Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

51596083 .. 51623647

Gene Structure 27565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0403900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGATAAACAGCACAGGATATCTTGTGCTGTTGGGTCAGAATAAGAGTGTTGTTTGGTGGACAAGTTTAGCTAAGTATGCTCAGAGTACAATGGTACAGCTATTAGATTCTGGAAATTTAGTAGTAAGAGATGTGACAGATGGAAAGTCATTGTGGCAAAGCTTCGATTATCCTTCTGATACATTGTTATCGGAAATGAAGATGGGATGGGACTTTAGGACAGGTCTTAAAAGGGGATTATCAGCATGGAAAAATTCAGAAGACCCATGTCCAGGGGAATTCACTTGTGGGATTGAAATGGAATCTCATGCATACCCTGAGGTATATTTCCGGAAAGGTGGTCTGAAATATTATCGTTCTGGCCCATGGAATGGCCTAGCATTCAGTGGTGCATCAGCACTAAGGCCTAATCCAATTTATAGTTTCGACTTTGTGTATAATGATGATGAAGTGTACTTCATCTACAAACTTCGAAGCAAGTCTGTAATTTCAATCATGGTCTTAAATGGAACCACGAGCACACGCGATCGCCTTACATGGATTGAAGCAGAGCAAACTTGGAGGGTCTATGCATCAGTACCTAGAGATTTCTGTGATCAATATAATCTCTGCGGAGCAAATGCAAATTGTATCATTAGTGACAGTCCAGTGTGTCAATGTCTACAAGGATTCATGCCTAAGTCACCAGAGAAATGGAATTTGACAGACTGGTCGCTTGGATGTAAGCGCAAGAAACCCCTAACCTGCCAGGAAAGTAATAAAGACGGGTTTGTCAAGTTCACTAATTTGAAATTGCCGGATACTACACATTCTTGGGTGAACAGAAGTATGAACATCAAGGAATGCAGAGCCAAATGCTTGAACAACTGTTCCTGTTTGGCTTATACAAGCTTGGATATCAGAGCAGGAGGTTCTGGCTGCGCCATTTGGTTTGGTGATCTACTAGATATCAGAAAGCTTCCGGATGCTGGTCAGGATCTATACATTCGAATGTCGGCTTCAGAGATAGATGATGATGGTAAAGTCAAGACAGGAATTATAGTTGCTGTTGTGATAGGCGCAGTGTTTTCAGGAATGCTCTTCGTTGGCTACTACGTCTACCGAAGCAGGACCAAATTGAAAGAGACAGAAAAACGAGAAGAAAATCTGAAGAATGAAGGGGTAGAAAAGGAGGACCTGGAGCTCCCAATCTTCAACATAAGCACAATAGCTAGTGCAACATATAACTTTTCACGTGATATGAAGCTTGGAGAAGGTGGCTTTGGACCTGTTTACAAGGGGACACTAGCAGATGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGCAGTTCTGGCCAAGGATTTAACGAGTTCATGAATGAAATTAAACTGATAGCCAAACTTCAGCACCGAAATCTTGTAAAGATTCTTGGTTGTTGCGCGCAAGAAGGGGAGAAATTGCTGATGTATGAATACATGCCCAACAGAAGCCTGGACTTCTTCATTTTTGATCAAACAAGGGAAGAACTACTGTTAGATTGGCCTAAACGTTTCCACATCATTTGTGGAATTGCTCGGGGTCTCCTTTATCTCCACCAAGATTCCAGGCTAAGGATTATACATAGAGATCTAAAAGCAAGTAATATTCTCCTTGATGATGAAATGAATCCTAAAATTTCAGACTTTGGCTTGGCTAGAATATTAACTGGAGGAGATCAGACTGGAGGAAATACTAAGAGAGTGGTCGGGACATATGGCTATATGGCACCTGAATATGCTGCTGATGGGCTATTTTCTGTGAAATCCGATGTCTTTAGCTTTGGTATAATGGTGCTGGAGATTATAAGTGGAAGGAGAAACAAGGGATTTTATGATCCAGACAACAGCCATAATCTTATTGGAAATGCTTGGAGATTGTGGAATGAAGGAAGGCCTTTAGAATTGATTGATTCATGGTTAGAGAGCTCATGTAATCTATCGGAAGTGGAAGTGTTACGTTGCATTCAAGTTGGTCTTTTGTGCGTGCAACATAATCCTGAGGATCGCCCAAGCATGGCATCTGTGGTTATAATGTTGGGAACTGATATTGCATTGGCTCAACCTAAACAACCTGGTTTCTTTATGGAAAAGGAACACAAGGCAAGCCCTGATATAGGTAATGAATCATCAACCTATGAAGTATCCATTTCGCTTTTGGAAGCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

