Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

53734925 .. 53735866

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034754

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGCTGCTTCAGCTGTCGTGATGAAGATGATATGCATAAAGCAACTGACAATGGAGGTGCTTACATGATAAAAAGTCCTGCAGGAAATGAGGAAAGTCATCATGCCTCCGGTTATGCGCCCAAGGGTGGTCAAGCGGTAAAGGTCCGACTTATTGAAGTTCCGCTTATACCAGTAGAAAAGCTAAAGGAAATTACAGATGACTTTGGGACAAATGCCTTGATTGGGGAAGGTTCGTATGGAAGAGTATACTATGGGGTACTTAAAAGCAGGGAGCATGCAGCAATCAAGAAGCTAGATGCCAGCAAACAACCTGATGAGATTTCTATGGTATCATGGCTGAAACATGATAATTTTGTTCAACTGCTTGGTTATTGTTTTGATGGGAATTCTCGTGTTCTTGCCTACGAGTTTGCATCTAATGGATCTTTTCATGATATTCTACATGCCTCTGGACTTTGCTCACCCTTCTTTGCCAATATCTCATCTGGTATCTATTTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

169

Amino Acids

18.37

Weight (kDa)

5.76

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 154	1.6e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	73 - 151	4.4e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	2 cut(s)	137, 164
AclWI	GGATC	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	128, 225
AgsI	TTSAA	2 cut(s)	158, 362
AluBI	AGCT	4 cut(s)	6, 15, 184, 295
AluI	AGCT	4 cut(s)	6, 15, 184, 295
AlwI	GGATC	1 cut(s)	433
ApeKI	GCWGC	2 cut(s)	6, 281
ApoI	RAATTY	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	456
AvaII	GGWCC	1 cut(s)	145
BauI	CACGAG	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	7, 282
BlsI	GCNGC	2 cut(s)	8, 283
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmsI	GCATC	2 cut(s)	289, 425
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 225
Bse1I	ACTGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	128, 225
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	128, 225
BsmFI	GGGAC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	425
BspACI	CCGC	2 cut(s)	137, 164
BspHI	TCATGA	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	425
BssNAI	GTATAC	1 cut(s)	250
BssSI	CACGAG	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	123
Bst1107I	GTATAC	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	279, 304
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	425
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNSI	RCATGY	2 cut(s)	281, 449
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BstZ17I	GTATAC	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	279, 304
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	7 cut(s)	67, 104, 278, 336, 347, 434, 446
CviJI	RGCY	5 cut(s)	6, 15, 184, 295, 340
CviKI_1	RGCY	5 cut(s)	6, 15, 184, 295, 340
CviQI	GTAC	1 cut(s)	260
DpnI	GATC	1 cut(s)	427
DpnII	GATC	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	7 cut(s)	70, 107, 281, 339, 350, 437, 449
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	7 cut(s)	66, 103, 277, 335, 346, 433, 445
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	7, 282
Fsp4HI	GCNGC	2 cut(s)	7, 282
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	7, 282
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	7 cut(s)	70, 107, 281, 339, 350, 437, 449
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	456
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	4 cut(s)	20, 289, 434, 453
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	224, 478
HpyCH4V	TGCA	4 cut(s)	37, 83, 281, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
Hsp92II	CATG	7 cut(s)	70, 107, 281, 339, 350, 437, 449
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	425
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	69, 93, 124, 186, 256, 316, 327, 438, 474
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	2 cut(s)	289, 425
MaeI	CTAG	1 cut(s)	296
MalI	GATC	1 cut(s)	427
MboI	GATC	1 cut(s)	425
MboII	GAAGA	2 cut(s)	38, 255
MflI	RGATCY	1 cut(s)	425
MluCI	AATT	3 cut(s)	192, 352, 388
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	50, 85, 118, 460
Mph1103I	ATGCAT	1 cut(s)	39
MseI	TTAA	2 cut(s)	264, 500
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	1 cut(s)	425
NlaIII	CATG	7 cut(s)	70, 107, 281, 339, 350, 437, 449
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	2 cut(s)	281, 449
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	8, 283
PspPI	GGNCC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	264, 500
SatI	GCNGC	2 cut(s)	7, 282
Sau3AI	GATC	1 cut(s)	425
Sau96I	GGNCC	1 cut(s)	145
SbfI	CCTGCAGG	1 cut(s)	85
SdaI	CCTGCAGG	1 cut(s)	85
SetI	ASST	8 cut(s)	8, 17, 61, 147, 186, 235, 297, 316
SfaNI	GCATC	2 cut(s)	289, 425
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	145
SphI	GCATGC	1 cut(s)	281
Sse8387I	CCTGCAGG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	192, 352, 388
SsiI	CCGC	2 cut(s)	137, 164
SspMI	CTAG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	123
TasI	AATT	3 cut(s)	192, 352, 388
Tru1I	TTAA	2 cut(s)	264, 500
Tru9I	TTAA	2 cut(s)	264, 500
TseI	GCWGC	2 cut(s)	6, 281
TspDTI	ATGAA	2 cut(s)	39, 422
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	388
XceI	RCATGY	2 cut(s)	281, 449
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.