Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8331037.1

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 976

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8331037.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 706 bp

ttttttatcaattcaagttttggaattcaaaccgagttgggtttcgtgacgcaggaaatgaggggattcatcatgattccggtagtgcgcccaaaggtggtcaagccgtaaaggcccagcctattgaagttccgcttataccagtagaggagctgaaggaaattacagataactttgggacaagtgccttgattggggaaggttcttatggaagagtatattttggagtacttaaaagcggggagcaggcagcaatcaagaagctcgatgccagcaaacaacctgatgaggaatatcttgcgcaggtttctatggtatcacggctgaaaaatgataattttgttcaacttcttggttactgcgttgatgggagttctcgtgttcttgcctatgagtttgcatctaatggatctcttcatgatattctacacggaaggaaaggtgtcaaaggagctcaacctggtcctgttctaacttgggcacagcgtgttaaaattgcagtgggtgctgcaagaggactcgagtatctacatgaaaaagcagtcccccatatcattcatcgcgacatcaagtccagcaatgtactaatatttgatgatgatgtcgctaagattgcagactttgatttatccaaccaagctcctgatatggcagcacgtcttcactccactcgtgttctaggaacctttggttatcatgccccaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

234

Amino Acids

25.55

Weight (kDa)

6.83

Isoelectric Point (pI)

