Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

17182044 .. 17196650

Gene Structure 14607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG082400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAATTGGTGGATTGATGACATTGAAGAAAGGCCCAATAATGATTTAGAGGAAGAGGAAGAGGATTTGATTGATGAGTTTATTCCAGAAGTTGTGGAAGTTATGGAGGTGGATGATGATGATGGGCCAGAAGCTGGTAATGGAAGTGGGCATGTTTTGGGTAATGATGGTGATGGGCCATTACCTGCACAAAATGATGATGGGCGAGTACATGGGGCTCGGGAGCTAAGTCAGAATCATTTGGTGGCTTTGCTCCGAGCAGCAATCAAAATCAAAGGGGAAGTGAGCTGCTTCAGCTGTTGTGATGGAGATGATATGCATAAAGCAACTGACAATGGAGGTGCTTACATGATGAAAAATCCTGCAAGAAATGAGGCAAGTCATCATGCCTCCAGTAATGCGCCCAAGGGTGGTCAAGCGGTAGAGGTCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTAAAGGAAATTACAGATAACTTTGGGACAAATGCCTTGATTGGGGAAGGTTGGTATGGAAGAGCATATTATGGGGTATTTAAAAGCAGGGAGCATGCAACAATCAAGAAGCTAGATGCCAGTAAACAACCTGATGAGGTATCTTGCACAGATGGGACCTATCTTTGCAAAAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

214

Amino Acids

23.42

Weight (kDa)

4.42

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	134
AciI	CCGC	2 cut(s)	419, 446
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	3 cut(s)	134, 410, 507
AgsI	TTSAA	2 cut(s)	26, 440
AluBI	AGCT	6 cut(s)	134, 226, 288, 297, 466, 577
AluI	AGCT	6 cut(s)	134, 226, 288, 297, 466, 577
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	3 cut(s)	32, 125, 176
ApeKI	GCWGC	2 cut(s)	260, 288
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	5 cut(s)	33, 125, 176, 427, 621
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	2 cut(s)	427, 621
BanII	GRGCYC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	272, 275
BccI	CCATC	6 cut(s)	116, 161, 167, 194, 299, 611
BfaI	CTAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	261, 289
BlsI	GCNGC	2 cut(s)	262, 290
Bme18I	GGWCC	2 cut(s)	427, 621
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	5 cut(s)	33, 125, 176, 427, 621
BmiI	GGNNCC	1 cut(s)	622
BmsI	GCATC	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 410, 507
Bse1I	ACTGG	3 cut(s)	393, 455, 585
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	3 cut(s)	134, 410, 507
BseNI	ACTGG	3 cut(s)	393, 455, 585
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	272, 275
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	34, 127, 178
BsiHKCI	CYCGRG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	505, 634
BslI	CCNNNNNNNGG	3 cut(s)	134, 410, 507
BsmFI	GGGAC	2 cut(s)	505, 634
BsnI	GGCC	3 cut(s)	34, 127, 178
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	419, 446
BspANI	GGCC	3 cut(s)	34, 127, 178
BspLI	GGNNCC	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	520
BsrI	ACTGG	3 cut(s)	393, 455, 585
BssECI	CCNNGG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	3 cut(s)	48, 54, 520
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	155, 563
BstV1I	GCAGC	2 cut(s)	272, 275
BsuRI	GGCC	3 cut(s)	34, 127, 178
BtsCI	GGATG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	561
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	5 cut(s)	33, 125, 176, 427, 621
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	5 cut(s)	152, 212, 349, 386, 560
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	227
DraI	TTTAAA	1 cut(s)	547
Eam1104I	CTCTTC	3 cut(s)	48, 54, 520
EarI	CTCTTC	3 cut(s)	48, 54, 520
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	427, 621
Eco57I	CTGAAG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	5 cut(s)	155, 215, 352, 389, 563
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	2 cut(s)	505, 634
FatI	CATG	5 cut(s)	151, 211, 348, 385, 559
Fnu4HI	GCNGC	2 cut(s)	261, 289
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	261, 289
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	2 cut(s)	261, 289
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	34, 127, 178
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	5 cut(s)	155, 215, 352, 389, 563
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	2 cut(s)	234, 257
Hpy188III	TCNNGA	3 cut(s)	86, 221, 571
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4V	TGCA	6 cut(s)	188, 319, 365, 563, 612, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	5 cut(s)	155, 215, 352, 389, 563
HspAI	GCGC	1 cut(s)	401
LguI	GCTCTTC	1 cut(s)	520
LmnI	GCTCC	4 cut(s)	223, 258, 463, 556
Lsp1109I	GCAGC	2 cut(s)	272, 275
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	1 cut(s)	578
MboII	GAAGA	4 cut(s)	38, 65, 71, 537
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	4, 474
Mph1103I	ATGCAT	1 cut(s)	321
MseI	TTAA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	294
NlaIII	CATG	5 cut(s)	155, 215, 352, 389, 563
NlaIV	GGNNCC	1 cut(s)	622
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	2 cut(s)	155, 563
PaeI	GCATGC	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	520
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	262, 290
PpuMI	RGGWCCY	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	622
PspPI	GGNCC	5 cut(s)	33, 125, 176, 427, 621
PspPPI	RGGWCCY	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	297
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	261, 289
Sau96I	GGNCC	5 cut(s)	33, 125, 176, 427, 621
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	571
SinI	GGWCC	2 cut(s)	427, 621
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	2 cut(s)	4, 474
SsiI	CCGC	2 cut(s)	419, 446
SspMI	CTAG	1 cut(s)	578
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	642
TasI	AATT	2 cut(s)	4, 474
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TseI	GCWGC	2 cut(s)	260, 288
TspDTI	ATGAA	2 cut(s)	17, 368
Van91I	CCANNNNNTGG	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	427, 621
XceI	RCATGY	2 cut(s)	155, 563
XspI	CTAG	1 cut(s)	578
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.