Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

23029018 .. 23031155

Gene Structure 2138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAGCTGTTTTGGCTGTTGCCGTGAAGATGATTTGCCTGGAGCTAATGATTATGGAGGTCACAATATGACCAAACAATCTGGAGGAAATGATGGAAGGCGCAACGGCTCTGAAACTGCACAAAAAGGTGCTCAGAGTGTGAAAGTGCAGCCTATAGAAGTAGCTGCTATTCTCGCTGATGAACTGATTGAAGCAACGAATGATTTTGGAACTAATTCTCTTATCGGTGAAGGCTCGTATGCGAGAGTGTATCACGGGGTGTTAAAGAATGGTCAGCGTGCAGCCATTAAAAAGTTAGATTCTAACAAACAGCCTAATGAAGAGTTTCTAGCACAGGTTTCCATGGTTTCGAGGTTGAAGCATGTTAACTTTGTTGAGCTGCTTGGTTACTCTGTTGATGGGAATTCGAGGATACTTGTCTTTGAGTTTGCCCAAAATGGATCTCTTCATGATATTCTTCACGGGAGAAAAGGTGTGAAGGGAGCAAAGCCTGGTCCACTCTTGTCGTGGCATCAACGAGTGAAGATTGCTGTTGGAGCAGCAAGAGGGCTTGAGTATTTACATGAAAAGGCAAATCCACATGTCATCCACCGTGACATAAAATCCAGCAATGTTCTAATCTTTGATAACGATGTAGCCAAGATAGCTGACTTTGATCTCTCAAATCAAGCTCCTGATATGGCAGCACGCCTTCATTCAACTCGTGTTCTTGGAACCTTTGGTTACCATGCCCCTGAATATGCAATGACTGGGCAATTGAGTGCCAAGAGTGACGTATACAGTTTCGGAGTTGTACTGCTCGAGCTTCTTACAGGTCGAAAGCCTGTTGATCATACATTGCCTCGAGGCCAGCAAAGTCTAGTCACATGGGCTACACCAAAGCTAAGCGAAGACAAGGTTAAGCAGTGTGTTGATTCAAGACTGGGAGGAGATTACCCTCCAAAAGCTGTTGCTAAGTTAGCTGCTGTTGCTGCATTGTGTGTACAATACGAAGCTGATTTCAGACCAAACATGAGTATTGTCGTGAAGGCTCTGCAACCATTGTTGAATGCTCGGACCGGACCTGCAGGAGAAGGAGCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

361

Amino Acids

38.99

Weight (kDa)

