Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

32977231 .. 32980157

Gene Structure 2927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCTCCAAAGAAATGAGGGAAGTCATCATGCCTCCGGTAATGCGCCCAAGGGTGGTCAAGCGGTAAAGGTCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTAAAGGAAATTACAGATAACTTTGGGACAAATGCCTTGATTGGGGAAGGTTCGTATGGAAGAGTATATTATGGGGTACTTAAAAGCAGGGAGCATACAGCAATCAAGAAGCTAGATGCCAGCAAACAACCTGATGAGATGGGACCTATCTTGCAAAAAACTGTATATTCATTACACCTCCCTCCCACAGAAAAATATGTTCCTCCATTCGAGGATCCATGGAGGACTCTAAGCCACAAAACAGCATTGTTTCAAGTCGAGAAGGACCAAATGCATTACAGAGTTGCAGAACACAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

6.65

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 89
AclWI	GGATC	2 cut(s)	317, 330
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	53, 150
AgsI	TTSAA	2 cut(s)	83, 362
AluBI	AGCT	2 cut(s)	109, 220
AluI	AGCT	2 cut(s)	109, 220
AlwI	GGATC	2 cut(s)	317, 330
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	3 cut(s)	70, 251, 373
AvaII	GGWCC	3 cut(s)	70, 251, 373
BamHI	GGATCC	1 cut(s)	322
BccI	CCATC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	221
Bme18I	GGWCC	3 cut(s)	70, 251, 373
BmgT120I	GGNCC	3 cut(s)	70, 251, 373
BmiI	GGNNCC	2 cut(s)	252, 324
BmsI	GCATC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	48, 326
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 150
Bse1I	ACTGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	48, 326
BseLI	CCNNNNNNNGG	2 cut(s)	53, 150
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	148, 264
BslI	CCNNNNNNNGG	2 cut(s)	53, 150
BsmFI	GGGAC	2 cut(s)	148, 264
Bsp143I	GATC	1 cut(s)	322
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	2 cut(s)	62, 89
BspLI	GGNNCC	2 cut(s)	252, 324
BspPI	GGATC	2 cut(s)	317, 330
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	48, 326
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	48, 326
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtgI	CCRYGG	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	70, 251, 373
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	2 cut(s)	29, 327
CviJI	RGCY	4 cut(s)	76, 109, 220, 342
CviKI_1	RGCY	4 cut(s)	76, 109, 220, 342
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	48, 326
Eco47I	GGWCC	3 cut(s)	70, 251, 373
EcoO109I	RGGNCCY	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	48, 326
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	48, 326
FaeI	CATG	2 cut(s)	32, 330
FaiI	YATR	9 cut(s)	30, 95, 165, 175, 180, 204, 274, 306, 328
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	148, 264
FatI	CATG	2 cut(s)	28, 326
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	45
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	32, 330
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	214, 367
HpyAV	CCTTC	2 cut(s)	149, 364
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	262, 382, 395
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	32, 330
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	9, 106, 199
LpnPI	CCDG	6 cut(s)	49, 86, 111, 181, 241, 252
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	221
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	1 cut(s)	180
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	8 cut(s)	10, 43, 97, 296, 300, 313, 321, 324
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	1 cut(s)	189
MspI	CCGG	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	32, 330
NlaIV	GGNNCC	2 cut(s)	252, 324
NsiI	ATGCAT	1 cut(s)	384
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	252, 324
PspPI	GGNCC	3 cut(s)	70, 251, 373
PspPPI	RGGWCCY	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	3 cut(s)	70, 251, 373
SchI	GAGTC	1 cut(s)	328
SetI	ASST	7 cut(s)	72, 111, 160, 222, 241, 256, 288
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	3 cut(s)	70, 251, 373
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	2 cut(s)	62, 89
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	2 cut(s)	48, 326
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	318, 366
TasI	AATT	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TspDTI	ATGAA	1 cut(s)	267
VpaK11BI	GGWCC	3 cut(s)	70, 251, 373
XspI	CTAG	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.