGGATGCCAGTAAACAACCTGATGAGGAATTTCTAGCCCAGGTTTCTATGGTATCAAGGCTGAAACATGACCACTTTGTTCAACTGCTTGGTTACTGCGTTGATGGGGTTTCACGTGTTCTTGCCTACGAGTTTGCATCTAATGGATCTCTTCATGACATTCTACACGGAAGGAAAGGTGTTAAAGGGGCGCAACCTGGTCCAGTTTTGTCGTGGGTGCAACGTGTTAAAATTGCGGTGGGTGCTGCAAAAGGGCTTGAATATTTGCACGAAAAGGCCGATCCCCACATTATTCATCGCGACATCAAGTCTAGCAATGTACTCATATTTGATGATGATGTTGCTAAGATTGCAGACTTTGATTTGTCCAATCAAGCTCCAGATAATGCAGCACGTCTTCACTCCACTCGTGTGCTAGGGACTTTTGGCTATCATGCCCCTGAATATGCAATGACTGGACAGTTGAACGCCAAGAGTGATGTTTACAGTTTTGGTGTTGTCCTGCTTGAGCTTTTGACTGGACGAAAACCAGTTGATCATACGTTACCACGGGGACAGCAGAGTCTAGTAACATGGGCTACACCAAAGCTTAGTGAAGACAAAGTTAGGCAGTGTATTGATTCAAGACTAGGAGGAGAGTACCCACCAAAGGCAGTTGCAAAGATGGCTGCTGTTGCTGCCTTGTGCGTGCAATATGAGGCTGATTTCCGCCCGAACATGAGCATTGTTGTTAAAGCCCTCCAACCCCTGTTAAATGCTCGTCATGGACCTGCCGGTGAATCACCAAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

352

Amino Acids

38.08

Weight (kDa)

