Rroxscaffold_6G00396000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
17217113 .. 17220006
2894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396000.1

Sequence Viewer

Length: 1110 bp
ATGAGCTGCTTCGGCTGTTGTGATGAAGATGATATGCATAAAGCTACTGACAATGGAGGTCCTTACATGATGAAAAATCCTGCAGGAAATGAGGGGATTCATCATGACTCCGGTAGTGCGCCCAAAGGTGGTCAAGCCGTAAAGGCCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTAAAGGAAATTACAGATAACTTTGGGACAAGTGCCTTGATTGGGGAAGGTTCTTATGGAAGAGTATATTTTGGAGTACTTAAAAGCGGGGAGCAGGCAGCAATCAAGAAGCTCGATGCCAGCAAACAACCTGATGAGGAATATCTTGCGCAGGTTTCTATGGTATCACGGCTGAAAAATGATAATTTTGTTCAACTTCTTGGTTACTGCGTTGATGGGAGTTCTCGTGTTCTTGCCTATGAGTTTGCATCTAATGGATCTCTTCATGATATTCTACACGGAAGGAAAGGTGTCAAAGGAGCTCAACCTGGTCCTGTTCTAACTTGGGCACAGCGTGTTAAAATTGCAGTGGGTGCTGCAAGAGGACTCGAGTATCTACATGAAAAAGCGGTCCCCCATATCATTCATCGCGACATCAAGTCCAGCAATGTACTAATATTTGATGATGATGTCGCTAAGATTGCAGACTTTGATTTATCCAACCAAGCTCCTGATATGGCAGCACGTCTTCACTCCACTCGTGTTCTAGGAACCTTTGGTTATCATGCCCCAGAATATGCGATGACTGGACAGTTGAATGCCAAAAGTGATGTTTACAGTTTTGGTGTTGTCCTGCTAGAGCTTTTGACCGGAAGAAAACCTGTTGATCATACATTACCACGGGGACAGCAGAGCCTAGTGACATGGGCTACACCAAAACTTAGTGAAGACAAAGTTAGGCAGTGTGTTGATGCAAGACTAGGAGGAGAATTCCCCCCAAGGCTGTTGCGAAGTTGCCAAACTAGCAGATTCATTATGGCTGCAGTCGCTGCCTTGTGTGTGCAATATGAGGCTGATTTCCGCCCAAACATGAGCATTGTGGTCAAAGCCCTACAACCACTGCTAAATGCTCGGACTGGACCTACTGGTGAATCACCAAGCTTGTAG

Protein Analysis

369

Amino Acids

40.01

Weight (kDa)