728

Amino Acids

82.02

Weight (kDa)

6.0

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	2 - 84	9.3e-24	D-mannose binding lectin
S_locus_glycop	PF00954	118 - 228	1.3e-27	S-locus glycoprotein domain
PAN_2	PF08276	249 - 317	1.1e-22	PAN-like domain
Pkinase	PF00069	411 - 680	3.4e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	413 - 682	1.5e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1823, 2048
AasI	GACNNNNNNGTC	2 cut(s)	709, 770
Acc36I	ACCTGC	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	1744
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccI	GTMKAC	2 cut(s)	661, 1098
AccII	CGCG	2 cut(s)	525, 1421
AccIII	TCCGGA	2 cut(s)	330, 961
AciI	CCGC	1 cut(s)	612
AclI	AACGTT	1 cut(s)	1528
AclWI	GGATC	3 cut(s)	984, 1847, 2028
AcoI	YGGCCR	1 cut(s)	1333
AcsI	RAATTY	5 cut(s)	115, 253, 278, 697, 1653
AcuI	CTGAAG	3 cut(s)	984, 1169, 1367
AcvI	CACGTG	1 cut(s)	1235
AfaI	GTAC	4 cut(s)	88, 96, 455, 579
AfiI	CCNNNNNNNGG	6 cut(s)	272, 371, 968, 1590, 2032, 2132
AgsI	TTSAA	9 cut(s)	296, 492, 545, 790, 862, 1120, 1195, 1323, 1985
AjnI	CCWGG	6 cut(s)	271, 747, 1176, 1470, 1583, 2089
AjuI	GAANNNNNNNTTGG	2 cut(s)	1245, 1277
AloI	GAACNNNNNNTCC	2 cut(s)	854, 886
Alw21I	GWGCWC	3 cut(s)	521, 1185, 1946
Alw26I	GTCTC	2 cut(s)	1118, 1565
AlwI	GGATC	3 cut(s)	984, 1847, 2028
Ama87I	CYCGRG	1 cut(s)	1554
Aor13HI	TCCGGA	2 cut(s)	330, 961
AoxI	GGCC	6 cut(s)	361, 373, 404, 1333, 1520, 1910
ApeKI	GCWGC	2 cut(s)	918, 1757
ApoI	RAATTY	5 cut(s)	115, 253, 278, 697, 1653
AsiSI	GCGATCGC	1 cut(s)	529
AspLEI	GCGC	5 cut(s)	729, 923, 1061, 1421, 1423
AspS9I	GGNCC	4 cut(s)	362, 1110, 1174, 1265
AsuHPI	GGTGA	3 cut(s)	675, 829, 947
AsuII	TTCGAA	2 cut(s)	472, 988
AvaI	CYCGRG	1 cut(s)	1554
AvaII	GGWCC	3 cut(s)	1110, 1174, 1265
AxyI	CCTNAGG	2 cut(s)	318, 2016
BalI	TGGCCA	1 cut(s)	1335
BanI	GGYRCC	1 cut(s)	1744
BanII	GRGCYC	2 cut(s)	1185, 1946
BauI	CACGAG	1 cut(s)	514
BbrPI	CACGTG	1 cut(s)	1235
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	3 cut(s)	521, 1185, 1946
BbvI	GCAGC	2 cut(s)	905, 1744
BccI	CCATC	6 cut(s)	134, 196, 201, 1010, 1286, 1757
BciT130I	CCWGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
BciVI	GTATCC	2 cut(s)	793, 2170
