Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

54838611 .. 54850185

Gene Structure 11575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG354300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAAGCCGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAACATGGATTTAGTCGCCAAGGTTTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGAAGCACTTGGACGGGTTGATCTACTTATGCAAAGTGGGTGTGCACCTGAGTTTGATAGCCTCTTATCTCTGCTTGCTGAAAAAGGAAAGACCATTGCAGCTGTTAAGCTATTAGATTTTTGCCTTGAGAGAGATTGCATGGTAGATTTTTCAAGCTATGATAAGGTGTTAGATGGTCTCTTAGCATCAGGAAAGACTCTAAATGCATACTCAATTTTGTGTAAAATAATGGAGAATGGAGGGGTTACTGAGTGGCATTGCACTGATGATCTGATCAAGAGCCTCAATCTAGACTCTAGAGGGGCTCGAGAGCTAAGTCAGAATCATTTGGTGGTTTTGCTCCGAGCAGCAATCAAAATCAAAGGGGAAGTGAGCTGCTTTAGCTATTGTGATGAAGATGATATGCGTAAAGCAACTGACAATGGAGGTGCTTACATGATGAAAAATCCTGCAGGAAATGAGGGAAGTCATCATGCCTCCGGTAATGTGCCCAAGGGTGGTCAAGCGGCAAAGGTCAGGCCTATTGAAGTTCCGCTTATACAAGTAGAAGAGCTAAAGGAAATTACAGATAACTTTGGGACAAATGCCTTGATTGGGGAAGGATCCTATGGAAGATTATATTATGGGGTACTTAAAAGCAGGGAGCATGCAGCAATCAAGAAGCTAGATGCCACCAAACAACCTGATGAGATGGGACCTATCTTGCAAACGACTGTAAATTCATTACACCTTCTCCGTCCCACAGAAAAAATATGTTCCTCCATTCAAGGATCCATGCAGGCAGAGCTAGATGAGAGGAGGATTGGGATTGAAATTCACAAGCTTGGCAATTCACCAGTGGGTCCAGGCCGAGCATTTAGCATTAGTTGTCTACGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

328

Amino Acids

35.8

Weight (kDa)

