FvH4_1g26420
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18271241 .. 18274641
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26420.t1

Sequence Viewer

Length: 1089 bp
ATGAGCTGCTTCAGCTGTTGTGATGAAGATGATATGCATAAAGCTACTGACAATGGAGGTCCTTACATGATGAAAAACCCTGCAGGGAATGAGGGAAGTCTTCATGCCTCTGGTAATGCGCCCAGGGGTGGTCAAGCCGTAAAGGTCCAGCCTATTGAGGTTCCGCTTATACCGGTAGAGGAGCTAAAGGAGATTACGGATAACTTCGGGACAAATGCCTTGATTGGGGAAGGTTCGTATGGAAGAGTATATTATGGGGTACTAAAAAGTGGGGAGCATGCAGCAATCAAGAAGCTAGATGCCAGCAAACAACCTGATGAGGAATATCTTGCACAGGTTTCTATGGTATCACGGCTGAAACATGATAATTTTGTTCAACTGCTTGGTTACTGTGTGGATGGAAATTCTCGTGTTCTTGCCTACGAGTTTGCATCTAATGGATCTCTCCATGATATTCTACATGGAAGGAAAGGTGTCAAAGGAGCTCAACCTGGTCCTGTTCTAACCTGGGCACAACGTGTTAAAATTGCAGTGGGTGCTGCCAGAGGACTCGAGTATTTACATGAGAAGGCGGATCCCCATATCATTCATCGCGACATCAAGTCCAGCAATGTACTAATATTTGATGATGATGTTGCTAAGATTGCAGACTTTGATTTATCCAATCAAGCTCCTGATATGGCAGCACGTCTTCACTCTACTCGTGTTCTTGGAACCTTTGGTTATCACGCCCCAGAATATGCGATGACTGGACAGTTGAATGCCAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTGCTAGAGCTCTTGACTGGAAGAAAACCTGTTGATCATACATTACCACGGGGACAGCAGAGCCTAGTGACATGGGCTACACCAAAACTCAGTGAAGACAAAGTTAGGCAGTGTGTTGATGCAAGACTAGGAGGAGAATTCCCCGCAAAGGCTGTTGCGAAGATGGCGGCTGTTGCTGCCTTGTGTGTGCAATATGAAGCTGATTTCCGCCCAAACATGAGCATTGTGGTCAAAGCCCTACAACCCCTGCTAAATGCTCGGCCTGGACCCACTGGTGAATCTCCAAGCTTGTGA

Protein Analysis

363

Amino Acids

39.15

Weight (kDa)