7.8

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	62 - 268	2.2e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	63 - 334	2.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	822
Acc36I	ACCTGC	1 cut(s)	1039
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	561
AciI	CCGC	2 cut(s)	497, 970
AclWI	GGATC	2 cut(s)	415, 536
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	186
AcvI	CACGTG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	582, 902
AfiI	CCNNNNNNNGG	1 cut(s)	910
AflIII	ACRYGT	2 cut(s)	376, 484
AgsI	TTSAA	4 cut(s)	344, 521, 727, 885
AhdI	GACNNNNNGTC	1 cut(s)	568
AjiI	CACGTC	1 cut(s)	656
AjnI	CCWGG	3 cut(s)	76, 300, 457
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	3 cut(s)	638, 772, 850
AluI	AGCT	3 cut(s)	638, 772, 850
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	2 cut(s)	415, 536
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	6 cut(s)	241, 248, 506, 650, 929, 938
ApoI	RAATTY	1 cut(s)	290
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	4 cut(s)	112, 177, 461, 1028
AsuHPI	GGTGA	2 cut(s)	1035, 1049
AvaII	GGWCC	4 cut(s)	112, 177, 461, 1028
BauI	CACGAG	1 cut(s)	669
BbrPI	CACGTG	1 cut(s)	377
BbsI	GAAGAC	2 cut(s)	650, 864
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	6 cut(s)	253, 260, 493, 662, 916, 925
BccI	CCATC	3 cut(s)	75, 359, 919
BciT130I	CCWGG	3 cut(s)	78, 302, 459
BclI	TGATCA	1 cut(s)	796
BfaI	CTAG	5 cut(s)	296, 573, 677, 827, 890
BfuAI	ACCTGC	1 cut(s)	1039
BisI	GCNGC	6 cut(s)	242, 249, 507, 651, 930, 939
BlsI	GCNGC	6 cut(s)	243, 250, 508, 652, 931, 940
Bme1390I	CCNGG	3 cut(s)	78, 302, 459
Bme18I	GGWCC	4 cut(s)	112, 177, 461, 1028
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	656
BmgT120I	GGNCC	4 cut(s)	112, 177, 461, 1028
BmiI	GGNNCC	2 cut(s)	113, 178
BmrFI	CCNGG	3 cut(s)	78, 302, 459
BmsI	GCATC	2 cut(s)	256, 407
BpiI	GAAGAC	2 cut(s)	650, 864
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	788
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	4 cut(s)	19, 76, 300, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse118I	RCCGGY	1 cut(s)	1034
Bse1I	ACTGG	6 cut(s)	180, 270, 464, 721, 784, 791
Bse3DI	GCAATG	2 cut(s)	583, 717
BseBI	CCWGG	3 cut(s)	78, 302, 459
BseDI	CCNNGG	4 cut(s)	19, 76, 300, 809
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMI	GCAATG	2 cut(s)	583, 717
BseNI	ACTGG	6 cut(s)	180, 270, 464, 721, 784, 791
BseRI	GAGGAG	1 cut(s)	909
BseXI	GCAGC	6 cut(s)	253, 260, 493, 662, 916, 925
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	1035
BslFI	GGGAC	3 cut(s)	190, 694, 828
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmFI	GGGAC	3 cut(s)	190, 694, 828
BsnI	GGCC	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	5 cut(s)	189, 252, 407, 541, 796
Bsp19I	CCATGG	1 cut(s)	19
Bsp68I	TCGCGA	1 cut(s)	561
BspACI	CCGC	2 cut(s)	497, 970
BspANI	GGCC	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	561
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	113, 178
BspMI	ACCTGC	1 cut(s)	1039
BspPI	GGATC	2 cut(s)	415, 536
BsrDI	GCAATG	2 cut(s)	583, 717
BsrFI	RCCGGY	1 cut(s)	1034
BsrI	ACTGG	6 cut(s)	180, 270, 464, 721, 784, 791
BssAI	RCCGGY	1 cut(s)	1034
BssECI	CCNNGG	4 cut(s)	19, 76, 300, 809
BssMI	GATC	5 cut(s)	189, 252, 407, 541, 796
BssNAI	GTATAC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	669
Bst2UI	CCWGG	3 cut(s)	78, 302, 459
Bst4CI	ACNGT	2 cut(s)	723, 749
Bst6I	CTCTTC	2 cut(s)	205, 417
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	246, 950
BstDEI	CTNAG	2 cut(s)	606, 851
BstDSI	CCRYGG	2 cut(s)	19, 809
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	5 cut(s)	192, 255, 410, 544, 799
BstMBI	GATC	5 cut(s)	189, 252, 407, 541, 796
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	5 cut(s)	503, 611, 926, 935, 938
BstNI	CCWGG	3 cut(s)	78, 302, 459
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	76, 300, 457
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	6 cut(s)	253, 260, 493, 662, 916, 925
BstV2I	GAAGAC	2 cut(s)	650, 864
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BstZ17I	GTATAC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	2 cut(s)	19, 809
BtgZI	GCGATG	1 cut(s)	542
BtrI	CACGTC	1 cut(s)	656
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	878
BtsIMutI	CAGTG	2 cut(s)	187, 878
BtuMI	TCGCGA	1 cut(s)	561
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	2 cut(s)	246, 950
CaiI	CAGNNNCTG	1 cut(s)	83
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	1034
Cfr13I	GGNCC	4 cut(s)	112, 177, 461, 1028
CsiI	ACCWGGT	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	581, 901
CviQI	GTAC	2 cut(s)	581, 901
DdeI	CTNAG	2 cut(s)	606, 851
DpnI	GATC	5 cut(s)	191, 254, 409, 543, 798