20.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	294
AccII	CGCG	1 cut(s)	563
AciI	CCGC	2 cut(s)	133, 239
AclWI	GGATC	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	175
AdeI	CACNNNGTG	1 cut(s)	487
AfaI	GTAC	2 cut(s)	230, 584
AfiI	CCNNNNNNNGG	2 cut(s)	97, 194
AgsI	TTSAA	4 cut(s)	15, 29, 127, 346
AhdI	GACNNNNNGTC	1 cut(s)	570
AjiI	CACGTC	1 cut(s)	658
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	4 cut(s)	153, 264, 454, 640
AluI	AGCT	4 cut(s)	153, 264, 454, 640
Alw21I	GWGCWC	1 cut(s)	456
AlwI	GGATC	1 cut(s)	417
Ama87I	CYCGRG	1 cut(s)	520
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	3 cut(s)	250, 508, 652
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	90, 303
AspS9I	GGNCC	2 cut(s)	114, 463
AvaI	CYCGRG	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	483
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	2 cut(s)	377, 671
BbsI	GAAGAC	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	262, 495, 664
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	2 cut(s)	91, 337
BciT130I	CCWGG	1 cut(s)	461
BfaI	CTAG	1 cut(s)	679
BfuAI	ACCTGC	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	251, 509, 653
BlsI	GCNGC	3 cut(s)	252, 510, 654
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	1 cut(s)	463
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	520
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	114, 463
BmiI	GGNNCC	1 cut(s)	684
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	2 cut(s)	258, 409
BpiI	GAAGAC	1 cut(s)	652
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 194
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	461
BseLI	CCNNNNNNNGG	2 cut(s)	97, 194
BseMI	GCAATG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	3 cut(s)	262, 495, 664
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	2 cut(s)	192, 529
BslI	CCNNNNNNNGG	2 cut(s)	97, 194
BsmFI	GGGAC	2 cut(s)	192, 529
BsnI	GGCC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	456, 483
Bsp143I	GATC	1 cut(s)	409
Bsp68I	TCGCGA	1 cut(s)	563
BspACI	CCGC	2 cut(s)	133, 239
BspANI	GGCC	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	563
BspHI	TCATGA	2 cut(s)	72, 417
BspLI	GGNNCC	1 cut(s)	684
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	1 cut(s)	409
BssSI	CACGAG	2 cut(s)	377, 671
Bst2BI	CACGAG	2 cut(s)	377, 671
Bst2UI	CCWGG	1 cut(s)	461
Bst6I	CTCTTC	2 cut(s)	207, 419
BstAPI	GCANNNNNTGC	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	248, 273
BstDEI	CTNAG	1 cut(s)	608
BstFNI	CGCG	1 cut(s)	563
BstHHI	GCGC	2 cut(s)	90, 303
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 505, 613
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	3 cut(s)	262, 495, 664
BstV2I	GAAGAC	1 cut(s)	652
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	544
BtrI	CACGTC	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	1 cut(s)	506
BtuMI	TCGCGA	1 cut(s)	563
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	248, 273
CciI	TCATGA	2 cut(s)	72, 417
CfoI	GCGC	2 cut(s)	90, 303
Cfr13I	GGNCC	2 cut(s)	114, 463
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	229, 583
CviAII	CATG	4 cut(s)	73, 418, 532, 697
CviJI	RGCY	8 cut(s)	106, 115, 120, 153, 264, 324, 454, 640
CviKI_1	RGCY	8 cut(s)	106, 115, 120, 153, 264, 324, 454, 640
CviQI	GTAC	2 cut(s)	229, 583
DdeI	CTNAG	1 cut(s)	608
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraIII	CACNNNGTG	1 cut(s)	487
DriI	GACNNNNNGTC	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	207, 419
Eam1105I	GACNNNNNGTC	1 cut(s)	570
EarI	CTCTTC	2 cut(s)	207, 419
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	4 cut(s)	76, 421, 535, 700
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	2 cut(s)	192, 529
FatI	CATG	4 cut(s)	72, 417, 531, 696
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	251, 509, 653
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	3 cut(s)	251, 509, 653
FspBI	CTAG	1 cut(s)	679
FspI	TGCGCA	1 cut(s)	302
GlaI	GCGC	2 cut(s)	89, 302
GluI	GCNGC	3 cut(s)	251, 509, 653
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	90, 303
Hin1II	CATG	4 cut(s)	76, 421, 535, 700
Hin6I	GCGC	2 cut(s)	88, 301
HinP1I	GCGC	2 cut(s)	88, 301
HinfI	GANTC	3 cut(s)	66, 76, 518
HpaII	CCGG	1 cut(s)	80
Hpy188III	TCNNGA	6 cut(s)	46, 73, 258, 418, 562, 643
HpyAV	CCTTC	3 cut(s)	150, 193, 428
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	4 cut(s)	400, 499, 511, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 505, 613
HpyF3I	CTNAG	1 cut(s)	608
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	4 cut(s)	76, 421, 535, 700
HspAI	GCGC	2 cut(s)	88, 301
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	4 cut(s)	150, 243, 451, 645
Lsp1109I	GCAGC	3 cut(s)	262, 495, 664
LweI	GCATC	2 cut(s)	258, 409
MabI	ACCWGGT	1 cut(s)	459
MaeI	CTAG	1 cut(s)	679
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	2 cut(s)	46, 355
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	3 cut(s)	224, 406, 652
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	456, 483
MluCI	AATT	5 cut(s)	10, 24, 161, 336, 494
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	4 cut(s)	54, 141, 282, 508
MseI	TTAA	2 cut(s)	233, 491
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	3 cut(s)	112, 505, 613
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	4 cut(s)	76, 421, 535, 700
NlaIV	GGNNCC	1 cut(s)	684
NmuCI	GTSAC	1 cut(s)	46
NruI	TCGCGA	1 cut(s)	563
NsbI	TGCGCA	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	520
PagI	TCATGA	2 cut(s)	72, 417
PfeI	GAWTC	2 cut(s)	66, 76
PkrI	GCNGC	3 cut(s)	252, 510, 654
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	684
PspPI	GGNCC	2 cut(s)	114, 463
PspXI	VCTCGAGB	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	409
RruI	TCGCGA	1 cut(s)	563
RsaI	GTAC	2 cut(s)	230, 584
RsaNI	GTAC	2 cut(s)	229, 583
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	233, 491
SatI	GCNGC	3 cut(s)	251, 509, 653
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	2 cut(s)	114, 463
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	456, 483
SexAI	ACCWGGT	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	258, 409
Sfr274I	CTCGAG	1 cut(s)	520
SinI	GGWCC	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	5 cut(s)	10, 24, 161, 336, 494
SsiI	CCGC	2 cut(s)	133, 239
SspI	AATATT	1 cut(s)	590
SspMI	CTAG	1 cut(s)	679
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	459
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	2 cut(s)	266, 521
TasI	AATT	5 cut(s)	10, 24, 161, 336, 494
TatI	WGTACW	2 cut(s)	228, 582
TfiI	GAWTC	2 cut(s)	66, 76
Tru1I	TTAA	2 cut(s)	233, 491
Tru9I	TTAA	2 cut(s)	233, 491
TscAI	CASTG	1 cut(s)	506
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	250, 508, 652
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	58, 406, 547, 548
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	520
XspI	CTAG	1 cut(s)	679
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.