BclI	TGATCA	2 cut(s)	595, 1489
BcoDI	GTCTC	2 cut(s)	1118, 1565
BfaI	CTAG	6 cut(s)	377, 582, 944, 1212, 1286, 1674
BfuAI	ACCTGC	1 cut(s)	752
BfuI	GTATCC	2 cut(s)	793, 2170
BglII	AGATCT	1 cut(s)	1606
BisI	GCNGC	2 cut(s)	919, 1758
BlsI	GCNGC	2 cut(s)	920, 1759
Bme1390I	CCNGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
Bme18I	GGWCC	3 cut(s)	1110, 1174, 1265
BmeT110I	CYCGRG	1 cut(s)	1554
BmgT120I	GGNCC	4 cut(s)	362, 1110, 1174, 1265
BmiI	GGNNCC	2 cut(s)	511, 1746
BmrFI	CCNGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
BmsI	GCATC	4 cut(s)	401, 581, 955, 2045
BoxI	GACNNNNGTC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	4 cut(s)	1199, 1707, 1722, 1835
Bpu10I	CCTNAGC	1 cut(s)	1589
Bpu14I	TTCGAA	2 cut(s)	472, 988
BsaAI	YACGTR	1 cut(s)	1235
BsaI	GGTCTC	1 cut(s)	1565
BsaJI	CCNNGG	3 cut(s)	272, 365, 1336
BsaWI	WCCGGW	2 cut(s)	330, 961
Bsc4I	CCNNNNNNNGG	6 cut(s)	272, 371, 968, 1590, 2032, 2132
Bse1I	ACTGG	4 cut(s)	647, 713, 1690, 1705
Bse21I	CCTNAGG	2 cut(s)	318, 2016
BseAI	TCCGGA	2 cut(s)	330, 961
BseBI	CCWGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
BseDI	CCNNGG	3 cut(s)	272, 365, 1336
BseGI	GGATG	3 cut(s)	212, 725, 970
BseLI	CCNNNNNNNGG	6 cut(s)	272, 371, 968, 1590, 2032, 2132
BseMII	CTCAG	3 cut(s)	95, 309, 2007
BseNI	ACTGG	4 cut(s)	647, 713, 1690, 1705
BsePI	GCGCGC	1 cut(s)	1419
BseRI	GAGGAG	1 cut(s)	1704
BseXI	GCAGC	2 cut(s)	905, 1744
Bsh1236I	CGCG	2 cut(s)	525, 1421
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	6 cut(s)	363, 375, 406, 1335, 1522, 1912
BshNI	GGYRCC	1 cut(s)	1744
BsiEI	CGRYCG	1 cut(s)	529
BsiHKAI	GWGCWC	3 cut(s)	521, 1185, 1946
BsiHKCI	CYCGRG	1 cut(s)	1554
BsiSI	CCGG	3 cut(s)	331, 797, 962
BslFI	GGGAC	3 cut(s)	224, 1294, 1741
BslI	CCNNNNNNNGG	6 cut(s)	272, 371, 968, 1590, 2032, 2132
BsmAI	GTCTC	2 cut(s)	1118, 1565
BsmFI	GGGAC	3 cut(s)	224, 1294, 1741
BsmI	GAATGC	4 cut(s)	380, 848, 1080, 1980
BsnI	GGCC	6 cut(s)	363, 375, 406, 1335, 1522, 1912
Bso31I	GGTCTC	1 cut(s)	1565
BsoBI	CYCGRG	1 cut(s)	1554
Bsp119I	TTCGAA	2 cut(s)	472, 988
Bsp1286I	GDGCHC	3 cut(s)	521, 1185, 1946
Bsp13I	TCCGGA	2 cut(s)	330, 961
Bsp143I	GATC	9 cut(s)	526, 595, 937, 976, 1489, 1606, 1693, 1852, 2020
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	1 cut(s)	612
BspANI	GGCC	6 cut(s)	363, 375, 406, 1335, 1522, 1912
