Rh1DG088900
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
16579168 .. 16588016
8849 bp
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UTR
Exon/CDS
Intron
Rh1DG088900.1

Sequence Viewer

Length: 309 bp
ATGCATAAAGCAACTGACAATGGAGGTGCTTACATGATGAAAAATCCTGCAAGAAATGAGGCAAGTCATCATGCCTCCAGTAATGCGCCCAAGGGTGGTCAAGCGGTAGAGGTCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTAAAGGAAATTACAGATAACTTTGGGACAAATGCCTTGATTGGGGAAGGTTGGTATGGAAGAGCATATTATGGGGTATTTAAAAGCAGGGAGCATGCAACAATCAAGAAGCTAGATGCCAGTAAACAACCTGATGAGGTATCTTGCACAGGTATATAG

Protein Analysis

102

Amino Acids

11.07

Weight (kDa)

6.05

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 104, 131
AfiI CCNNNNNNNGG 2 cut(s) 95, 192
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 2 cut(s) 151, 262
AluI AGCT 2 cut(s) 151, 262
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 112
BfaI CTAG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmsI GCATC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 192
Bse1I ACTGG 3 cut(s) 78, 140, 270
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 95, 192
BseNI ACTGG 3 cut(s) 78, 140, 270
BseRI GAGGAG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 95, 192
BsmFI GGGAC 1 cut(s) 190
BspACI CCGC 2 cut(s) 104, 131
BspQI GCTCTTC 1 cut(s) 205
BsrI ACTGG 3 cut(s) 78, 140, 270
BssECI CCNNGG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 246
BstHHI GCGC 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 3 cut(s) 34, 71, 245
CviJI RGCY 3 cut(s) 118, 151, 262
CviKI_1 RGCY 3 cut(s) 118, 151, 262
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 37, 74, 248
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 33, 70, 244
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 61
HhaI GCGC 1 cut(s) 88
Hin1II CATG 3 cut(s) 37, 74, 248
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 275
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 191
HpyCH4V TGCA 4 cut(s) 4, 50, 248, 297
Hsp92II CATG 3 cut(s) 37, 74, 248
HspAI GCGC 1 cut(s) 86
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 148, 241
LpnPI CCDG 8 cut(s) 60, 91, 128, 153, 223, 283, 285, 294
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 263
MboII GAAGA 1 cut(s) 222
MluCI AATT 1 cut(s) 159
MnlI CCTC 6 cut(s) 17, 52, 85, 103, 139, 280
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 231
NlaIII CATG 3 cut(s) 37, 74, 248
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 112
SetI ASST 8 cut(s) 28, 114, 153, 202, 264, 283, 291, 304
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 112
SphI GCATGC 1 cut(s) 248
Sse9I AATT 1 cut(s) 159
SsiI CCGC 2 cut(s) 104, 131
SspMI CTAG 1 cut(s) 263
StyI CCWWGG 1 cut(s) 90
TasI AATT 1 cut(s) 159
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.