DpnII	GATC	5 cut(s)	189, 252, 407, 541, 796
DrdI	GACNNNNNNGTC	1 cut(s)	822
DriI	GACNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	822
Eam1104I	CTCTTC	2 cut(s)	205, 417
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	2 cut(s)	205, 417
EciI	GGCGGA	1 cut(s)	959
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	4 cut(s)	112, 177, 461, 1028
Eco57I	CTGAAG	1 cut(s)	186
Eco72I	CACGTG	1 cut(s)	377
EcoRII	CCWGG	3 cut(s)	76, 300, 457
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	19
FaqI	GGGAC	3 cut(s)	190, 694, 828
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	796
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	6 cut(s)	242, 249, 507, 651, 930, 939
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	6 cut(s)	242, 249, 507, 651, 930, 939
FspBI	CTAG	5 cut(s)	296, 573, 677, 827, 890
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	6 cut(s)	242, 249, 507, 651, 930, 939
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	1 cut(s)	1035
HhaI	GCGC	1 cut(s)	454
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	3 cut(s)	823, 881, 1040
HpaII	CCGG	1 cut(s)	1035
HphI	GGTGA	2 cut(s)	1035, 1049
Hpy166II	GTNNAC	3 cut(s)	217, 275, 745
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	5 cut(s)	256, 416, 560, 641, 885
Hpy8I	GTNNAC	3 cut(s)	217, 275, 745
HpyAV	CCTTC	2 cut(s)	161, 426
HpyCH4III	ACNGT	2 cut(s)	723, 749
HpyCH4IV	ACGT	4 cut(s)	376, 484, 655, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	503, 611, 926, 935, 938
HpyF3I	CTNAG	2 cut(s)	606, 851
HpySE526I	ACGT	4 cut(s)	376, 484, 655, 803
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	5 cut(s)	189, 252, 407, 541, 796
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	6 cut(s)	253, 260, 493, 662, 916, 925
LweI	GCATC	2 cut(s)	256, 407
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	5 cut(s)	296, 573, 677, 827, 890
MaeII	ACGT	4 cut(s)	376, 484, 655, 803
MaeIII	GTNAC	3 cut(s)	353, 804, 829
MalI	GATC	5 cut(s)	191, 254, 409, 543, 798
MboI	GATC	5 cut(s)	189, 252, 407, 541, 796
MboII	GAAGA	4 cut(s)	222, 404, 650, 869
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	290, 492
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	2 cut(s)	243, 1027
MnlI	CCTC	9 cut(s)	17, 52, 86, 102, 190, 280, 887, 952, 1010
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	231, 444, 489, 993, 1013
MslI	CAYNNNNRTG	1 cut(s)	671
MspI	CCGG	1 cut(s)	1035
MspR9I	CCNGG	3 cut(s)	78, 302, 459
MvaI	CCWGG	3 cut(s)	78, 302, 459
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	5 cut(s)	503, 611, 926, 935, 938
NcoI	CCATGG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	5 cut(s)	189, 252, 407, 541, 796
NlaIV	GGNNCC	2 cut(s)	113, 178
NruI	TCGCGA	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	248
OliI	CACNNNNGTG	1 cut(s)	671
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PfeI	GAWTC	2 cut(s)	881, 1040
PkrI	GCNGC	6 cut(s)	243, 250, 508, 652, 931, 940
PleI	GAGTC	1 cut(s)	831
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	831
Ppu21I	YACGTR	1 cut(s)	377
Psp6I	CCWGG	3 cut(s)	76, 300, 457
PspCI	CACGTG	1 cut(s)	377
PspGI	CCWGG	3 cut(s)	76, 300, 457
PspN4I	GGNNCC	2 cut(s)	113, 178
PspPI	GGNCC	4 cut(s)	112, 177, 461, 1028
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	407
RruI	TCGCGA	1 cut(s)	561
RsaI	GTAC	2 cut(s)	582, 902
RsaNI	GTAC	2 cut(s)	581, 901
RseI	CAYNNNNRTG	1 cut(s)	671
SaqAI	TTAA	5 cut(s)	231, 444, 489, 993, 1013
SatI	GCNGC	6 cut(s)	242, 249, 507, 651, 930, 939
Sau3AI	GATC	5 cut(s)	189, 252, 407, 541, 796
Sau96I	GGNCC	4 cut(s)	112, 177, 461, 1028
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	3 cut(s)	78, 302, 459
SduI	GDGCHC	1 cut(s)	100
SexAI	ACCWGGT	1 cut(s)	457
SfaNI	GCATC	2 cut(s)	256, 407
SinI	GGWCC	4 cut(s)	112, 177, 461, 1028
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	290, 492
SsiI	CCGC	2 cut(s)	497, 970
SspI	AATATT	1 cut(s)	524
SspMI	CTAG	5 cut(s)	296, 573, 677, 827, 890
StyD4I	CCNGG	3 cut(s)	76, 300, 457
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	723, 749
TaiI	ACGT	4 cut(s)	379, 487, 658, 806
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	290, 492
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	2 cut(s)	881, 1040
Tru1I	TTAA	5 cut(s)	231, 444, 489, 993, 1013
Tru9I	TTAA	5 cut(s)	231, 444, 489, 993, 1013
TscAI	CASTG	2 cut(s)	187, 878
TseI	GCWGC	6 cut(s)	241, 248, 506, 650, 929, 938
TspDTI	ATGAA	4 cut(s)	53, 192, 404, 545
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	187, 878
VpaK11BI	GGWCC	4 cut(s)	112, 177, 461, 1028
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	5 cut(s)	296, 573, 677, 827, 890
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.