BspCNI	CTCAG	3 cut(s)	94, 310, 2008
BspEI	TCCGGA	2 cut(s)	330, 961
BspFNI	CGCG	2 cut(s)	525, 1421
BspHI	TCATGA	1 cut(s)	1353
BspLI	GGNNCC	2 cut(s)	511, 1746
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	3 cut(s)	984, 1847, 2028
BspQI	GCTCTTC	1 cut(s)	1085
BspT104I	TTCGAA	2 cut(s)	472, 988
BspT107I	GGYRCC	1 cut(s)	1744
BspTNI	GGTCTC	1 cut(s)	1565
BsrI	ACTGG	4 cut(s)	647, 713, 1690, 1705
BssECI	CCNNGG	3 cut(s)	272, 365, 1336
BssHII	GCGCGC	1 cut(s)	1419
BssMI	GATC	9 cut(s)	526, 595, 937, 976, 1489, 1606, 1693, 1852, 2020
BssSI	CACGAG	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	365, 1336
Bst2BI	CACGAG	1 cut(s)	514
Bst2UI	CCWGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
Bst4CI	ACNGT	3 cut(s)	644, 869, 1512
Bst6I	CTCTTC	2 cut(s)	1085, 1307
BstBAI	YACGTR	1 cut(s)	1235
BstBI	TTCGAA	2 cut(s)	472, 988
BstC8I	GCNNGC	3 cut(s)	1421, 2003, 2122
BstDEI	CTNAG	8 cut(s)	72, 81, 318, 401, 678, 1589, 1713, 2016
BstDSI	CCRYGG	1 cut(s)	365
BstENI	CCTNNNNNAGG	1 cut(s)	2130
BstF5I	GGATG	3 cut(s)	212, 725, 970
BstFNI	CGCG	2 cut(s)	525, 1421
BstHHI	GCGC	5 cut(s)	729, 923, 1061, 1421, 1423
BstKTI	GATC	9 cut(s)	529, 598, 940, 979, 1492, 1609, 1696, 1855, 2023
BstMAI	GTCTC	2 cut(s)	1118, 1565
BstMBI	GATC	9 cut(s)	526, 595, 937, 976, 1489, 1606, 1693, 1852, 2020
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 1332
BstNI	CCWGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
BstNSI	RCATGY	1 cut(s)	1459
BstPAI	GACNNNNGTC	1 cut(s)	267
BstSCI	CCNGG	6 cut(s)	271, 747, 1176, 1470, 1583, 2089
BstUI	CGCG	2 cut(s)	525, 1421
BstV1I	GCAGC	2 cut(s)	905, 1744
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	2 cut(s)	976, 1606
BstXI	CCANNNNNNTGG	1 cut(s)	693
BstYI	RGATCY	2 cut(s)	976, 1606
Bsu36I	CCTNAGG	2 cut(s)	318, 2016
BsuI	GTATCC	2 cut(s)	793, 2170
BsuRI	GGCC	6 cut(s)	363, 375, 406, 1335, 1522, 1912
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	212, 725, 970
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	391, 654, 1068
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	3 cut(s)	1421, 2003, 2122
CciI	TCATGA	1 cut(s)	1353
CfoI	GCGC	5 cut(s)	729, 923, 1061, 1421, 1423
Cfr13I	GGNCC	4 cut(s)	362, 1110, 1174, 1265
CsiI	ACCWGGT	1 cut(s)	2089
Csp6I	GTAC	4 cut(s)	87, 95, 454, 578
CspCI	CAANNNNNGTGG	2 cut(s)	1523, 1558
CviQI	GTAC	4 cut(s)	87, 95, 454, 578
