Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

31300125 .. 31302757

Gene Structure 2633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATTCAGAAAAGAATCATGAGCTGCTTCGGCTGTTGTGATGAAGATGATATGCAGAAATCTGCTGACAATGGAGGTCATTACATGATGAAAAATCCTGCAGGAAATGAGGGGATTCATCATGATTCCGGTAATGCGCCCAAAGGTGGTCAAGCCGTAAAGGCCCAACCTATTGAAGTTCCGCTTATACCAGTAGAGGAGTTAAAGGATATTACAGATAACTTTGGGACAAGTGCCTTGATTGGGGAAGGTTCTTATGGAAGAGTATATTTTGGAGTACTTAAAAGCGGGGAGCAGGCAGCAATCAAGAAGCTCGATGCCAGCAAACAACCTGATGAGGAATATCTTGCGCAGGTTTCTATGGTATCACGGCTGAAAAATGATAATTTTGTTCAACTTCTTGGTTACTGCGTTGATGGGAGTTCTCGTGTTCTTGCCTATGAGTTTGCATCTAATGGATCTCTTCATGATATTCTACATGGAAGGAAAGGTGTCAAAGGAGCTCAACCTGGTCCTGTTCTAACTTGGGCACAGCGTGTTAAAATTGCAGTGGGTGCTGCAAGAGGACTCGAGTATTTACATGAAAAAGCGGTCCCCCATATCATTCATCGCGACATCAAGTCCAGCAATGTACTAATATTTGATGATGATGTTGCTAAGATTGCAGACTTTGATTTATCCAACCAAGCTCCTGATATGGCAGCACGTCTTCACTCCACTCGTGTTCTAGGAACCTTTGGTTATCATGCCCCAGAATATGCGATGACTGGACAGTTGAATGCCAAAAGTGATGTTTACAGTTTTGGTGTTGTCCTGCTAGAGCTTTTGACCGGAAGAAAACCTGTTGATCATACATTACCACGGGGACAGCAGAGCCTAGTGACATGGGTACTATATGTGTTGCTAATTATTTCTTATGCACCTGTTATCGGTCTCTTAGTTGTTAACATAGGAATATGCTCTTGTTCATATGAACCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

327

Amino Acids

35.53

Weight (kDa)

