Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001209.1

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

44493 .. 47447

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001209.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggaggaggaggacaagaagaagcagcagcagaaggaagatctattttggtcgtcattgaaggagcttaagagtgctgctggtctccgtttatggcgaagactttctctgtcgttaaaaaaaaatactttcttttatgagagcgtctctccacccttaacagcgcattctcagacccaaataaggggctcgagagttaagtcagaatcatttggtgggtttgctccgagcagcaatcaaaatcaaagaatcatgagctgcttcagctgttgtgatgaagatgatatgcataaagcaactgacaatggaggtgcttacatgatgaaaaatcctggaaatgagggaagtcatcatgcctccaacaatgcgcccaagggtggtcaagcggtaaaggtccagccttttgaagttccgcttataccagtagaggagctaaaggaaattacaggtaactttgggacaaatgccttgattggggaaggttcgtatggaagagtatattatgggttacttaaaagcagggaacatgcagcaatcaagaagctagatgccagcaaacaacctgatgagttatcttgcataggtatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

196

Amino Acids

21.72

Weight (kDa)

8.28

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	386, 413
AcuI	CTGAAG	1 cut(s)	247
AfiI	CCNNNNNNNGG	4 cut(s)	183, 184, 377, 474
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	61, 407
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	5 cut(s)	67, 258, 267, 433, 544
AluI	AGCT	5 cut(s)	67, 258, 267, 433, 544
Alw26I	GTCTC	2 cut(s)	89, 151
Ama87I	CYCGRG	1 cut(s)	190
ApeKI	GCWGC	6 cut(s)	25, 28, 77, 231, 258, 530
Asp700I	GAANNNNTTC	1 cut(s)	103
AspLEI	GCGC	2 cut(s)	166, 370
AspS9I	GGNCC	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	6 cut(s)	37, 40, 64, 243, 245, 542
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	89, 151
BfaI	CTAG	1 cut(s)	545
BfrI	CTTAAG	1 cut(s)	68
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	6 cut(s)	26, 29, 78, 232, 259, 531
BlsI	GCNGC	6 cut(s)	27, 30, 79, 233, 260, 532
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	106
BplI	GAGNNNNNCTC	4 cut(s)	131, 163, 133, 165
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 184, 377, 474
Bse1I	ACTGG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	372
BseLI	CCNNNNNNNGG	4 cut(s)	183, 184, 377, 474
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	3 cut(s)	20, 23, 443
BseXI	GCAGC	6 cut(s)	37, 40, 64, 243, 245, 542
BsiHKCI	CYCGRG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	4 cut(s)	183, 184, 377, 474
BsmAI	GTCTC	2 cut(s)	89, 151
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	2 cut(s)	386, 413
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	252
BspTI	CTTAAG	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	487
BstAFI	CTTAAG	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	166, 370
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	89, 151
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	6 cut(s)	37, 40, 64, 243, 245, 542
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	553
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	2 cut(s)	166, 370
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	1 cut(s)	133
CviAII	CATG	4 cut(s)	253, 319, 353, 527
CviJI	RGCY	7 cut(s)	67, 189, 258, 267, 400, 433, 544
CviKI_1	RGCY	7 cut(s)	67, 189, 258, 267, 400, 433, 544
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	4 cut(s)	256, 322, 356, 530
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	252, 318, 352, 526
Fnu4HI	GCNGC	6 cut(s)	26, 29, 78, 232, 259, 531
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	6 cut(s)	26, 29, 78, 232, 259, 531
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	2 cut(s)	165, 369
GluI	GCNGC	6 cut(s)	26, 29, 78, 232, 259, 531
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	166, 370
Hin1II	CATG	4 cut(s)	256, 322, 356, 530
Hin6I	GCGC	2 cut(s)	164, 368
HinP1I	GCGC	2 cut(s)	164, 368
HinfI	GANTC	2 cut(s)	206, 249
Hpy188I	TCNGA	3 cut(s)	174, 205, 228
Hpy188III	TCNNGA	3 cut(s)	192, 253, 538
HpyAV	CCTTC	3 cut(s)	28, 55, 473
HpyCH4V	TGCA	3 cut(s)	289, 530, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	256, 322, 356, 530
HspAI	GCGC	2 cut(s)	164, 368
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	64, 229, 430
LpnPI	CCDG	9 cut(s)	66, 318, 345, 410, 432, 435, 505, 565, 576
Lsp1109I	GCAGC	6 cut(s)	37, 40, 64, 243, 245, 542
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	2 cut(s)	449, 507
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	5 cut(s)	31, 50, 111, 290, 504
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	5 cut(s)	4, 302, 334, 367, 421
Mph1103I	ATGCAT	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	5 cut(s)	69, 116, 158, 198, 513
MspA1I	CMGCKG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	256, 322, 356, 530
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	530
PaeR7I	CTCGAG	1 cut(s)	190
PagI	TCATGA	1 cut(s)	252
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	206, 249
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	6 cut(s)	27, 30, 79, 233, 260, 532
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	267
SaqAI	TTAA	5 cut(s)	69, 116, 158, 198, 513
SatI	GCNGC	6 cut(s)	26, 29, 78, 232, 259, 531
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	190
SmlI	CTYRAG	2 cut(s)	68, 190
SmoI	CTYRAG	2 cut(s)	68, 190
Sse9I	AATT	1 cut(s)	441
SsiI	CCGC	2 cut(s)	386, 413
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	372
TaqI	TCGA	1 cut(s)	191
TasI	AATT	1 cut(s)	441
TfiI	GAWTC	2 cut(s)	206, 249
Tru1I	TTAA	5 cut(s)	69, 116, 158, 198, 513
Tru9I	TTAA	5 cut(s)	69, 116, 158, 198, 513
TseI	GCWGC	6 cut(s)	25, 28, 77, 231, 258, 530
TspDTI	ATGAA	2 cut(s)	291, 338
TspGWI	ACGGA	1 cut(s)	77
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	530
XhoI	CTCGAG	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	545
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.