DdeI	CTNAG	8 cut(s)	72, 81, 318, 401, 678, 1589, 1713, 2016
DpnI	GATC	9 cut(s)	528, 597, 939, 978, 1491, 1608, 1695, 1854, 2022
DpnII	GATC	9 cut(s)	526, 595, 937, 976, 1489, 1606, 1693, 1852, 2020
DrdI	GACNNNNNNGTC	2 cut(s)	709, 770
DseDI	GACNNNNNNGTC	2 cut(s)	709, 770
EaeI	YGGCCR	1 cut(s)	1333
Eam1104I	CTCTTC	2 cut(s)	1085, 1307
EarI	CTCTTC	2 cut(s)	1085, 1307
Ecl136II	GAGCTC	2 cut(s)	1183, 1944
Eco130I	CCWWGG	2 cut(s)	365, 1336
Eco147I	AGGCCT	2 cut(s)	406, 1912
Eco24I	GRGCYC	2 cut(s)	1185, 1946
Eco31I	GGTCTC	1 cut(s)	1565
Eco32I	GATATC	3 cut(s)	20, 898, 949
Eco47I	GGWCC	3 cut(s)	1110, 1174, 1265
Eco53kI	GAGCTC	2 cut(s)	1183, 1944
Eco57I	CTGAAG	3 cut(s)	984, 1169, 1367
Eco72I	CACGTG	1 cut(s)	1235
Eco81I	CCTNAGG	2 cut(s)	318, 2016
Eco88I	CYCGRG	1 cut(s)	1554
EcoICRI	GAGCTC	2 cut(s)	1183, 1944
EcoNI	CCTNNNNNAGG	1 cut(s)	2130
EcoO109I	RGGNCCY	1 cut(s)	1174
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	6 cut(s)	271, 747, 1176, 1470, 1583, 2089
EcoRV	GATATC	3 cut(s)	20, 898, 949
EcoT14I	CCWWGG	2 cut(s)	365, 1336
EcoT22I	ATGCAT	2 cut(s)	313, 574
EcoT38I	GRGCYC	2 cut(s)	1185, 1946
ErhI	CCWWGG	2 cut(s)	365, 1336
FalI	AAGNNNNNCTT	2 cut(s)	1977, 2009
FaqI	GGGAC	3 cut(s)	224, 1294, 1741
FauNDI	CATATG	1 cut(s)	1732
FbaI	TGATCA	2 cut(s)	595, 1489
FblI	GTMKAC	2 cut(s)	661, 1098
Fnu4HI	GCNGC	2 cut(s)	919, 1758
FokI	GGATG	3 cut(s)	219, 732, 977
FriOI	GRGCYC	2 cut(s)	1185, 1946
Fsp4HI	GCNGC	2 cut(s)	919, 1758
FspBI	CTAG	6 cut(s)	377, 582, 944, 1212, 1286, 1674
GlaI	GCGC	5 cut(s)	728, 922, 1060, 1420, 1422
GluI	GCNGC	2 cut(s)	919, 1758
GsuI	CTGGAG	4 cut(s)	1199, 1707, 1722, 1835
HaeIII	GGCC	6 cut(s)	363, 375, 406, 1335, 1522, 1912
HapII	CCGG	3 cut(s)	331, 797, 962
HhaI	GCGC	5 cut(s)	729, 923, 1061, 1421, 1423
Hin6I	GCGC	5 cut(s)	727, 921, 1059, 1419, 1421
HinP1I	GCGC	5 cut(s)	727, 921, 1059, 1419, 1421
HindIII	AAGCTT	4 cut(s)	160, 889, 956, 1244
HinfI	GANTC	8 cut(s)	107, 302, 669, 1405, 1580, 1645, 1928, 2141
HpaII	CCGG	3 cut(s)	331, 797, 962
HphI	GGTGA	3 cut(s)	675, 829, 947
Hpy166II	GTNNAC	7 cut(s)	60, 454, 662, 780, 820, 1099, 1273
Hpy8I	GTNNAC	7 cut(s)	60, 454, 662, 780, 820, 1099, 1273
HpyAV	CCTTC	7 cut(s)	183, 1151, 1247, 1421, 1824, 1898, 1902
HpyCH4III	ACNGT	3 cut(s)	644, 869, 1512
HpyCH4IV	ACGT	4 cut(s)	1095, 1234, 1528, 1975
HpyCH4V	TGCA	9 cut(s)	311, 392, 572, 623, 846, 1217, 1980, 2005, 2069
