Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

55591627 .. 55599170

Gene Structure 7544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG369900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTCCCAGAAAGCAACGCATCCGATGACGATGTCGTAATCCCTGATCGGCTGCGCCGTAGGGATCTGGTGCTCCTTGCCATCGCCGATCACCCCCTCCTCATCTTCAGCCCCCGAGTCAAACGACAGAATCATTTGGTGGTTTTGCTCCGAGCAGCAATCAAAATCAAAGGGGAAGTGAGCTGCTTTAGCTATTGTGATGAAGATGATATGCGTAAAGCAACTGACAATGGAGGTGCTTACATGATGAAAAATCCTGCAGGAAATGAGGGAAGTCATCATGCCTCCGGTAATGTGCCCAAGGGTGGTCAAGCGGCAAAGGTCAGGCCTATTGAAGTTCCGCTTATACAAGTAGAAGAGCTAAAGGAAATTACAGATAACTTTGGGACAAATGCCTTGATTGGGGAAGGATCCTATGGAAGATTATATTATGGGGTACTTAAAAGCAGGGAGCATGCAGCAATCAAGAAGCTAGATGCCACCAAACAACCTGATGAGATGGGACCTATCTTGCAAACGACTGTAAATTCATTACACCTTCTCCGTCCCACAGAAAAAATATGTTCCTCCATTCAAGGATCCATGCAGGCAGAGCTAGATGAGAGGAGGATTGGGATTGAAATTCACAAGCTTGGCAATTCACCAGTGGGTCCAGGCCGAGCATTTAGCATTAGTTGTCTACGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

229

Amino Acids

25.13

Weight (kDa)