8.47

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 279	1e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	73 - 345	7.3e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	1072
AccI	GTMKAC	1 cut(s)	777
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	403
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	2 cut(s)	795, 984
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	5 cut(s)	191, 358, 699, 918, 1048
AjnI	CCWGG	2 cut(s)	37, 490
Alw21I	GWGCWC	2 cut(s)	133, 1081
AlwI	GGATC	1 cut(s)	448
Ama87I	CYCGRG	2 cut(s)	800, 843
AoxI	GGCC	1 cut(s)	847
ApeKI	GCWGC	8 cut(s)	148, 164, 281, 379, 539, 683, 962, 971
ApoI	RAATTY	1 cut(s)	403
Asp700I	GAANNNNTTC	2 cut(s)	214, 324
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	3 cut(s)	494, 1056, 1061
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	2 cut(s)	800, 843
AvaII	GGWCC	3 cut(s)	494, 1056, 1061
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	2 cut(s)	133, 1081
BbvI	GCAGC	8 cut(s)	151, 160, 293, 366, 551, 695, 949, 958
BccI	CCATC	2 cut(s)	86, 392
BceAI	ACGGC	2 cut(s)	6, 121
BciT130I	CCWGG	2 cut(s)	39, 492
BciVI	GTATCC	1 cut(s)	405
BclI	TGATCA	1 cut(s)	829
BfaI	CTAG	2 cut(s)	329, 860
BfmI	CTRYAG	2 cut(s)	153, 1065
BfuAI	ACCTGC	1 cut(s)	1072
BfuI	GTATCC	1 cut(s)	405
BisI	GCNGC	8 cut(s)	149, 165, 282, 380, 540, 684, 963, 972
BlpI	GCTNAGC	1 cut(s)	884
BlsI	GCNGC	8 cut(s)	150, 166, 283, 381, 541, 685, 964, 973
Bme1390I	CCNGG	2 cut(s)	39, 492
Bme18I	GGWCC	3 cut(s)	494, 1056, 1061
BmeT110I	CYCGRG	2 cut(s)	800, 843
BmgT120I	GGNCC	3 cut(s)	494, 1056, 1061
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	2 cut(s)	39, 492
BmrI	ACTGGG	2 cut(s)	759, 932
BmsI	GCATC	1 cut(s)	520
BmuI	ACTGGG	2 cut(s)	759, 932
BpiI	GAAGAC	1 cut(s)	897
BpmI	CTGGAG	2 cut(s)	60, 102
Bpu1102I	GCTNAGC	1 cut(s)	884
BpuEI	CTTGAG	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	1058
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bse1I	ACTGG	2 cut(s)	754, 927
Bse3DI	GCAATG	3 cut(s)	616, 750, 836
BseBI	CCWGG	2 cut(s)	39, 492
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	585
BseMI	GCAATG	3 cut(s)	616, 750, 836
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	754, 927
BseRI	GAGGAG	1 cut(s)	942
BseXI	GCAGC	8 cut(s)	151, 160, 293, 366, 551, 695, 949, 958
BsgI	GTGCAG	3 cut(s)	102, 167, 300
BshFI	GGCC	1 cut(s)	849
BsiHKAI	GWGCWC	2 cut(s)	133, 1081
BsiHKCI	CYCGRG	2 cut(s)	800, 843
BsiSI	CCGG	1 cut(s)	1059
BsmI	GAATGC	1 cut(s)	1054
BsnI	GGCC	1 cut(s)	849
BsoBI	CYCGRG	2 cut(s)	800, 843
Bsp1286I	GDGCHC	2 cut(s)	133, 1081
Bsp1407I	TGTACA	1 cut(s)	982
Bsp143I	GATC	3 cut(s)	440, 655, 829
Bsp1720I	GCTNAGC	1 cut(s)	884
Bsp19I	CCATGG	1 cut(s)	342
BspANI	GGCC	1 cut(s)	849
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	715
BspMAI	CTGCAG	1 cut(s)	1069
BspMI	ACCTGC	1 cut(s)	1072
BspPI	GGATC	1 cut(s)	448
BsrDI	GCAATG	3 cut(s)	616, 750, 836
BsrGI	TGTACA	1 cut(s)	982
BsrI	ACTGG	2 cut(s)	754, 927
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	3 cut(s)	440, 655, 829
BssNAI	GTATAC	1 cut(s)	778
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	342
Bst1107I	GTATAC	1 cut(s)	778
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	39, 492
Bst4CI	ACNGT	2 cut(s)	593, 782