6.12

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	78 - 284	2.7e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 284	9.3e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	351
Acc36I	ACCTGC	1 cut(s)	343
AccII	CGCG	1 cut(s)	612
AciI	CCGC	3 cut(s)	182, 288, 590
AclWI	GGATC	1 cut(s)	466
AdeI	CACNNNGTG	1 cut(s)	536
AfaI	GTAC	3 cut(s)	279, 633, 891
AfiI	CCNNNNNNNGG	3 cut(s)	146, 243, 929
AgsI	TTSAA	3 cut(s)	176, 395, 778
AhdI	GACNNNNNGTC	1 cut(s)	619
AjiI	CACGTC	1 cut(s)	707
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	6 cut(s)	24, 313, 503, 689, 823, 981
AluI	AGCT	6 cut(s)	24, 313, 503, 689, 823, 981
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	938
AlwI	GGATC	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	4 cut(s)	24, 299, 557, 701
AspLEI	GCGC	2 cut(s)	139, 352
AspS9I	GGNCC	3 cut(s)	163, 512, 592
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	512, 592
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	505
BauI	CACGAG	2 cut(s)	426, 720
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	4 cut(s)	11, 311, 544, 713
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	2 cut(s)	140, 386
BciT130I	CCWGG	1 cut(s)	510
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	1 cut(s)	938
BfaI	CTAG	3 cut(s)	728, 818, 878
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	343
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	4 cut(s)	25, 300, 558, 702
BlsI	GCNGC	4 cut(s)	26, 301, 559, 703
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	2 cut(s)	512, 592
BmeRI	GACNNNNNGTC	1 cut(s)	619
BmeT110I	CYCGRG	1 cut(s)	569
BmgBI	CACGTC	1 cut(s)	707
BmgT120I	GGNCC	3 cut(s)	163, 512, 592
BmiI	GGNNCC	2 cut(s)	594, 733
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	307, 458
BpiI	GAAGAC	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	938
BsaJI	CCNNGG	1 cut(s)	860
BsaWI	WCCGGW	2 cut(s)	128, 830
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 243, 929
Bse1I	ACTGG	2 cut(s)	191, 772
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	860
BseLI	CCNNNNNNNGG	3 cut(s)	146, 243, 929
BseMI	GCAATG	1 cut(s)	634
BseNI	ACTGG	2 cut(s)	191, 772
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	4 cut(s)	11, 311, 544, 713
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	129, 831
BslFI	GGGAC	3 cut(s)	241, 578, 879
BslI	CCNNNNNNNGG	3 cut(s)	146, 243, 929
BsmAI	GTCTC	1 cut(s)	938
BsmFI	GGGAC	3 cut(s)	241, 578, 879
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	938
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	505, 532
Bsp143I	GATC	2 cut(s)	458, 847
Bsp68I	TCGCGA	1 cut(s)	612
BspACI	CCGC	3 cut(s)	182, 288, 590
BspANI	GGCC	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	612
BspHI	TCATGA	3 cut(s)	18, 121, 466
BspLI	GGNNCC	2 cut(s)	594, 733
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	938
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	191, 772
BssECI	CCNNGG	1 cut(s)	860
BssMI	GATC	2 cut(s)	458, 847
BssSI	CACGAG	2 cut(s)	426, 720
Bst2BI	CACGAG	2 cut(s)	426, 720
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	774, 800
Bst6I	CTCTTC	2 cut(s)	256, 468
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	297, 322
BstDEI	CTNAG	2 cut(s)	657, 937
BstDSI	CCRYGG	1 cut(s)	860
BstFNI	CGCG	1 cut(s)	612
BstHHI	GCGC	2 cut(s)	139, 352
BstKTI	GATC	2 cut(s)	461, 850
BstMAI	GTCTC	1 cut(s)	938
BstMBI	GATC	2 cut(s)	458, 847
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 161, 554, 662
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	11, 311, 544, 713
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	860
BtgZI	GCGATG	2 cut(s)	593, 776
BtrI	CACGTC	1 cut(s)	707
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	555
BtuMI	TCGCGA	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	297, 322
CciI	TCATGA	3 cut(s)	18, 121, 466
CfoI	GCGC	2 cut(s)	139, 352
Cfr13I	GGNCC	3 cut(s)	163, 512, 592
CsiI	ACCWGGT	1 cut(s)	508
Csp6I	GTAC	3 cut(s)	278, 632, 890
CviAII	CATG	8 cut(s)	19, 85, 122, 467, 479, 581, 746, 885
CviQI	GTAC	3 cut(s)	278, 632, 890
DdeI	CTNAG	2 cut(s)	657, 937
DpnI	GATC	2 cut(s)	460, 849
DpnII	GATC	2 cut(s)	458, 847
DraIII	CACNNNGTG	1 cut(s)	536
DriI	GACNNNNNGTC	1 cut(s)	619
Eam1104I	CTCTTC	2 cut(s)	256, 468
Eam1105I	GACNNNNNGTC	1 cut(s)	619
EarI	CTCTTC	2 cut(s)	256, 468
Ecl136II	GAGCTC	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	938
Eco47I	GGWCC	2 cut(s)	512, 592
Eco53kI	GAGCTC	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	505