6.31

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 72 - 279 5.5e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 73 - 345 1.5e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 594
AciI CCGC 5 cut(s) 164, 572, 939, 962, 1003
AclWI GGATC 3 cut(s) 448, 569, 582
AcsI RAATTY 2 cut(s) 403, 932
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 2 cut(s) 261, 615
AfiI CCNNNNNNNGG 3 cut(s) 128, 225, 943
AflIII ACRYGT 1 cut(s) 517
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 2 cut(s) 377, 760
AhdI GACNNNNNGTC 1 cut(s) 601
AjiI CACGTC 1 cut(s) 689
AjnI CCWGG 4 cut(s) 122, 490, 506, 1057
Alw21I GWGCWC 2 cut(s) 487, 807
AlwI GGATC 3 cut(s) 448, 569, 582
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 1 cut(s) 1055
ApeKI GCWGC 6 cut(s) 6, 281, 539, 683, 796, 971
ApoI RAATTY 2 cut(s) 403, 932
AsiGI ACCGGT 1 cut(s) 172
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 4 cut(s) 59, 145, 494, 1061
AsuHPI GGTGA 1 cut(s) 1082
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 4 cut(s) 59, 145, 494, 1061
BaeGI GKGCMC 1 cut(s) 514
BamHI GGATCC 1 cut(s) 574
BanII GRGCYC 2 cut(s) 487, 807
BauI CACGAG 2 cut(s) 408, 702
BbsI GAAGAC 3 cut(s) 92, 683, 897
Bbv12I GWGCWC 2 cut(s) 487, 807
BbvI GCAGC 5 cut(s) 293, 526, 695, 783, 958
BccI CCATC 2 cut(s) 392, 952
BceAI ACGGC 2 cut(s) 122, 368
BciT130I CCWGG 4 cut(s) 124, 492, 508, 1059
BclI TGATCA 1 cut(s) 829
BfaI CTAG 4 cut(s) 296, 800, 860, 923
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 7 cut(s) 7, 282, 540, 684, 797, 963, 972
BlsI GCNGC 7 cut(s) 8, 283, 541, 685, 798, 964, 973
Bme1390I CCNGG 4 cut(s) 124, 492, 508, 1059
Bme18I GGWCC 4 cut(s) 59, 145, 494, 1061
BmeRI GACNNNNNGTC 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 551
BmgBI CACGTC 1 cut(s) 689
BmgT120I GGNCC 4 cut(s) 59, 145, 494, 1061
BmiI GGNNCC 4 cut(s) 162, 576, 715, 1063
BmrFI CCNGG 4 cut(s) 124, 492, 508, 1059
BmsI GCATC 3 cut(s) 289, 440, 904
BpiI GAAGAC 3 cut(s) 92, 683, 897
BsaJI CCNNGG 4 cut(s) 122, 123, 507, 842
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 225, 943
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 3 cut(s) 754, 817, 1072
Bse3DI GCAATG 1 cut(s) 616
BseBI CCWGG 4 cut(s) 124, 492, 508, 1059
BseDI CCNNGG 4 cut(s) 122, 123, 507, 842
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 3 cut(s) 128, 225, 943
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 1 cut(s) 898
BseNI ACTGG 3 cut(s) 754, 817, 1072
BseRI GAGGAG 2 cut(s) 194, 942
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 5 cut(s) 293, 526, 695, 783, 958
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 1 cut(s) 1057
BshTI ACCGGT 1 cut(s) 172
BsiHKAI GWGCWC 2 cut(s) 487, 807
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 223, 861
BslI CCNNNNNNNGG 3 cut(s) 128, 225, 943
BsmFI GGGAC 2 cut(s) 223, 861
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 1 cut(s) 1057
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 3 cut(s) 487, 514, 807
Bsp143I GATC 3 cut(s) 440, 574, 829
Bsp68I TCGCGA 1 cut(s) 594
BspACI CCGC 5 cut(s) 164, 572, 939, 962, 1003
BspANI GGCC 1 cut(s) 1057
BspCNI CTCAG 1 cut(s) 897
BspFNI CGCG 1 cut(s) 594
BspLI GGNNCC 4 cut(s) 162, 576, 715, 1063
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 3 cut(s) 448, 569, 582
BsrDI GCAATG 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 3 cut(s) 754, 817, 1072
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 4 cut(s) 122, 123, 507, 842
BssMI GATC 3 cut(s) 440, 574, 829
