Rh3BG220500

1-aminocyclopropane-1-carboxylate oxidase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0021380
Physical Location & Seq
Forward (+)
19891192 .. 19892246
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG220500.1

Sequence Viewer

Length: 375 bp
ATGTGCAGGAATGAGGTGGTTGCGTGGGATTTTCATGCAACCAAGGTGGGTGAAACTGTGATGGAGTTGCTTTCAGAAGGGTTAGGGTTGGAAGCCGGGAAGTTCAAGGAGCTTACGTTTTCGGATGCGAGGAACCATGTACCTGGGTTGGAAGTTAGGCATCAAAATGAGTGGGTGGATGTCAAGCCTGTGCTTGGAGGTTTGGTTATCAACATTGGAGATCTTCTTCAGATAATCTCTAATGGGGAGTATAAAAGTGTGCAACATCGTGTGTTGGCAAACTCCTGGAAGGAAGCTCGAATTTCAATTGTGATATTTTACAACCTAGCCAAATGGAGGGAAGATGGATATTGTGGACCTCTCCCAGAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

124

Amino Acids

14.0

Weight (kDa)

5.53

Isoelectric Point (pI)

21.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 44 - 108 1.3e-16 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021380)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0474391
rosa_samantha Rh3AG191300 Rh3BG220500 Rh3CG215800 Rh3DG216200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 194, 336
AgsI TTSAA 2 cut(s) 106, 306
AjnI CCWGG 2 cut(s) 142, 284
AluBI AGCT 2 cut(s) 112, 296
AluI AGCT 2 cut(s) 112, 296
ApoI RAATTY 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 356
BccI CCATC 2 cut(s) 55, 338
BciT130I CCWGG 2 cut(s) 144, 286
BcnI CCSGG 1 cut(s) 97
BfaI CTAG 1 cut(s) 326
BglII AGATCT 1 cut(s) 220
Bme1390I CCNGG 3 cut(s) 97, 144, 286
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 3 cut(s) 97, 144, 286
BmsI GCATC 2 cut(s) 115, 169
BpuMI CCSGG 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 42, 143
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 189, 219
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 336
BseBI CCWGG 2 cut(s) 144, 286
BseDI CCNNGG 2 cut(s) 42, 143
BseGI GGATG 2 cut(s) 130, 184
BseLI CCNNNNNNNGG 2 cut(s) 194, 336
BsgI GTGCAG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 194, 336
Bsp143I GATC 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 42, 143
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 2 cut(s) 144, 286
Bst4CI ACNGT 1 cut(s) 58
BstF5I GGATG 2 cut(s) 130, 184
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstNI CCWGG 2 cut(s) 144, 286
BstSCI CCNGG 3 cut(s) 95, 142, 284
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 1 cut(s) 220
BtsCI GGATG 2 cut(s) 130, 184
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 140
CspCI CAANNNNNGTGG 4 cut(s) 27, 62, 152, 187
CviAII CATG 2 cut(s) 35, 137
CviJI RGCY 5 cut(s) 95, 112, 187, 296, 329
CviKI_1 RGCY 5 cut(s) 95, 112, 187, 296, 329
CviQI GTAC 1 cut(s) 140
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 142, 284
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 38, 140
FaiI YATR 3 cut(s) 36, 138, 252
FatI CATG 2 cut(s) 34, 136
FokI GGATG 2 cut(s) 137, 191
FspBI CTAG 1 cut(s) 326
HapII CCGG 1 cut(s) 96
Hin1II CATG 2 cut(s) 38, 140
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 3 cut(s) 76, 124, 231
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 2 cut(s) 71, 283
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 6, 38, 262
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 38, 140
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 109, 129, 156, 201, 271, 298
LweI GCATC 2 cut(s) 115, 169
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 116
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 215, 218, 353
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 220
MluCI AATT 2 cut(s) 300, 306
MmeI TCCRAC 2 cut(s) 69, 129
MnlI CCTC 5 cut(s) 7, 123, 191, 330, 369
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 3 cut(s) 97, 144, 286
MunI CAATTG 1 cut(s) 306
MvaI CCWGG 2 cut(s) 144, 286
NciI CCSGG 1 cut(s) 97
NdeII GATC 1 cut(s) 220
NlaIII CATG 2 cut(s) 38, 140
NlaIV GGNNCC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 142, 284
PspGI CCWGG 2 cut(s) 142, 284
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 356
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 165
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 356
ScrFI CCNGG 3 cut(s) 97, 144, 286
SetI ASST 9 cut(s) 18, 48, 114, 119, 145, 202, 298, 327, 361
SfaNI GCATC 2 cut(s) 115, 169
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 2 cut(s) 300, 306
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 3 cut(s) 95, 142, 284
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 298
TasI AATT 2 cut(s) 300, 306
TspDTI ATGAA 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 356
XapI RAATTY 1 cut(s) 300
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.