Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

54607139 .. 54609237

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32999

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCGTAAAGCAACTGACAATGGAGGTGCTTACATGATGAAAAATCCTGCAGGAAATGAGGGAAGTCATCATGCCTCCGGTAATGTGCCCAAGGGTGGTCAAGCGGCAAAGGTCAGGCCTATTGAAGTTCCGCTTATACAAGTAGAAGAGCTAAAGGAAATTACAGATAACTTTGGGACAAATGCCTTGATTGGGGAAGGATCCTATGGAAGATTATATTATGGGGTACTTAAAAGCAGGGAGCATGCAGCAATCAAGAAGCTAGATGCCACCAAACAACCTGATGAGATGGGACCTATCTTGCAAACGACTGTAAATTCATTACACCTTCTCCGTCCCACAGAAAAAATATGTTCCTCCATTCAAGGATCCATGCAGGTTTTGGTGACTGCATATTTGATTTTCTTGTCCACTACTGCAAAACGTGAAATTTGTATACCTTTATTCTATTATCATTCAAAATTTGGCTGCAAGTTCCACTATGCTTTGGGTTTGAAAAAGATGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

169

Amino Acids

18.63

Weight (kDa)

9.32

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	2 cut(s)	104, 131
AclWI	GGATC	4 cut(s)	195, 208, 363, 376
AcsI	RAATTY	3 cut(s)	316, 429, 461
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	95, 192
AgsI	TTSAA	4 cut(s)	125, 365, 459, 496
AluBI	AGCT	2 cut(s)	151, 262
AluI	AGCT	2 cut(s)	151, 262
AlwI	GGATC	4 cut(s)	195, 208, 363, 376
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	248, 468
ApoI	RAATTY	3 cut(s)	316, 429, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	90
BamHI	GGATCC	2 cut(s)	200, 368
BbvI	GCAGC	2 cut(s)	260, 455
BccI	CCATC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	3 cut(s)	105, 249, 469
BlsI	GCNGC	3 cut(s)	106, 250, 470
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	3 cut(s)	202, 294, 370
BmsI	GCATC	2 cut(s)	256, 492
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 192
BseDI	CCNNGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	95, 192
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	260, 455
BshFI	GGCC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	3 cut(s)	190, 306, 321
BslI	CCNNNNNNNGG	2 cut(s)	95, 192
BsmFI	GGGAC	3 cut(s)	190, 306, 321
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	200, 368
BspACI	CCGC	2 cut(s)	104, 131
BspANI	GGCC	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	202, 294, 370
BspMAI	CTGCAG	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	4 cut(s)	195, 208, 363, 376
BspQI	GCTCTTC	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	200, 368
BssNAI	GTATAC	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	90
Bst1107I	GTATAC	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	203, 371
BstMBI	GATC	2 cut(s)	200, 368
BstNSI	RCATGY	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	260, 455
BstX2I	RGATCY	2 cut(s)	200, 368
BstYI	RGATCY	2 cut(s)	200, 368
BstZ17I	GTATAC	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	4 cut(s)	34, 71, 245, 373
CviJI	RGCY	4 cut(s)	118, 151, 262, 468
CviKI_1	RGCY	4 cut(s)	118, 151, 262, 468
CviQI	GTAC	1 cut(s)	227
DpnI	GATC	2 cut(s)	202, 370
DpnII	GATC	2 cut(s)	200, 368
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	4 cut(s)	37, 74, 248, 376
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	3 cut(s)	190, 306, 321
FatI	CATG	4 cut(s)	33, 70, 244, 372
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	105, 249, 469
Fsp4HI	GCNGC	3 cut(s)	105, 249, 469
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	3 cut(s)	105, 249, 469
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	4 cut(s)	37, 74, 248, 376
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	2 cut(s)	411, 437
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	411, 437
HpyAV	CCTTC	2 cut(s)	191, 338
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	8 cut(s)	50, 248, 304, 376, 392, 419, 471, 505
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	4 cut(s)	37, 74, 248, 376
Kzo9I	GATC	2 cut(s)	200, 368
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	36, 60, 91, 100, 223, 294, 362
Lsp1109I	GCAGC	2 cut(s)	260, 455
LweI	GCATC	2 cut(s)	256, 492
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	202, 370
MboI	GATC	2 cut(s)	200, 368
MboII	GAAGA	2 cut(s)	158, 222
MflI	RGATCY	2 cut(s)	200, 368
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	4 cut(s)	159, 316, 429, 461
MnlI	CCTC	4 cut(s)	17, 52, 85, 367
MseI	TTAA	1 cut(s)	231
MspI	CCGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	200, 368
NlaIII	CATG	4 cut(s)	37, 74, 248, 376
NlaIV	GGNNCC	3 cut(s)	202, 294, 370
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	141
PkrI	GCNGC	3 cut(s)	106, 250, 470
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
PspN4I	GGNNCC	3 cut(s)	202, 294, 370
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	2 cut(s)	200, 368
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	105, 249, 469
Sau3AI	GATC	2 cut(s)	200, 368
Sau96I	GGNCC	1 cut(s)	293
SbfI	CCTGCAGG	1 cut(s)	52
SdaI	CCTGCAGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	2 cut(s)	256, 492
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	293
SphI	GCATGC	1 cut(s)	248
Sse8387I	CCTGCAGG	1 cut(s)	52
Sse9I	AATT	4 cut(s)	159, 316, 429, 461
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	2 cut(s)	104, 131
SspMI	CTAG	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	427
TasI	AATT	4 cut(s)	159, 316, 429, 461
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	248, 468
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	53, 309
TspGWI	ACGGA	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	3 cut(s)	316, 429, 461
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	436
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.