Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003459.1

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

13536 .. 16957

Gene Structure 3422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003459.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgacattgccgaaactgcattttccaaccgggtccgaatacaccaaactttaccgccttctagggctgtcactgccgcgaattgcctctagaggacaccacagggaggagcggacggcaacgacgaaccgatctggaaagtttcgtggccagagactgccggaaaagtcaggtcgagtcggggctcgagagctaagtcagaatcattgtgggtttgctccgagcagcaatgaaaatcaaagaatcatgagctgcttctgctgttgtgatgaagatgatatgcataaagcaactgacaatgggcgtgcttacatgatgaaaaatcctgcaggaaatgagggaagtcatcatgcctctggtaatgcgcccaagggtggtcaagtggtaaaggtccagcctattgaagttccgcttataccagtagaggagctaaaggaaattacagataactttgggacaaatgccttgattggggaaggttcgtatggaagagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

165

Amino Acids

18.15

Weight (kDa)

8.87

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	112
AccII	CGCG	1 cut(s)	79
AciI	CCGC	4 cut(s)	55, 77, 112, 410
AcoI	YGGCCR	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	106, 374, 471
AgsI	TTSAA	1 cut(s)	404
AluBI	AGCT	3 cut(s)	193, 252, 430
AluI	AGCT	3 cut(s)	193, 252, 430
Alw26I	GTCTC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	186
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	225, 252
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	33, 391
AsuC2I	CCSGG	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	33, 391
BalI	TGGCCA	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	237, 239
BceAI	ACGGC	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	62, 90
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	3 cut(s)	77, 226, 253
BlsI	GCNGC	3 cut(s)	78, 227, 254
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	33, 391
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	33, 391
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 374, 471
Bse1I	ACTGG	1 cut(s)	419
Bse3DI	GCAATG	2 cut(s)	5, 235
BseDI	CCNNGG	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	106, 374, 471
BseMI	GCAATG	2 cut(s)	5, 235
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	122, 440
BseXI	GCAGC	2 cut(s)	237, 239
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	30, 161
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	3 cut(s)	106, 374, 471
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	4 cut(s)	55, 77, 112, 410
BspANI	GGCC	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	5, 235
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	194
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 73, 258
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	2 cut(s)	237, 239
BsuRI	GGCC	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	1 cut(s)	157
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	33, 391
CviAII	CATG	3 cut(s)	247, 313, 350
CviJI	RGCY	7 cut(s)	67, 150, 185, 193, 252, 397, 430
CviKI_1	RGCY	7 cut(s)	67, 150, 185, 193, 252, 397, 430
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	33, 391
Eco88I	CYCGRG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	3 cut(s)	250, 316, 353
FaiI	YATR	8 cut(s)	248, 281, 285, 314, 351, 416, 486, 496
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	3 cut(s)	246, 312, 349
Fnu4HI	GCNGC	3 cut(s)	77, 226, 253
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	77, 226, 253
FspBI	CTAG	2 cut(s)	62, 90
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	3 cut(s)	77, 226, 253
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	30, 161
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	3 cut(s)	250, 316, 353
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	3 cut(s)	177, 202, 243
HpaII	CCGG	2 cut(s)	30, 161
Hpy188I	TCNGA	3 cut(s)	37, 201, 222
Hpy188III	TCNNGA	4 cut(s)	90, 135, 188, 247
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	68, 470
HpyCH4V	TGCA	3 cut(s)	19, 283, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 73, 258
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	250, 316, 353
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	3 cut(s)	109, 223, 427
Lsp1109I	GCAGC	2 cut(s)	237, 239
MaeI	CTAG	2 cut(s)	62, 90
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	133
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	1 cut(s)	131
MboII	GAAGA	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	2 cut(s)	81, 438
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	6 cut(s)	86, 97, 100, 331, 364, 418
Mox20I	TGGCCA	1 cut(s)	150
Mph1103I	ATGCAT	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	2 cut(s)	30, 161
MspR9I	CCNGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	16, 73, 258
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	250, 316, 353
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	186
PagI	TCATGA	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	202, 243
PkrI	GCNGC	3 cut(s)	78, 227, 254
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	33, 391
PstI	CTGCAG	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	157
SatI	GCNGC	3 cut(s)	77, 226, 253
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	2 cut(s)	33, 391
SbfI	CCTGCAGG	1 cut(s)	331
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	31
SdaI	CCTGCAGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	6 cut(s)	175, 195, 254, 393, 432, 481
SfcI	CTRYAG	1 cut(s)	327
Sfr274I	CTCGAG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	33, 391
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse8387I	CCTGCAGG	1 cut(s)	331
Sse9I	AATT	2 cut(s)	81, 438
SsiI	CCGC	4 cut(s)	55, 77, 112, 410
SspMI	CTAG	2 cut(s)	62, 90
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	369
TaqI	TCGA	2 cut(s)	175, 187
TasI	AATT	2 cut(s)	81, 438
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	202, 243
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	2 cut(s)	225, 252
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	3 cut(s)	246, 285, 332
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	33, 391
XbaI	TCTAGA	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	186
XspI	CTAG	2 cut(s)	62, 90
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.