6.42

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 73 - 279 2.9e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 74 - 351 6.7e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
Acc36I ACCTGC 1 cut(s) 325
AccII CGCG 1 cut(s) 594
AciI CCGC 4 cut(s) 164, 270, 572, 1024
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 1 cut(s) 932
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 2 cut(s) 261, 615
AfiI CCNNNNNNNGG 2 cut(s) 128, 225
AgsI TTSAA 3 cut(s) 158, 377, 760
AhdI GACNNNNNGTC 1 cut(s) 601
AjiI CACGTC 1 cut(s) 689
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 8 cut(s) 6, 44, 184, 295, 485, 671, 805, 1104
AluI AGCT 8 cut(s) 6, 44, 184, 295, 485, 671, 805, 1104
Alw21I GWGCWC 1 cut(s) 487
AlwI GGATC 1 cut(s) 448
AlwNI CAGNNNCTG 1 cut(s) 992
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 6 cut(s) 6, 281, 539, 683, 983, 992
ApoI RAATTY 1 cut(s) 932
AspLEI GCGC 2 cut(s) 121, 334
AspS9I GGNCC 5 cut(s) 59, 145, 494, 574, 1082
AsuHPI GGTGA 2 cut(s) 1089, 1103
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 4 cut(s) 59, 494, 574, 1082
BaeGI GKGCMC 1 cut(s) 514
BaeI ACNNNNGTAYC 2 cut(s) 539, 572
BanII GRGCYC 1 cut(s) 487
BauI CACGAG 2 cut(s) 408, 702
BbsI GAAGAC 2 cut(s) 683, 897
Bbv12I GWGCWC 1 cut(s) 487
BbvI GCAGC 5 cut(s) 293, 526, 695, 970, 979
BccI CCATC 1 cut(s) 392
BceAI ACGGC 2 cut(s) 122, 368
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 1 cut(s) 829
BfaI CTAG 5 cut(s) 710, 800, 860, 923, 966
BfmI CTRYAG 2 cut(s) 81, 984
BfuAI ACCTGC 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 6 cut(s) 7, 282, 540, 684, 984, 993
BlsI GCNGC 6 cut(s) 8, 283, 541, 685, 985, 994
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 4 cut(s) 59, 494, 574, 1082
BmeRI GACNNNNNGTC 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 551
BmgBI CACGTC 1 cut(s) 689
BmgT120I GGNCC 5 cut(s) 59, 145, 494, 574, 1082
BmiI GGNNCC 2 cut(s) 576, 715
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 3 cut(s) 289, 440, 904
BpiI GAAGAC 2 cut(s) 683, 897
BsaJI CCNNGG 2 cut(s) 842, 941
BsaWI WCCGGW 2 cut(s) 110, 812
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 225
Bse1I ACTGG 4 cut(s) 173, 754, 1084, 1093
Bse3DI GCAATG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 842, 941
BseLI CCNNNNNNNGG 2 cut(s) 128, 225
BseMI GCAATG 1 cut(s) 616
BseNI ACTGG 4 cut(s) 173, 754, 1084, 1093
BseRI GAGGAG 2 cut(s) 194, 942
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 5 cut(s) 293, 526, 695, 970, 979
BseYI CCCAGC 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 487
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 2 cut(s) 111, 813
BslFI GGGAC 3 cut(s) 223, 560, 861
BslI CCNNNNNNNGG 2 cut(s) 128, 225
BsmFI GGGAC 3 cut(s) 223, 560, 861
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 2 cut(s) 487, 514
Bsp143I GATC 2 cut(s) 440, 829
Bsp68I TCGCGA 1 cut(s) 594
BspACI CCGC 4 cut(s) 164, 270, 572, 1024
BspANI GGCC 1 cut(s) 146
BspFNI CGCG 1 cut(s) 594
BspHI TCATGA 2 cut(s) 103, 448
BspLI GGNNCC 2 cut(s) 576, 715
BspMAI CTGCAG 2 cut(s) 85, 988
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 4 cut(s) 173, 754, 1084, 1093
BssECI CCNNGG 2 cut(s) 842, 941
BssMI GATC 2 cut(s) 440, 829
BssSI CACGAG 2 cut(s) 408, 702
BssT1I CCWWGG 1 cut(s) 941
