Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0020869

Physical Location & Seq

Genomic Coordinates Reverse (-)

24624055 .. 24626401

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCGTGCTGCGGCGGTGCGGAGGAGGAAAACTACGGCCCACCTGCCAACCAATATAACACTGCCCCACCCAGAGGGGGTGGTGGGAGTACATATGGAGGCGGAGGCAATGACAGAGGAGAGCCAAGGAGTTCCAATCCGGTAAAAAGTGGGGCTCCGGCAAAGGCCTTACCCATTGAAATACCGGCTATTCCCTTGGATGAGTTAAATAGGCTAACGAGTAACTTCGGCCAAAAGGCTTTGATAGGAGAAGGCTCTTATGGCCGGGTTTTCTATGCAAAATTAAGTAATGGTAAGCCTGCTGCAATTAAAAAGTTGGATGCAGGTTCACAAGAGCCAGACTCAGATTTTGGATCTCAAGCAACTCCAAGATTGAGTGAGGACAAAGTGAAGCAGTGTGTTGATCCCAAGCTAAACAACGACTACCCACCAAAGGCGATTGCTAAGTTGGCAGCAGTGGCAGCACTATGTGTTCAGTATGAAGCTGACTTCAGGCCAAACATGACAATTGTTGTAAAGGCTCTACAGCCACTGCTCAATTCAAAACCTGCAGGACCAGATGCAAACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

190

Amino Acids

19.79

Weight (kDa)