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 1332
HpyF3I	CTNAG	8 cut(s)	72, 81, 318, 401, 678, 1589, 1713, 2016
HpySE526I	ACGT	4 cut(s)	1095, 1234, 1528, 1975
HspAI	GCGC	5 cut(s)	727, 921, 1059, 1419, 1421
Kpn2I	TCCGGA	2 cut(s)	330, 961
Ksp22I	TGATCA	2 cut(s)	595, 1489
Kzo9I	GATC	9 cut(s)	526, 595, 937, 976, 1489, 1606, 1693, 1852, 2020
LguI	GCTCTTC	1 cut(s)	1085
LmnI	GCTCC	3 cut(s)	614, 1180, 1188
Lsp1109I	GCAGC	2 cut(s)	905, 1744
LweI	GCATC	4 cut(s)	401, 581, 955, 2045
MabI	ACCWGGT	1 cut(s)	2089
MaeI	CTAG	6 cut(s)	377, 582, 944, 1212, 1286, 1674
MaeII	ACGT	4 cut(s)	1095, 1234, 1528, 1975
MaeIII	GTNAC	4 cut(s)	133, 638, 681, 1971
MalI	GATC	9 cut(s)	528, 597, 939, 978, 1491, 1608, 1695, 1854, 2022
MboI	GATC	9 cut(s)	526, 595, 937, 976, 1489, 1606, 1693, 1852, 2020
MboII	GAAGA	9 cut(s)	211, 272, 1072, 1151, 1162, 1183, 1324, 1471, 1514
MflI	RGATCY	2 cut(s)	976, 1606
MhlI	GDGCHC	3 cut(s)	521, 1185, 1946
MlsI	TGGCCA	1 cut(s)	1335
MluNI	TGGCCA	1 cut(s)	1335
MnlI	CCTC	8 cut(s)	313, 555, 902, 1165, 1308, 1682, 1697, 2011
Mox20I	TGGCCA	1 cut(s)	1335
Mph1103I	ATGCAT	2 cut(s)	313, 574
MroI	TCCGGA	2 cut(s)	330, 961
MscI	TGGCCA	1 cut(s)	1335
MseI	TTAA	5 cut(s)	228, 503, 1344, 1365, 1682
MslI	CAYNNNNRTG	1 cut(s)	989
Msp20I	TGGCCA	1 cut(s)	1335
MspI	CCGG	3 cut(s)	331, 797, 962
MspR9I	CCNGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
Mva1269I	GAATGC	4 cut(s)	380, 848, 1080, 1980
MvaI	CCWGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
MvnI	CGCG	2 cut(s)	525, 1421
MwoI	GCNNNNNNNGC	2 cut(s)	77, 1332
NcoI	CCATGG	1 cut(s)	365
NdeI	CATATG	1 cut(s)	1732
NdeII	GATC	9 cut(s)	526, 595, 937, 976, 1489, 1606, 1693, 1852, 2020
NlaIV	GGNNCC	2 cut(s)	511, 1746
NmuCI	GTSAC	3 cut(s)	133, 638, 681
NsiI	ATGCAT	2 cut(s)	313, 574
NspI	RCATGY	1 cut(s)	1459
NspV	TTCGAA	2 cut(s)	472, 988
PagI	TCATGA	1 cut(s)	1353
PauI	GCGCGC	1 cut(s)	1419
PceI	AGGCCT	2 cut(s)	406, 1912
PciSI	GCTCTTC	1 cut(s)	1085
PctI	GAATGC	4 cut(s)	380, 848, 1080, 1980
PfeI	GAWTC	8 cut(s)	107, 302, 669, 1405, 1580, 1645, 1928, 2141
PflMI	CCANNNNNTGG	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	920, 1759
Ple19I	CGATCG	1 cut(s)	529
PmaCI	CACGTG	1 cut(s)	1235
PmlI	CACGTG	1 cut(s)	1235
Ppu21I	YACGTR	1 cut(s)	1235
PpuMI	RGGWCCY	1 cut(s)	1174
PshAI	GACNNNNGTC	1 cut(s)	267
PsiI	TTATAA	2 cut(s)	1823, 2048