Bst6I	CTCTTC	2 cut(s)	315, 450
BstAUI	TGTACA	1 cut(s)	982
BstC8I	GCNNGC	3 cut(s)	279, 688, 851
BstDEI	CTNAG	4 cut(s)	132, 884, 954, 1083
BstDSI	CCRYGG	1 cut(s)	342
BstEII	GGTNACC	1 cut(s)	722
BstF5I	GGATG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	3 cut(s)	443, 658, 832
BstMBI	GATC	3 cut(s)	440, 655, 829
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 173, 536, 644, 959, 968, 971
BstNI	CCWGG	2 cut(s)	39, 492
BstNSI	RCATGY	2 cut(s)	365, 584
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	37, 490
BstSFI	CTRYAG	2 cut(s)	153, 1065
BstV1I	GCAGC	8 cut(s)	151, 160, 293, 366, 551, 695, 949, 958
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BstZ17I	GTATAC	1 cut(s)	778
BsuI	GTATCC	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	849
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	1 cut(s)	911
BveI	ACCTGC	1 cut(s)	1072
Cac8I	GCNNGC	3 cut(s)	279, 688, 851
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	3 cut(s)	494, 1056, 1061
CpoI	CGGWCCG	1 cut(s)	1056
Csp6I	GTAC	2 cut(s)	794, 983
CspI	CGGWCCG	1 cut(s)	1056
CviAII	CATG	8 cut(s)	343, 362, 449, 563, 581, 728, 867, 1012
CviQI	GTAC	2 cut(s)	794, 983
DdeI	CTNAG	4 cut(s)	132, 884, 954, 1083
DpnI	GATC	3 cut(s)	442, 657, 831
DpnII	GATC	3 cut(s)	440, 655, 829
DraIII	CACNNNGTG	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	315, 450
EarI	CTCTTC	2 cut(s)	315, 450
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	3 cut(s)	494, 1056, 1061
Eco88I	CYCGRG	2 cut(s)	800, 843
Eco91I	GGTNACC	1 cut(s)	722
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	37, 490
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	8 cut(s)	346, 365, 452, 566, 584, 731, 870, 1015
FatI	CATG	8 cut(s)	342, 361, 448, 562, 580, 727, 866, 1011
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	8 cut(s)	149, 165, 282, 380, 540, 684, 963, 972
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	8 cut(s)	149, 165, 282, 380, 540, 684, 963, 972
FspBI	CTAG	2 cut(s)	329, 860
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	8 cut(s)	149, 165, 282, 380, 540, 684, 963, 972
GsuI	CTGGAG	2 cut(s)	60, 102
HaeIII	GGCC	1 cut(s)	849
HapII	CCGG	1 cut(s)	1059
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	8 cut(s)	346, 365, 452, 566, 584, 731, 870, 1015
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	299, 914
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	4 cut(s)	367, 497, 778, 983
Hpy188I	TCNGA	5 cut(s)	112, 135, 788, 1004, 1056
Hpy188III	TCNNGA	5 cut(s)	81, 449, 674, 918, 1024
Hpy8I	GTNNAC	4 cut(s)	367, 497, 778, 983
HpyAV	CCTTC	6 cut(s)	90, 224, 472, 701, 1021, 1067
HpyCH4III	ACNGT	2 cut(s)	593, 782
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	7 cut(s)	119, 148, 281, 743, 974, 1036, 1067
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 173, 536, 644, 959, 968, 971
HpyF3I	CTNAG	4 cut(s)	132, 884, 954, 1083
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	8 cut(s)	346, 365, 452, 566, 584, 731, 870, 1015
HspAI	GCGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	440, 655, 829
LmnI	GCTCC	5 cut(s)	41, 482, 536, 676, 1076
Lsp1109I	GCAGC	8 cut(s)	151, 160, 293, 366, 551, 695, 949, 958
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	2 cut(s)	329, 860
