Rh3AG267900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0021176
Physical Location & Seq
Forward (+)
30501045 .. 30502061
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG267900.1

Sequence Viewer

Length: 552 bp
ATGTCTATTCCCAAGGAGCCGGACCAGGTAATGAAGCAGAGGGGAGGCTCTGTTCTCGGAAAGAAGACCATTCTCAAGAGTGACCACTTCCCTGGCTGCCAGAACAAACGCCTCTCCCCCCACATTGACGGCGCTCCCAATTACCGTCAGCCTCGAGCACATATGAGATTTTGGAGATTGCTTCCTTTAAAATCTTTCAAGAAATGCTTTTTCTCAATAGAAATGGGTGGCATGGGAAAATTAGAGGCGGTGCGACGCTCTATCTGCACTGATTCCGAGTGGAGGAGGAGGGAGCTAATTGATTACATTCAGAGGATAATCAAAGGCCGTTTCGGAACTGAGGTCTTGTCCTTTGGCTCAGTCCCTTTAAAAACCTATCTTCCTGATGGAGATATTGATTTGACAGTACTCTGCCATCGGAACAAGGAGGAAGAGTTAGCTAGAGCCGTCTGCAGTCTCCTAGAAGGTGAACCAAAGGAACCTGGGTTCCTGGTTAAAGATGTTAGATACGTTTATGCCAAGGTAGATTTTCTGGGTGATGCTCTAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2 PAP_assoc

Protein Analysis

183

Amino Acids

20.97

Weight (kDa)

9.42

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021176)

Species Orthologous Gene IDs
malus_domestica MD01G1165100.v1.1
pyrus_communis pycom07g21020
rosa_chinensis RchiOBHm_Chr3g0485471
rosa_samantha Rh3AG267900 Rh3BG303400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 248
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 4 cut(s) 24, 91, 481, 489
AloI GAACNNNNNNTCC 6 cut(s) 36, 68, 470, 471, 502, 503
AluBI AGCT 2 cut(s) 295, 440
AluI AGCT 2 cut(s) 295, 440
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 461
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 479, 548
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 380, 423
BceAI ACGGC 3 cut(s) 145, 312, 431
BciT130I CCWGG 4 cut(s) 26, 93, 483, 491
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 2 cut(s) 441, 461
BfmI CTRYAG 1 cut(s) 451
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 4 cut(s) 26, 93, 483, 491
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 3 cut(s) 18, 480, 488
BmrFI CCNGG 4 cut(s) 26, 93, 483, 491
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 12, 91, 482, 519
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 419, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 282
BseBI CCWGG 4 cut(s) 26, 93, 483, 491
BseDI CCNNGG 4 cut(s) 12, 91, 482, 519
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 330, 372
BseRI GAGGAG 2 cut(s) 298, 301
BseXI GCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 160
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 331, 371
BspLI GGNNCC 3 cut(s) 18, 480, 488
BspMAI CTGCAG 1 cut(s) 455
BssECI CCNNGG 4 cut(s) 12, 91, 482, 519
BssT1I CCWWGG 2 cut(s) 12, 519
Bst2UI CCWGG 4 cut(s) 26, 93, 483, 491
Bst4CI ACNGT 2 cut(s) 146, 406
Bst6I CTCTTC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 339, 358
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 461
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 4 cut(s) 26, 93, 483, 491
BstSCI CCNGG 4 cut(s) 24, 91, 481, 489
BstSFI CTRYAG 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 267
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 22
CseI GACGC 1 cut(s) 264
CsiI ACCWGGT 1 cut(s) 24
Csp6I GTAC 1 cut(s) 407
CviAII CATG 1 cut(s) 232
CviJI RGCY 9 cut(s) 19, 48, 96, 151, 295, 327, 357, 440, 446
CviKI_1 RGCY 9 cut(s) 19, 48, 96, 151, 295, 327, 357, 440, 446
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 339, 358
DraI TTTAAA 2 cut(s) 189, 369
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 12, 519
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 153
EcoRII CCWGG 4 cut(s) 24, 91, 481, 489
EcoT14I CCWWGG 2 cut(s) 12, 519
ErhI CCWWGG 2 cut(s) 12, 519
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 162, 164, 233, 516
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 1 cut(s) 347
FatI CATG 1 cut(s) 231
FauNDI CATATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 2 cut(s) 441, 461
GlaI GCGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 134
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 1 cut(s) 272
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 479, 548
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 5 cut(s) 59, 277, 312, 335, 420
Hpy188III TCNNGA 3 cut(s) 76, 199, 383
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 146, 406
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 2 cut(s) 267, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 339, 358
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 1 cut(s) 132
LmnI GCTCC 3 cut(s) 16, 139, 292
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 529
MabI ACCWGGT 1 cut(s) 24
MaeI CTAG 2 cut(s) 441, 461
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 3 cut(s) 76, 371, 443
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 3 cut(s) 139, 239, 297
MseI TTAA 3 cut(s) 188, 368, 495
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 4 cut(s) 26, 93, 483, 491
MvaI CCWGG 4 cut(s) 26, 93, 483, 491
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeI CATATG 1 cut(s) 162
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 3 cut(s) 18, 480, 488
NmuCI GTSAC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 153
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 98
Psp6I CCWGG 4 cut(s) 24, 91, 481, 489
PspGI CCWGG 4 cut(s) 24, 91, 481, 489
PspN4I GGNNCC 3 cut(s) 18, 480, 488
PspPI GGNCC 1 cut(s) 22
PspXI VCTCGAGB 1 cut(s) 153
PstI CTGCAG 1 cut(s) 455
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SaqAI TTAA 3 cut(s) 188, 368, 495
SatI GCNGC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 22
ScaI AGTACT 1 cut(s) 408
ScrFI CCNGG 4 cut(s) 26, 93, 483, 491
SduI GDGCHC 1 cut(s) 160
SetI ASST 9 cut(s) 30, 297, 345, 377, 442, 469, 484, 513, 525
SexAI ACCWGGT 1 cut(s) 24
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 1 cut(s) 451
Sfr274I CTCGAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 74, 153
SmoI CTYRAG 2 cut(s) 74, 153
Sse9I AATT 3 cut(s) 139, 239, 297
SsiI CCGC 1 cut(s) 248
SspMI CTAG 2 cut(s) 441, 461
StyD4I CCNGG 4 cut(s) 24, 91, 481, 489
StyI CCWWGG 2 cut(s) 12, 519
TaaI ACNGT 2 cut(s) 146, 406
TaiI ACGT 1 cut(s) 513
TaqI TCGA 1 cut(s) 154
TasI AATT 3 cut(s) 139, 239, 297
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 3 cut(s) 188, 368, 495
Tru9I TTAA 3 cut(s) 188, 368, 495
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 153
XspI CTAG 2 cut(s) 441, 461
ZrmI AGTACT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.