Psp124BI	GAGCTC	2 cut(s)	1185, 1946
Psp1406I	AACGTT	1 cut(s)	1528
Psp5II	RGGWCCY	1 cut(s)	1174
Psp6I	CCWGG	6 cut(s)	271, 747, 1176, 1470, 1583, 2089
PspCI	CACGTG	1 cut(s)	1235
PspGI	CCWGG	6 cut(s)	271, 747, 1176, 1470, 1583, 2089
PspN4I	GGNNCC	2 cut(s)	511, 1746
PspPI	GGNCC	4 cut(s)	362, 1110, 1174, 1265
PspPPI	RGGWCCY	1 cut(s)	1174
PsuI	RGATCY	2 cut(s)	976, 1606
PteI	GCGCGC	1 cut(s)	1419
PvuI	CGATCG	1 cut(s)	529
RgaI	GCGATCGC	1 cut(s)	529
RsaI	GTAC	4 cut(s)	88, 96, 455, 579
RsaNI	GTAC	4 cut(s)	87, 95, 454, 578
RseI	CAYNNNNRTG	1 cut(s)	989
SacI	GAGCTC	2 cut(s)	1185, 1946
SapI	GCTCTTC	1 cut(s)	1085
SaqAI	TTAA	5 cut(s)	228, 503, 1344, 1365, 1682
SatI	GCNGC	2 cut(s)	919, 1758
Sau3AI	GATC	9 cut(s)	526, 595, 937, 976, 1489, 1606, 1693, 1852, 2020
Sau96I	GGNCC	4 cut(s)	362, 1110, 1174, 1265
ScrFI	CCNGG	6 cut(s)	273, 749, 1178, 1472, 1585, 2091
SduI	GDGCHC	3 cut(s)	521, 1185, 1946
SexAI	ACCWGGT	1 cut(s)	2089
SfaAI	GCGATCGC	1 cut(s)	529
SfaNI	GCATC	4 cut(s)	401, 581, 955, 2045
SfuI	TTCGAA	2 cut(s)	472, 988
SgfI	GCGATCGC	1 cut(s)	529
SinI	GGWCC	3 cut(s)	1110, 1174, 1265
SmiMI	CAYNNNNRTG	1 cut(s)	989
SseBI	AGGCCT	2 cut(s)	406, 1912
SsiI	CCGC	1 cut(s)	612
SspI	AATATT	3 cut(s)	350, 1624, 1680
SspMI	CTAG	6 cut(s)	377, 582, 944, 1212, 1286, 1674
SstI	GAGCTC	2 cut(s)	1185, 1946
StuI	AGGCCT	2 cut(s)	406, 1912
StyD4I	CCNGG	6 cut(s)	271, 747, 1176, 1470, 1583, 2089
StyI	CCWWGG	2 cut(s)	365, 1336
TaaI	ACNGT	3 cut(s)	644, 869, 1512
TaiI	ACGT	4 cut(s)	1098, 1237, 1531, 1978
TaqI	TCGA	4 cut(s)	165, 426, 472, 988
TatI	WGTACW	2 cut(s)	86, 453
TfiI	GAWTC	8 cut(s)	107, 302, 669, 1405, 1580, 1645, 1928, 2141
Tru1I	TTAA	5 cut(s)	228, 503, 1344, 1365, 1682
Tru9I	TTAA	5 cut(s)	228, 503, 1344, 1365, 1682
TscAI	CASTG	3 cut(s)	391, 654, 1068
TseFI	GTSAC	3 cut(s)	133, 638, 681
TseI	GCWGC	2 cut(s)	918, 1757
Tsp45I	GTSAC	3 cut(s)	133, 638, 681
TspRI	CASTG	3 cut(s)	391, 654, 1068
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	3 cut(s)	1110, 1174, 1265
XagI	CCTNNNNNAGG	1 cut(s)	2130
XapI	RAATTY	5 cut(s)	115, 253, 278, 697, 1653
XceI	RCATGY	1 cut(s)	1459
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1468, 1541, 1874, 2170
XmiI	GTMKAC	2 cut(s)	661, 1098
XspI	CTAG	6 cut(s)	377, 582, 944, 1212, 1286, 1674
Zsp2I	ATGCAT	2 cut(s)	313, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.