Rroxscaffold_6G00394750
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
15568453 .. 15570454
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394750.1

Sequence Viewer

Length: 390 bp
ATGGACAATCTTATGGCAGGGGAAGTGAGCTGCTTCAGCTATTGTGATGAAGATGATATGCATAAAGCAACTGGCAATGGAGGTGCTTACATGATGAAAAATCCTGCAAGAAATGAGGGAAGTCATCATGCCTCCGGTAATGCGCCTAAGGGTGGTCAAGCGGTAAAGGTCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTAAAGGAAATTAGAGATAACTTTGGGACAAATGCCTTGATTGGGGAAGGTTCGTATGGAAGAGTATATTATGGGGTACTTAAAAGCAGGGAGCATACAGCAATCAAGAAGCTAGGTGCCAGCAAACAACCTGATGAGGTATCTTGCACAGCTAAAAGTACTGCCTGCGAGGTTGCCAGATGA

Protein Analysis

129

Amino Acids

13.83

Weight (kDa)

6.07

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AciI CCGC 2 cut(s) 161, 188
AcuI CTGAAG 1 cut(s) 19
AfaI GTAC 2 cut(s) 285, 367
AfiI CCNNNNNNNGG 2 cut(s) 152, 249
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 5 cut(s) 30, 39, 208, 319, 359
AluI AGCT 5 cut(s) 30, 39, 208, 319, 359
ApeKI GCWGC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 169
AvaII GGWCC 1 cut(s) 169
AxyI CCTNAGG 1 cut(s) 147
BanI GGYRCC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 17
BfaI CTAG 1 cut(s) 320
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 325
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 249
Bse1I ACTGG 2 cut(s) 76, 197
Bse21I CCTNAGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 152, 249
BseMI GCAATG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 76, 197
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 152, 249
BsmFI GGGAC 1 cut(s) 247
BspACI CCGC 2 cut(s) 161, 188
BspLI GGNNCC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 82
BsrI ACTGG 2 cut(s) 76, 197
Bst6I CTCTTC 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 328, 373
BstDEI CTNAG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 328, 373
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 284, 366
CviAII CATG 2 cut(s) 91, 128
CviJI RGCY 6 cut(s) 30, 39, 175, 208, 319, 359
CviKI_1 RGCY 6 cut(s) 30, 39, 175, 208, 319, 359
CviQI GTAC 2 cut(s) 284, 366
DdeI CTNAG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 19
Eco81I CCTNAGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 63
FaeI CATG 2 cut(s) 94, 131
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 90, 127
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 31
HapII CCGG 1 cut(s) 135
HhaI GCGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 94, 131
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HpaII CCGG 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 248
HpyCH4V TGCA 3 cut(s) 61, 107, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 94, 131
HspAI GCGC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 205, 298
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 320
MboII GAAGA 2 cut(s) 62, 279
MluCI AATT 1 cut(s) 216
MnlI CCTC 6 cut(s) 74, 109, 142, 196, 337, 370
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 1 cut(s) 288
MspI CCGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 36
NlaIII CATG 2 cut(s) 94, 131
NlaIV GGNNCC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 63
PkrI GCNGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 169
RsaI GTAC 2 cut(s) 285, 367
RsaNI GTAC 2 cut(s) 284, 366
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 367
SinI GGWCC 1 cut(s) 169
Sse9I AATT 1 cut(s) 216
SsiI CCGC 2 cut(s) 161, 188
SspMI CTAG 1 cut(s) 320
TasI AATT 1 cut(s) 216
TatI WGTACW 1 cut(s) 365
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 63, 110
VpaK11BI GGWCC 1 cut(s) 169
XspI CTAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.