Bst2BI CACGAG 2 cut(s) 408, 702
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 756, 782
Bst6I CTCTTC 2 cut(s) 238, 450
BstAPI GCANNNNNTGC 2 cut(s) 536, 992
BstC8I GCNNGC 2 cut(s) 279, 304
BstDEI CTNAG 2 cut(s) 639, 884
BstDSI CCRYGG 1 cut(s) 842
BstFNI CGCG 1 cut(s) 594
BstHHI GCGC 2 cut(s) 121, 334
BstKTI GATC 2 cut(s) 443, 832
BstMBI GATC 2 cut(s) 440, 829
BstMWI GCNNNNNNNGC 7 cut(s) 12, 143, 536, 644, 966, 989, 992
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstSFI CTRYAG 2 cut(s) 81, 984
BstSLI GKGCMC 1 cut(s) 514
BstUI CGCG 1 cut(s) 594
BstV1I GCAGC 5 cut(s) 293, 526, 695, 970, 979
BstV2I GAAGAC 2 cut(s) 683, 897
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 842
BtgZI GCGATG 2 cut(s) 575, 758
BtrI CACGTC 1 cut(s) 689
BtsI GCAGTG 3 cut(s) 537, 911, 1061
BtsIMutI CAGTG 3 cut(s) 537, 911, 1061
BtuMI TCGCGA 1 cut(s) 594
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 279, 304
CaiI CAGNNNCTG 1 cut(s) 992
CciI TCATGA 2 cut(s) 103, 448
CfoI GCGC 2 cut(s) 121, 334
Cfr13I GGNCC 5 cut(s) 59, 145, 494, 574, 1082
CsiI ACCWGGT 1 cut(s) 490
Csp6I GTAC 2 cut(s) 260, 614
CviAII CATG 7 cut(s) 67, 104, 449, 563, 728, 867, 1033
CviQI GTAC 2 cut(s) 260, 614
DdeI CTNAG 2 cut(s) 639, 884
DpnI GATC 2 cut(s) 442, 831
DpnII GATC 2 cut(s) 440, 829
DraIII CACNNNGTG 1 cut(s) 518
DriI GACNNNNNGTC 1 cut(s) 601
Eam1104I CTCTTC 2 cut(s) 238, 450
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 2 cut(s) 238, 450
EciI GGCGGA 1 cut(s) 1013
Ecl136II GAGCTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 941
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 4 cut(s) 59, 494, 574, 1082
Eco53kI GAGCTC 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 485
EcoO109I RGGNCCY 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 932
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 941
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 7 cut(s) 70, 107, 452, 566, 731, 870, 1036
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 3 cut(s) 223, 560, 861
FatI CATG 7 cut(s) 66, 103, 448, 562, 727, 866, 1032
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 6 cut(s) 7, 282, 540, 684, 984, 993
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 6 cut(s) 7, 282, 540, 684, 984, 993
FspBI CTAG 5 cut(s) 710, 800, 860, 923, 966
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 2 cut(s) 120, 333
GluI GCNGC 6 cut(s) 7, 282, 540, 684, 984, 993
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 146
HapII CCGG 2 cut(s) 111, 813
HhaI GCGC 2 cut(s) 121, 334
Hin1II CATG 7 cut(s) 70, 107, 452, 566, 731, 870, 1036
Hin6I GCGC 2 cut(s) 119, 332
HinP1I GCGC 2 cut(s) 119, 332
HindIII AAGCTT 1 cut(s) 1102
HinfI GANTC 5 cut(s) 97, 107, 549, 972, 1094
HpaII CCGG 2 cut(s) 111, 813
HphI GGTGA 2 cut(s) 1089, 1103
Hpy166II GTNNAC 1 cut(s) 778
Hpy188I TCNGA 1 cut(s) 1077
Hpy188III TCNNGA 5 cut(s) 104, 289, 449, 593, 674
Hpy8I GTNNAC 1 cut(s) 778
HpyAV CCTTC 2 cut(s) 224, 459
HpyCH4III ACNGT 2 cut(s) 756, 782
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 9 cut(s) 37, 83, 431, 530, 542, 647, 917, 986, 1006
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 143, 536, 644, 966, 989, 992
HpyF3I CTNAG 2 cut(s) 639, 884
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 7 cut(s) 70, 107, 452, 566, 731, 870, 1036