7.57

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060
rosa_samantha	Rh3AG224700 Rh3CG252900 Rh4BG142300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	3 cut(s)	52, 314, 556
AciI	CCGC	4 cut(s)	12, 15, 20, 102
AclWI	GGATC	2 cut(s)	361, 398
AcoI	YGGCCR	2 cut(s)	229, 262
AcuI	CTGAAG	1 cut(s)	475
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	74, 77, 433
AgsI	TTSAA	2 cut(s)	179, 543
AluBI	AGCT	2 cut(s)	412, 485
AluI	AGCT	2 cut(s)	412, 485
AlwI	GGATC	2 cut(s)	361, 398
AlwNI	CAGNNNCTG	1 cut(s)	532
AoxI	GGCC	5 cut(s)	37, 165, 229, 262, 494
ApeKI	GCWGC	4 cut(s)	9, 302, 452, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AspS9I	GGNCC	2 cut(s)	38, 554
AsuC2I	CCSGG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	157
BbvI	GCAGC	3 cut(s)	289, 464, 473
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	266
BfmI	CTRYAG	2 cut(s)	524, 549
BfuAI	ACCTGC	3 cut(s)	52, 314, 556
BisI	GCNGC	5 cut(s)	10, 13, 303, 453, 462
BlsI	GCNGC	5 cut(s)	11, 14, 304, 454, 463
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	38, 554
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	310, 550
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpuEI	CTTGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	125, 195
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 77, 433
Bse118I	RCCGGY	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	125, 195
BseGI	GGATG	2 cut(s)	205, 325
BseLI	CCNNNNNNNGG	3 cut(s)	74, 77, 433
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	2 cut(s)	38, 132
BseXI	GCAGC	3 cut(s)	289, 464, 473
BshFI	GGCC	5 cut(s)	39, 167, 231, 264, 496
BsiSI	CCGG	4 cut(s)	140, 158, 185, 265
BslI	CCNNNNNNNGG	3 cut(s)	74, 77, 433
BsnI	GGCC	5 cut(s)	39, 167, 231, 264, 496
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	353, 403
BspACI	CCGC	4 cut(s)	12, 15, 20, 102
BspANI	GGCC	5 cut(s)	39, 167, 231, 264, 496
BspCNI	CTCAG	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	3 cut(s)	52, 314, 556
BspPI	GGATC	2 cut(s)	361, 398
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	125, 195
BssMI	GATC	2 cut(s)	353, 403
BssT1I	CCWWGG	2 cut(s)	125, 195
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	343, 444
BstF5I	GGATG	2 cut(s)	205, 325
BstKTI	GATC	2 cut(s)	356, 406
BstMBI	GATC	2 cut(s)	353, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 449, 458, 461
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	2 cut(s)	524, 549
BstV1I	GCAGC	3 cut(s)	289, 464, 473
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	5 cut(s)	39, 167, 231, 264, 496
BtsCI	GGATG	2 cut(s)	205, 325
BtsI	GCAGTG	4 cut(s)	60, 401, 462, 530
BtsIMutI	CAGTG	4 cut(s)	60, 401, 462, 530
BveI	ACCTGC	3 cut(s)	52, 314, 556
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	38, 554
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	1 cut(s)	502
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	343, 444
DpnI	GATC	2 cut(s)	355, 405
DpnII	GATC	2 cut(s)	353, 403
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	2 cut(s)	229, 262
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	125, 195
Eco147I	AGGCCT	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	125, 195
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	125, 195
FaeI	CATG	1 cut(s)	505
FaiI	YATR	9 cut(s)	57, 94, 96, 261, 276, 469, 480, 503, 571
FatI	CATG	1 cut(s)	501
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	10, 13, 303, 453, 462
FokI	GGATG	2 cut(s)	212, 332
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	5 cut(s)	10, 13, 303, 453, 462
GluI	GCNGC	5 cut(s)	10, 13, 303, 453, 462
HaeIII	GGCC	5 cut(s)	39, 167, 231, 264, 496
HapII	CCGG	4 cut(s)	140, 158, 185, 265
Hin1II	CATG	1 cut(s)	505
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	4 cut(s)	140, 158, 185, 265
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	346
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	245
HpyCH4V	TGCA	5 cut(s)	278, 305, 323, 551, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 449, 458, 461
HpyF3I	CTNAG	2 cut(s)	343, 444
Hsp92II	CATG	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	353, 403
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	3 cut(s)	289, 464, 473
LweI	GCATC	2 cut(s)	310, 550
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	355, 405
MboI	GATC	2 cut(s)	353, 403
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	4 cut(s)	281, 306, 507, 538
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	7 cut(s)	16, 19, 68, 92, 98, 110, 373
MseI	TTAA	3 cut(s)	206, 284, 309
MspI	CCGG	4 cut(s)	140, 158, 185, 265
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	261, 449, 458, 461
NciI	CCSGG	1 cut(s)	266
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	2 cut(s)	353, 403
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	1 cut(s)	156
PaqCI	CACCTGC	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	11, 14, 304, 454, 463
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	38, 554
PstI	CTGCAG	1 cut(s)	553
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	206, 284, 309
SatI	GCNGC	5 cut(s)	10, 13, 303, 453, 462
Sau3AI	GATC	2 cut(s)	353, 403
Sau96I	GGNCC	2 cut(s)	38, 554
SbfI	CCTGCAGG	1 cut(s)	553
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	266
SdaI	CCTGCAGG	1 cut(s)	553
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	5 cut(s)	46, 328, 414, 487, 550
SfaNI	GCATC	2 cut(s)	310, 550
SfcI	CTRYAG	2 cut(s)	524, 549
SinI	GGWCC	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse8387I	CCTGCAGG	1 cut(s)	553
Sse9I	AATT	4 cut(s)	281, 306, 507, 538
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	4 cut(s)	12, 15, 20, 102
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	125, 195
TasI	AATT	4 cut(s)	281, 306, 507, 538
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	15
Tru1I	TTAA	3 cut(s)	206, 284, 309
Tru9I	TTAA	3 cut(s)	206, 284, 309
TscAI	CASTG	4 cut(s)	67, 401, 462, 537
TseI	GCWGC	4 cut(s)	9, 302, 452, 461
TspDTI	ATGAA	1 cut(s)	495
TspRI	CASTG	4 cut(s)	67, 401, 462, 537
VpaK11BI	GGWCC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.