BssSI CACGAG 2 cut(s) 408, 702
Bst2BI CACGAG 2 cut(s) 408, 702
Bst2UI CCWGG 4 cut(s) 124, 492, 508, 1059
Bst4CI ACNGT 3 cut(s) 392, 756, 782
Bst6I CTCTTC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 279, 304
BstDEI CTNAG 2 cut(s) 639, 884
BstDSI CCRYGG 1 cut(s) 842
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 1 cut(s) 594
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 443, 577, 832
BstMBI GATC 3 cut(s) 440, 574, 829
BstMWI GCNNNNNNNGC 7 cut(s) 12, 536, 644, 802, 959, 968, 971
BstNI CCWGG 4 cut(s) 124, 492, 508, 1059
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 4 cut(s) 122, 490, 506, 1057
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 514
BstUI CGCG 1 cut(s) 594
BstV1I GCAGC 5 cut(s) 293, 526, 695, 783, 958
BstV2I GAAGAC 3 cut(s) 92, 683, 897
BstX2I RGATCY 2 cut(s) 440, 574
BstYI RGATCY 2 cut(s) 440, 574
BsuRI GGCC 1 cut(s) 1057
BtgI CCRYGG 1 cut(s) 842
BtgZI GCGATG 2 cut(s) 575, 758
BtrI CACGTC 1 cut(s) 689
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 2 cut(s) 537, 911
BtsIMutI CAGTG 4 cut(s) 537, 892, 911, 1065
BtuMI TCGCGA 1 cut(s) 594
Cac8I GCNNGC 2 cut(s) 279, 304
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 4 cut(s) 59, 145, 494, 1061
CsiI ACCWGGT 1 cut(s) 490
Csp6I GTAC 2 cut(s) 260, 614
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 9 cut(s) 67, 104, 278, 362, 449, 461, 563, 867, 1012
CviQI GTAC 2 cut(s) 260, 614
DdeI CTNAG 2 cut(s) 639, 884
DpnI GATC 3 cut(s) 442, 576, 831
DpnII GATC 3 cut(s) 440, 574, 829
DraIII CACNNNGTG 1 cut(s) 518
DriI GACNNNNNGTC 1 cut(s) 601
Eam1104I CTCTTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 238
EciI GGCGGA 2 cut(s) 587, 992
Ecl136II GAGCTC 2 cut(s) 485, 805
Eco24I GRGCYC 2 cut(s) 487, 807
Eco47I GGWCC 4 cut(s) 59, 145, 494, 1061
Eco53kI GAGCTC 2 cut(s) 485, 805
Eco88I CYCGRG 1 cut(s) 551
EcoICRI GAGCTC 2 cut(s) 485, 805
EcoO109I RGGNCCY 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 932
EcoRII CCWGG 4 cut(s) 122, 490, 506, 1057
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 487, 807
FaeI CATG 9 cut(s) 70, 107, 281, 365, 452, 464, 566, 870, 1015
FaqI GGGAC 2 cut(s) 223, 861
FatI CATG 9 cut(s) 66, 103, 277, 361, 448, 460, 562, 866, 1011
FauI CCCGC 1 cut(s) 946
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 7 cut(s) 7, 282, 540, 684, 797, 963, 972
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 2 cut(s) 487, 807
Fsp4HI GCNGC 7 cut(s) 7, 282, 540, 684, 797, 963, 972
FspBI CTAG 4 cut(s) 296, 800, 860, 923
GlaI GCGC 1 cut(s) 120
GluI GCNGC 7 cut(s) 7, 282, 540, 684, 797, 963, 972
HaeIII GGCC 1 cut(s) 1057
HapII CCGG 1 cut(s) 173
HhaI GCGC 1 cut(s) 121
Hin1II CATG 9 cut(s) 70, 107, 281, 365, 452, 464, 566, 870, 1015
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 1081
HinfI GANTC 2 cut(s) 549, 1073
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 1082
Hpy166II GTNNAC 1 cut(s) 778
Hpy188III TCNNGA 5 cut(s) 208, 289, 593, 674, 808
Hpy8I GTNNAC 1 cut(s) 778
HpyAV CCTTC 3 cut(s) 224, 459, 562
HpyCH4III ACNGT 3 cut(s) 392, 756, 782
HpyCH4IV ACGT 2 cut(s) 517, 688
HpyCH4V TGCA 9 cut(s) 37, 83, 281, 332, 431, 530, 647, 917, 985
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 536, 644, 802, 959, 968, 971
HpyF3I CTNAG 2 cut(s) 639, 884
HpySE526I ACGT 2 cut(s) 517, 688
Hsp92II CATG 9 cut(s) 70, 107, 281, 365, 452, 464, 566, 870, 1015
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 3 cut(s) 440, 574, 829
LmnI GCTCC 4 cut(s) 181, 274, 482, 676