FaeI	CATG	8 cut(s)	22, 88, 125, 470, 482, 584, 749, 888
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	3 cut(s)	241, 578, 879
FatI	CATG	8 cut(s)	18, 84, 121, 466, 478, 580, 745, 884
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	970
FbaI	TGATCA	1 cut(s)	847
Fnu4HI	GCNGC	4 cut(s)	25, 300, 558, 702
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	4 cut(s)	25, 300, 558, 702
FspBI	CTAG	3 cut(s)	728, 818, 878
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	2 cut(s)	138, 351
GluI	GCNGC	4 cut(s)	25, 300, 558, 702
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	2 cut(s)	129, 831
HhaI	GCGC	2 cut(s)	139, 352
Hin1II	CATG	8 cut(s)	22, 88, 125, 470, 482, 584, 749, 888
Hin6I	GCGC	2 cut(s)	137, 350
HinP1I	GCGC	2 cut(s)	137, 350
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HinfI	GANTC	5 cut(s)	4, 15, 115, 125, 567
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	2 cut(s)	129, 831
Hpy166II	GTNNAC	2 cut(s)	796, 946
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	6 cut(s)	19, 122, 307, 467, 611, 692
Hpy8I	GTNNAC	2 cut(s)	796, 946
HpyAV	CCTTC	2 cut(s)	242, 477
HpyCH4III	ACNGT	2 cut(s)	774, 800
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	7 cut(s)	55, 101, 449, 548, 560, 665, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 161, 554, 662
HpyF3I	CTNAG	2 cut(s)	657, 937
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	8 cut(s)	22, 88, 125, 470, 482, 584, 749, 888
HspAI	GCGC	2 cut(s)	137, 350
Ksp22I	TGATCA	1 cut(s)	847
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	2 cut(s)	458, 847
LmnI	GCTCC	3 cut(s)	292, 500, 694
Lsp1109I	GCAGC	4 cut(s)	11, 311, 544, 713
LweI	GCATC	2 cut(s)	307, 458
MabI	ACCWGGT	1 cut(s)	508
MaeI	CTAG	3 cut(s)	728, 818, 878
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	2 cut(s)	404, 880
MalI	GATC	2 cut(s)	460, 849
MboI	GATC	2 cut(s)	458, 847
MboII	GAAGA	5 cut(s)	56, 273, 455, 701, 846
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	505, 532
MluCI	AATT	3 cut(s)	385, 543, 906
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	1 cut(s)	705
MnlI	CCTC	5 cut(s)	68, 103, 190, 331, 557
MseI	TTAA	4 cut(s)	203, 282, 540, 945
MspI	CCGG	2 cut(s)	129, 831
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	4 cut(s)	30, 161, 554, 662
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	2 cut(s)	458, 847
NlaIII	CATG	8 cut(s)	22, 88, 125, 470, 482, 584, 749, 888
NlaIV	GGNNCC	2 cut(s)	594, 733
NmuCI	GTSAC	1 cut(s)	880
NruI	TCGCGA	1 cut(s)	612
NsbI	TGCGCA	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	569
PagI	TCATGA	3 cut(s)	18, 121, 466
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	4 cut(s)	4, 15, 115, 125
PkrI	GCNGC	4 cut(s)	26, 301, 559, 703
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	594, 733
PspPI	GGNCC	3 cut(s)	163, 512, 592
PspXI	VCTCGAGB	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	458
RruI	TCGCGA	1 cut(s)	612
RsaI	GTAC	3 cut(s)	279, 633, 891
RsaNI	GTAC	3 cut(s)	278, 632, 890
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	203, 282, 540, 945
SatI	GCNGC	4 cut(s)	25, 300, 558, 702
Sau3AI	GATC	2 cut(s)	458, 847
Sau96I	GGNCC	3 cut(s)	163, 512, 592
SbfI	CCTGCAGG	1 cut(s)	103
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	1 cut(s)	510
SdaI	CCTGCAGG	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	505, 532
SexAI	ACCWGGT	1 cut(s)	508
SfaNI	GCATC	2 cut(s)	307, 458
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	569
SinI	GGWCC	2 cut(s)	512, 592
SlaI	CTCGAG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse8387I	CCTGCAGG	1 cut(s)	103
Sse9I	AATT	3 cut(s)	385, 543, 906
SsiI	CCGC	3 cut(s)	182, 288, 590
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	3 cut(s)	728, 818, 878
SstI	GAGCTC	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	774, 800
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	315, 570
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	3 cut(s)	385, 543, 906
TatI	WGTACW	2 cut(s)	277, 631
TfiI	GAWTC	4 cut(s)	4, 15, 115, 125
Tru1I	TTAA	4 cut(s)	203, 282, 540, 945
Tru9I	TTAA	4 cut(s)	203, 282, 540, 945
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	4 cut(s)	24, 299, 557, 701
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	7 cut(s)	57, 104, 107, 455, 596, 597, 957
TspRI	CASTG	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	512, 592
XhoI	CTCGAG	1 cut(s)	569
XspI	CTAG	3 cut(s)	728, 818, 878
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.