5.96

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	976
AccII	CGCG	1 cut(s)	12
AciI	CCGC	3 cut(s)	10, 611, 638
AclWI	GGATC	4 cut(s)	702, 715, 870, 883
AcsI	RAATTY	2 cut(s)	823, 918
AfaI	GTAC	1 cut(s)	735
AfiI	CCNNNNNNNGG	2 cut(s)	602, 699
AgsI	TTSAA	4 cut(s)	258, 632, 872, 917
AjnI	CCWGG	1 cut(s)	949
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	287
Alw44I	GTGCAC	1 cut(s)	147
AlwI	GGATC	4 cut(s)	702, 715, 870, 883
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	2 cut(s)	623, 952
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	4 cut(s)	203, 452, 480, 755
ApoI	RAATTY	2 cut(s)	823, 918
AspS9I	GGNCC	2 cut(s)	800, 947
AsuHPI	GGTGA	1 cut(s)	930
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	2 cut(s)	800, 947
BaeGI	GKGCMC	2 cut(s)	151, 597
BamHI	GGATCC	2 cut(s)	707, 875
BanII	GRGCYC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	4 cut(s)	215, 464, 467, 767
BccI	CCATC	2 cut(s)	272, 790
BciT130I	CCWGG	1 cut(s)	951
BclI	TGATCA	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	4 cut(s)	395, 402, 770, 893
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	6 cut(s)	10, 204, 453, 481, 612, 756
BlsI	GCNGC	6 cut(s)	11, 205, 454, 482, 613, 757
Bme1390I	CCNGG	1 cut(s)	951
Bme18I	GGWCC	2 cut(s)	800, 947
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	800, 947
BmiI	GGNNCC	4 cut(s)	709, 801, 877, 948
BmrFI	CCNGG	1 cut(s)	951
BmsI	GCATC	2 cut(s)	299, 763
BpuEI	CTTGAG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	66, 597
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	2 cut(s)	602, 699
Bse1I	ACTGG	1 cut(s)	941
Bse3DI	GCAATG	2 cut(s)	198, 361
BseBI	CCWGG	1 cut(s)	951
BseDI	CCNNGG	2 cut(s)	66, 597
BseLI	CCNNNNNNNGG	2 cut(s)	602, 699
BseMI	GCAATG	2 cut(s)	198, 361
BseMII	CTCAG	2 cut(s)	144, 345
BseNI	ACTGG	1 cut(s)	941
BseRI	GAGGAG	1 cut(s)	916
BseSI	GKGCMC	2 cut(s)	151, 597
BseXI	GCAGC	4 cut(s)	215, 464, 467, 767
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	625, 954
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	3 cut(s)	697, 813, 828
BslI	CCNNNNNNNGG	2 cut(s)	602, 699
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	3 cut(s)	697, 813, 828
BsnI	GGCC	2 cut(s)	625, 954
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	3 cut(s)	151, 412, 597
Bsp143I	GATC	5 cut(s)	124, 373, 378, 707, 875
BspACI	CCGC	3 cut(s)	10, 611, 638
BspANI	GGCC	2 cut(s)	625, 954
BspCNI	CTCAG	2 cut(s)	145, 346
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	4 cut(s)	709, 801, 877, 948
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	4 cut(s)	702, 715, 870, 883
BspQI	GCTCTTC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	198, 361
BsrI	ACTGG	1 cut(s)	941
BssECI	CCNNGG	2 cut(s)	66, 597
BssMI	GATC	5 cut(s)	124, 373, 378, 707, 875
BssT1I	CCWWGG	2 cut(s)	66, 597
Bst2UI	CCWGG	1 cut(s)	951
Bst4CI	ACNGT	1 cut(s)	820
Bst6I	CTCTTC	2 cut(s)	14, 648
BstC8I	GCNNGC	4 cut(s)	7, 180, 753, 885
BstDEI	CTNAG	4 cut(s)	153, 286, 354, 419
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	5 cut(s)	127, 376, 381, 710, 878
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	5 cut(s)	124, 373, 378, 707, 875
BstMWI	GCNNNNNNNGC	2 cut(s)	486, 889
BstNI	CCWGG	1 cut(s)	951
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	949
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	2 cut(s)	151, 597
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	4 cut(s)	215, 464, 467, 767
BstX2I	RGATCY	2 cut(s)	707, 875
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	2 cut(s)	707, 875
BsuRI	GGCC	2 cut(s)	625, 954
BtsIMutI	CAGTG	2 cut(s)	366, 948
Cac8I	GCNNGC	4 cut(s)	7, 180, 753, 885
Cfr13I	GGNCC	2 cut(s)	800, 947
Csp6I	GTAC	1 cut(s)	734
CviAII	CATG	7 cut(s)	52, 98, 244, 541, 578, 752, 880
CviQI	GTAC	1 cut(s)	734
DdeI	CTNAG	4 cut(s)	153, 286, 354, 419
DpnI	GATC	5 cut(s)	126, 375, 380, 709, 877
DpnII	GATC	5 cut(s)	124, 373, 378, 707, 875
Eam1104I	CTCTTC	2 cut(s)	14, 648
EarI	CTCTTC	2 cut(s)	14, 648
Eco130I	CCWWGG	2 cut(s)	66, 597
Eco147I	AGGCCT	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	800, 947
Eco88I	CYCGRG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	949
EcoT14I	CCWWGG	2 cut(s)	66, 597
EcoT22I	ATGCAT	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	66, 597