HspAI GCGC 2 cut(s) 119, 332
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 2 cut(s) 440, 829
LmnI GCTCC 4 cut(s) 181, 274, 482, 676
Lsp1109I GCAGC 5 cut(s) 293, 526, 695, 970, 979
LweI GCATC 3 cut(s) 289, 440, 904
MabI ACCWGGT 1 cut(s) 490
MaeI CTAG 5 cut(s) 710, 800, 860, 923, 966
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 2 cut(s) 386, 862
MalI GATC 2 cut(s) 442, 831
MboI GATC 2 cut(s) 440, 829
MboII GAAGA 6 cut(s) 38, 255, 437, 683, 828, 902
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 2 cut(s) 487, 514
MluCI AATT 4 cut(s) 192, 367, 525, 932
MlyI GAGTC 2 cut(s) 101, 543
MmeI TCCRAC 1 cut(s) 687
MnlI CCTC 7 cut(s) 50, 85, 172, 313, 539, 920, 1006
Mph1103I ATGCAT 1 cut(s) 39
MseI TTAA 2 cut(s) 264, 522
MspI CCGG 2 cut(s) 111, 813
MspR9I CCNGG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 7 cut(s) 12, 143, 536, 644, 966, 989, 992
NdeII GATC 2 cut(s) 440, 829
NlaIII CATG 7 cut(s) 70, 107, 452, 566, 731, 870, 1036
NlaIV GGNNCC 2 cut(s) 576, 715
NmuCI GTSAC 1 cut(s) 862
NruI TCGCGA 1 cut(s) 594
NsbI TGCGCA 1 cut(s) 333
NsiI ATGCAT 1 cut(s) 39
PaeR7I CTCGAG 1 cut(s) 551
PagI TCATGA 2 cut(s) 103, 448
PctI GAATGC 1 cut(s) 766
PfeI GAWTC 3 cut(s) 97, 972, 1094
PkrI GCNGC 6 cut(s) 8, 283, 541, 685, 985, 994
PleI GAGTC 2 cut(s) 101, 543
PpsI GAGTC 2 cut(s) 101, 543
PpuMI RGGWCCY 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 487
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 576, 715
PspPI GGNCC 5 cut(s) 59, 145, 494, 574, 1082
PspPPI RGGWCCY 1 cut(s) 59
PspXI VCTCGAGB 1 cut(s) 551
PstI CTGCAG 2 cut(s) 85, 988
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 440
RruI TCGCGA 1 cut(s) 594
RsaI GTAC 2 cut(s) 261, 615
RsaNI GTAC 2 cut(s) 260, 614
SacI GAGCTC 1 cut(s) 487
SaqAI TTAA 2 cut(s) 264, 522
SatI GCNGC 6 cut(s) 7, 282, 540, 684, 984, 993
Sau3AI GATC 2 cut(s) 440, 829
Sau96I GGNCC 5 cut(s) 59, 145, 494, 574, 1082
SbfI CCTGCAGG 1 cut(s) 85
ScaI AGTACT 1 cut(s) 261
SchI GAGTC 2 cut(s) 101, 543
ScrFI CCNGG 1 cut(s) 492
SdaI CCTGCAGG 1 cut(s) 85
SduI GDGCHC 2 cut(s) 487, 514
SexAI ACCWGGT 1 cut(s) 490
SfaNI GCATC 3 cut(s) 289, 440, 904
SfcI CTRYAG 2 cut(s) 81, 984
Sfr274I CTCGAG 1 cut(s) 551
SinI GGWCC 4 cut(s) 59, 494, 574, 1082
SlaI CTCGAG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse8387I CCTGCAGG 1 cut(s) 85
Sse9I AATT 4 cut(s) 192, 367, 525, 932
SsiI CCGC 4 cut(s) 164, 270, 572, 1024
SspI AATATT 1 cut(s) 621
SspMI CTAG 5 cut(s) 710, 800, 860, 923, 966
SstI GAGCTC 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 2 cut(s) 756, 782
TaiI ACGT 1 cut(s) 691
TaqI TCGA 2 cut(s) 297, 552
TasI AATT 4 cut(s) 192, 367, 525, 932
TatI WGTACW 2 cut(s) 259, 613
TfiI GAWTC 3 cut(s) 97, 972, 1094
Tru1I TTAA 2 cut(s) 264, 522
Tru9I TTAA 2 cut(s) 264, 522
TscAI CASTG 3 cut(s) 537, 911, 1068
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 6 cut(s) 6, 281, 539, 683, 983, 992
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 7 cut(s) 39, 86, 89, 437, 578, 579, 964
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 3 cut(s) 537, 911, 1068
VpaK11BI GGWCC 4 cut(s) 59, 494, 574, 1082
XapI RAATTY 1 cut(s) 932
XhoI CTCGAG 1 cut(s) 551
XspI CTAG 5 cut(s) 710, 800, 860, 923, 966
ZrmI AGTACT 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.