Lsp1109I GCAGC 5 cut(s) 293, 526, 695, 783, 958
LweI GCATC 3 cut(s) 289, 440, 904
MabI ACCWGGT 1 cut(s) 490
MaeI CTAG 4 cut(s) 296, 800, 860, 923
MaeII ACGT 2 cut(s) 517, 688
MaeIII GTNAC 2 cut(s) 386, 862
MalI GATC 3 cut(s) 442, 576, 831
MboI GATC 3 cut(s) 440, 574, 829
MboII GAAGA 7 cut(s) 38, 92, 255, 683, 828, 902, 967
MflI RGATCY 2 cut(s) 440, 574
MhlI GDGCHC 3 cut(s) 487, 514, 807
MluCI AATT 4 cut(s) 367, 403, 525, 932
MlyI GAGTC 1 cut(s) 543
MnlI CCTC 8 cut(s) 50, 85, 118, 151, 172, 313, 539, 920
Mph1103I ATGCAT 1 cut(s) 39
MseI TTAA 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 4 cut(s) 124, 492, 508, 1059
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 4 cut(s) 124, 492, 508, 1059
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 7 cut(s) 12, 536, 644, 802, 959, 968, 971
NdeII GATC 3 cut(s) 440, 574, 829
NlaIII CATG 9 cut(s) 70, 107, 281, 365, 452, 464, 566, 870, 1015
NlaIV GGNNCC 4 cut(s) 162, 576, 715, 1063
NmeAIII GCCGAG 1 cut(s) 1033
NmuCI GTSAC 1 cut(s) 862
NruI TCGCGA 1 cut(s) 594
NsiI ATGCAT 1 cut(s) 39
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 551
PasI CCCWGGG 1 cut(s) 123
PctI GAATGC 1 cut(s) 766
PfeI GAWTC 1 cut(s) 1073
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 7 cut(s) 8, 283, 541, 685, 798, 964, 973
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
PpuMI RGGWCCY 1 cut(s) 59
Psp124BI GAGCTC 2 cut(s) 487, 807
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 4 cut(s) 122, 490, 506, 1057
PspGI CCWGG 4 cut(s) 122, 490, 506, 1057
PspN4I GGNNCC 4 cut(s) 162, 576, 715, 1063
PspPI GGNCC 4 cut(s) 59, 145, 494, 1061
PspPPI RGGWCCY 1 cut(s) 59
PspXI VCTCGAGB 1 cut(s) 551
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 440, 574
PvuII CAGCTG 1 cut(s) 15
RruI TCGCGA 1 cut(s) 594
RsaI GTAC 2 cut(s) 261, 615
RsaNI GTAC 2 cut(s) 260, 614
SacI GAGCTC 2 cut(s) 487, 807
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 7 cut(s) 7, 282, 540, 684, 797, 963, 972
Sau3AI GATC 3 cut(s) 440, 574, 829
Sau96I GGNCC 4 cut(s) 59, 145, 494, 1061
SbfI CCTGCAGG 1 cut(s) 85
SchI GAGTC 1 cut(s) 543
ScrFI CCNGG 4 cut(s) 124, 492, 508, 1059
SdaI CCTGCAGG 1 cut(s) 85
SduI GDGCHC 3 cut(s) 487, 514, 807
SexAI ACCWGGT 1 cut(s) 490
SfaNI GCATC 3 cut(s) 289, 440, 904
SfcI CTRYAG 1 cut(s) 81
Sfr274I CTCGAG 1 cut(s) 551
SinI GGWCC 4 cut(s) 59, 145, 494, 1061
SlaI CTCGAG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SphI GCATGC 1 cut(s) 281
Sse8387I CCTGCAGG 1 cut(s) 85
Sse9I AATT 4 cut(s) 367, 403, 525, 932
SsiI CCGC 5 cut(s) 164, 572, 939, 962, 1003
SspI AATATT 1 cut(s) 621
SspMI CTAG 4 cut(s) 296, 800, 860, 923
SstI GAGCTC 2 cut(s) 487, 807
StyD4I CCNGG 4 cut(s) 122, 490, 506, 1057
TaaI ACNGT 3 cut(s) 392, 756, 782
TaiI ACGT 2 cut(s) 520, 691
TaqI TCGA 1 cut(s) 552
TasI AATT 4 cut(s) 367, 403, 525, 932
TatI WGTACW 1 cut(s) 613
TauI GCSGC 1 cut(s) 965
TfiI GAWTC 1 cut(s) 1073
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 4 cut(s) 537, 892, 911, 1072
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 6 cut(s) 6, 281, 539, 683, 796, 971
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 5 cut(s) 39, 86, 92, 578, 1005
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 4 cut(s) 537, 892, 911, 1072
VpaK11BI GGWCC 4 cut(s) 59, 145, 494, 1061
XapI RAATTY 2 cut(s) 403, 932
XceI RCATGY 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 551
XspI CTAG 4 cut(s) 296, 800, 860, 923
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.