7.72

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	679
AciI	CCGC	2 cut(s)	314, 341
AclWI	GGATC	5 cut(s)	72, 405, 418, 573, 586
AcsI	RAATTY	2 cut(s)	526, 621
AcuI	CTGAAG	1 cut(s)	91
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	305, 402
AgsI	TTSAA	3 cut(s)	335, 575, 620
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	6 cut(s)	183, 192, 361, 472, 595, 631
AluI	AGCT	6 cut(s)	183, 192, 361, 472, 595, 631
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	5 cut(s)	72, 405, 418, 573, 586
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	326, 655
ApeKI	GCWGC	4 cut(s)	52, 155, 183, 458
ApoI	RAATTY	2 cut(s)	526, 621
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	3 cut(s)	4, 503, 650
AsuHPI	GGTGA	2 cut(s)	83, 633
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	3 cut(s)	4, 503, 650
BaeGI	GKGCMC	1 cut(s)	300
BamHI	GGATCC	2 cut(s)	410, 578
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	4 cut(s)	39, 167, 170, 470
BccI	CCATC	2 cut(s)	89, 493
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	654
BfaI	CTAG	2 cut(s)	473, 596
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	5 cut(s)	53, 156, 184, 315, 459
BlsI	GCNGC	5 cut(s)	54, 157, 185, 316, 460
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	3 cut(s)	4, 503, 650
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	3 cut(s)	4, 503, 650
BmiI	GGNNCC	5 cut(s)	6, 412, 504, 580, 651
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	29, 466
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 402
Bse1I	ACTGG	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	305, 402
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	2 cut(s)	89, 619
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	4 cut(s)	39, 167, 170, 470
BshFI	GGCC	2 cut(s)	328, 657
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	3 cut(s)	400, 516, 531
BslI	CCNNNNNNNGG	2 cut(s)	305, 402
BsmFI	GGGAC	3 cut(s)	400, 516, 531
BsnI	GGCC	2 cut(s)	328, 657
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	75, 300
Bsp143I	GATC	5 cut(s)	46, 64, 88, 410, 578
BspACI	CCGC	2 cut(s)	314, 341
BspANI	GGCC	2 cut(s)	328, 657
BspLI	GGNNCC	5 cut(s)	6, 412, 504, 580, 651
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	5 cut(s)	72, 405, 418, 573, 586
BspQI	GCTCTTC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	5 cut(s)	46, 64, 88, 410, 578
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	456, 588
BstF5I	GGATG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	5 cut(s)	49, 67, 91, 413, 581
BstMBI	GATC	5 cut(s)	46, 64, 88, 410, 578
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 592
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	4 cut(s)	39, 167, 170, 470
BstX2I	RGATCY	3 cut(s)	64, 410, 578
BstYI	RGATCY	3 cut(s)	64, 410, 578
BsuRI	GGCC	2 cut(s)	328, 657
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	651
Cac8I	GCNNGC	2 cut(s)	456, 588
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	3 cut(s)	4, 503, 650
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	4 cut(s)	244, 281, 455, 583
CviQI	GTAC	1 cut(s)	437
DpnI	GATC	5 cut(s)	48, 66, 90, 412, 580
DpnII	GATC	5 cut(s)	46, 64, 88, 410, 578
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	328
Eco47I	GGWCC	3 cut(s)	4, 503, 650
Eco57I	CTGAAG	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	4 cut(s)	247, 284, 458, 586
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	3 cut(s)	400, 516, 531
FatI	CATG	4 cut(s)	243, 280, 454, 582
FblI	GTMKAC	1 cut(s)	679
Fnu4HI	GCNGC	5 cut(s)	53, 156, 184, 315, 459
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	5 cut(s)	53, 156, 184, 315, 459
FspBI	CTAG	2 cut(s)	473, 596
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	5 cut(s)	53, 156, 184, 315, 459
HaeIII	GGCC	2 cut(s)	328, 657
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	247, 284, 458, 586
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	2 cut(s)	117, 130
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	83, 633
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	2 cut(s)	25, 152
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	2 cut(s)	401, 548
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	4 cut(s)	260, 458, 514, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 592
Hsp92II	CATG	4 cut(s)	247, 284, 458, 586
HspAI	GCGC	1 cut(s)	55
Kzo9I	GATC	5 cut(s)	46, 64, 88, 410, 578
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	78, 153, 451
Lsp1109I	GCAGC	4 cut(s)	39, 167, 170, 470
LweI	GCATC	2 cut(s)	29, 466
MaeI	CTAG	2 cut(s)	473, 596
MalI	GATC	5 cut(s)	48, 66, 90, 412, 580
MboI	GATC	5 cut(s)	46, 64, 88, 410, 578
MboII	GAAGA	4 cut(s)	97, 215, 368, 432
MflI	RGATCY	3 cut(s)	64, 410, 578
MhlI	GDGCHC	2 cut(s)	75, 300
MluCI	AATT	4 cut(s)	369, 526, 621, 637
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	107, 110, 227, 262, 295, 577, 597, 600
MseI	TTAA	1 cut(s)	441
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	189, 592
NdeII	GATC	5 cut(s)	46, 64, 88, 410, 578
NlaIII	CATG	4 cut(s)	247, 284, 458, 586
NlaIV	GGNNCC	5 cut(s)	6, 412, 504, 580, 651
NmeAIII	GCCGAG	1 cut(s)	683
NspI	RCATGY	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	54, 157, 185, 316, 460
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	5 cut(s)	6, 412, 504, 580, 651
PspPI	GGNCC	3 cut(s)	4, 503, 650
PspPPI	RGGWCCY	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	3 cut(s)	64, 410, 578
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	5 cut(s)	53, 156, 184, 315, 459
Sau3AI	GATC	5 cut(s)	46, 64, 88, 410, 578
Sau96I	GGNCC	3 cut(s)	4, 503, 650
SbfI	CCTGCAGG	1 cut(s)	262
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	654
SdaI	CCTGCAGG	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	75, 300
SfaNI	GCATC	2 cut(s)	29, 466
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	3 cut(s)	4, 503, 650
SphI	GCATGC	1 cut(s)	458
Sse8387I	CCTGCAGG	1 cut(s)	262
Sse9I	AATT	4 cut(s)	369, 526, 621, 637
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	314, 341
SspMI	CTAG	2 cut(s)	473, 596
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	523
TasI	AATT	4 cut(s)	369, 526, 621, 637
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	651
TseI	GCWGC	4 cut(s)	52, 155, 183, 458
TspDTI	ATGAA	3 cut(s)	216, 263, 519
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	1 cut(s)	651
Tth111I	GACNNNGTC	1 cut(s)	32
VpaK11BI	GGWCC	3 cut(s)	4, 503, 650
XapI	RAATTY	2 cut(s)	526, 621
XceI	RCATGY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	679
XspI	CTAG	2 cut(s)	473, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.