FaeI	CATG	7 cut(s)	55, 101, 247, 544, 581, 755, 883
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	3 cut(s)	697, 813, 828
FatI	CATG	7 cut(s)	51, 97, 243, 540, 577, 751, 879
FbaI	TGATCA	1 cut(s)	378
FblI	GTMKAC	1 cut(s)	976
Fnu4HI	GCNGC	6 cut(s)	10, 204, 453, 481, 612, 756
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	6 cut(s)	10, 204, 453, 481, 612, 756
FspBI	CTAG	4 cut(s)	395, 402, 770, 893
GluI	GCNGC	6 cut(s)	10, 204, 453, 481, 612, 756
HaeIII	GGCC	2 cut(s)	625, 954
HapII	CCGG	1 cut(s)	585
Hin1II	CATG	7 cut(s)	55, 101, 247, 544, 581, 755, 883
HindIII	AAGCTT	1 cut(s)	926
HinfI	GANTC	3 cut(s)	301, 398, 427
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	1 cut(s)	930
Hpy166II	GTNNAC	2 cut(s)	149, 977
Hpy188I	TCNGA	4 cut(s)	92, 378, 426, 449
Hpy188III	TCNNGA	6 cut(s)	294, 382, 395, 402, 413, 763
Hpy8I	GTNNAC	2 cut(s)	149, 977
HpyAV	CCTTC	3 cut(s)	28, 698, 845
HpyCH4III	ACNGT	1 cut(s)	820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	486, 889
HpyF3I	CTNAG	4 cut(s)	153, 286, 354, 419
Hsp92II	CATG	7 cut(s)	55, 101, 247, 544, 581, 755, 883
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	5 cut(s)	124, 373, 378, 707, 875
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	2 cut(s)	450, 748
Lsp1109I	GCAGC	4 cut(s)	215, 464, 467, 767
LweI	GCATC	2 cut(s)	299, 763
MaeI	CTAG	4 cut(s)	395, 402, 770, 893
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	5 cut(s)	126, 375, 380, 709, 877
MboI	GATC	5 cut(s)	124, 373, 378, 707, 875
MboII	GAAGA	4 cut(s)	31, 512, 665, 729
MflI	RGATCY	2 cut(s)	707, 875
MhlI	GDGCHC	3 cut(s)	151, 412, 597
MluCI	AATT	5 cut(s)	318, 666, 823, 918, 934
MlyI	GAGTC	2 cut(s)	295, 392
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	2 cut(s)	210, 738
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	951
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	486, 889
NdeII	GATC	5 cut(s)	124, 373, 378, 707, 875
NlaIII	CATG	7 cut(s)	55, 101, 247, 544, 581, 755, 883
NlaIV	GGNNCC	4 cut(s)	709, 801, 877, 948
NmeAIII	GCCGAG	1 cut(s)	980
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	411
PceI	AGGCCT	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	427
PkrI	GCNGC	6 cut(s)	11, 205, 454, 482, 613, 757
PleI	GAGTC	2 cut(s)	295, 392
PpsI	GAGTC	2 cut(s)	295, 392
PpuMI	RGGWCCY	1 cut(s)	800
Psp5II	RGGWCCY	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	949
PspGI	CCWGG	1 cut(s)	949
PspN4I	GGNNCC	4 cut(s)	709, 801, 877, 948
PspPI	GGNCC	2 cut(s)	800, 947
PspPPI	RGGWCCY	1 cut(s)	800
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	707, 875
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	735
RsaNI	GTAC	1 cut(s)	734
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	2 cut(s)	210, 738
SatI	GCNGC	6 cut(s)	10, 204, 453, 481, 612, 756
Sau3AI	GATC	5 cut(s)	124, 373, 378, 707, 875
Sau96I	GGNCC	2 cut(s)	800, 947
SbfI	CCTGCAGG	1 cut(s)	559
SchI	GAGTC	2 cut(s)	295, 392
ScrFI	CCNGG	1 cut(s)	951
SdaI	CCTGCAGG	1 cut(s)	559
SduI	GDGCHC	3 cut(s)	151, 412, 597
SfaNI	GCATC	2 cut(s)	299, 763
SfcI	CTRYAG	1 cut(s)	555
Sfr274I	CTCGAG	1 cut(s)	411
SinI	GGWCC	2 cut(s)	800, 947
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	230, 411
SmoI	CTYRAG	2 cut(s)	230, 411
SphI	GCATGC	1 cut(s)	755
Sse8387I	CCTGCAGG	1 cut(s)	559
Sse9I	AATT	5 cut(s)	318, 666, 823, 918, 934
SseBI	AGGCCT	1 cut(s)	625
SsiI	CCGC	3 cut(s)	10, 611, 638
SspMI	CTAG	4 cut(s)	395, 402, 770, 893
StuI	AGGCCT	1 cut(s)	625
StyD4I	CCNGG	1 cut(s)	949
StyI	CCWWGG	2 cut(s)	66, 597
TaaI	ACNGT	1 cut(s)	820
TaqI	TCGA	1 cut(s)	412
TasI	AATT	5 cut(s)	318, 666, 823, 918, 934
TauI	GCSGC	2 cut(s)	12, 614
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	2 cut(s)	210, 738
Tru9I	TTAA	2 cut(s)	210, 738
TscAI	CASTG	2 cut(s)	373, 948
TseI	GCWGC	4 cut(s)	203, 452, 480, 755
TspDTI	ATGAA	4 cut(s)	32, 513, 560, 816
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	2 cut(s)	373, 948
VneI	GTGCAC	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	800, 947
XapI	RAATTY	2 cut(s)	823, 918
XbaI	TCTAGA	2 cut(s)	394, 401
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	976
XspI	CTAG	4 cut(s)	395, 402, 770, 893
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.