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	6 cut(s)	59, 386, 593, 722, 770, 862
MalI	GATC	3 cut(s)	442, 657, 831
MboI	GATC	3 cut(s)	440, 655, 829
MboII	GAAGA	6 cut(s)	38, 332, 437, 449, 535, 902
MfeI	CAATTG	1 cut(s)	755
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	2 cut(s)	133, 1081
MluCI	AATT	3 cut(s)	214, 403, 755
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	9 cut(s)	50, 77, 345, 402, 539, 839, 852, 920, 948
MroXI	GAANNNNTTC	2 cut(s)	214, 324
MseI	TTAA	4 cut(s)	263, 288, 366, 900
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	2 cut(s)	39, 492
MunI	CAATTG	1 cut(s)	755
Mva1269I	GAATGC	1 cut(s)	1054
MvaI	CCWGG	2 cut(s)	39, 492
MwoI	GCNNNNNNNGC	7 cut(s)	12, 173, 536, 644, 959, 968, 971
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	3 cut(s)	440, 655, 829
NlaIII	CATG	8 cut(s)	346, 365, 452, 566, 584, 731, 870, 1015
NlaIV	GGNNCC	1 cut(s)	715
NmuCI	GTSAC	4 cut(s)	59, 593, 770, 862
NspI	RCATGY	2 cut(s)	365, 584
PaeR7I	CTCGAG	2 cut(s)	800, 843
PagI	TCATGA	1 cut(s)	448
PciI	ACATGT	1 cut(s)	580
PctI	GAATGC	1 cut(s)	1054
PdmI	GAANNNNTTC	2 cut(s)	214, 324
PfeI	GAWTC	2 cut(s)	299, 914
PkrI	GCNGC	8 cut(s)	150, 166, 283, 381, 541, 685, 964, 973
PscI	ACATGT	1 cut(s)	580
Psp6I	CCWGG	2 cut(s)	37, 490
PspEI	GGTNACC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	37, 490
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	3 cut(s)	494, 1056, 1061
PspXI	VCTCGAGB	2 cut(s)	800, 843
PstI	CTGCAG	1 cut(s)	1069
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	2 cut(s)	795, 984
RsaNI	GTAC	2 cut(s)	794, 983
Rsr2I	CGGWCCG	1 cut(s)	1056
RsrII	CGGWCCG	1 cut(s)	1056
SaqAI	TTAA	4 cut(s)	263, 288, 366, 900
SatI	GCNGC	8 cut(s)	149, 165, 282, 380, 540, 684, 963, 972
Sau3AI	GATC	3 cut(s)	440, 655, 829
Sau96I	GGNCC	3 cut(s)	494, 1056, 1061
SbfI	CCTGCAGG	1 cut(s)	1069
ScrFI	CCNGG	2 cut(s)	39, 492
SdaI	CCTGCAGG	1 cut(s)	1069
SduI	GDGCHC	2 cut(s)	133, 1081
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	2 cut(s)	153, 1065
Sfr274I	CTCGAG	2 cut(s)	800, 843
SinI	GGWCC	3 cut(s)	494, 1056, 1061
SlaI	CTCGAG	2 cut(s)	800, 843
SmlI	CTYRAG	3 cut(s)	551, 800, 843
SmoI	CTYRAG	3 cut(s)	551, 800, 843
Sse8387I	CCTGCAGG	1 cut(s)	1069
Sse9I	AATT	3 cut(s)	214, 403, 755
SspMI	CTAG	2 cut(s)	329, 860
StyD4I	CCNGG	2 cut(s)	37, 490
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	593, 782
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	5 cut(s)	350, 407, 801, 817, 844
TasI	AATT	3 cut(s)	214, 403, 755
TatI	WGTACW	2 cut(s)	793, 982
TfiI	GAWTC	2 cut(s)	299, 914
Tru1I	TTAA	4 cut(s)	263, 288, 366, 900
Tru9I	TTAA	4 cut(s)	263, 288, 366, 900
TscAI	CASTG	1 cut(s)	911
TseFI	GTSAC	4 cut(s)	59, 593, 770, 862
TseI	GCWGC	8 cut(s)	148, 164, 281, 379, 539, 683, 962, 971
Tsp45I	GTSAC	4 cut(s)	59, 593, 770, 862
TspDTI	ATGAA	5 cut(s)	195, 333, 437, 579, 683
TspRI	CASTG	1 cut(s)	911
VpaK11BI	GGWCC	3 cut(s)	494, 1056, 1061
XapI	RAATTY	1 cut(s)	403
XceI	RCATGY	2 cut(s)	365, 584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XhoI	CTCGAG	2 cut(s)	800, 843
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	2 cut(s)	214, 324
XspI	CTAG	2 cut(s)	329, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.