Rh3DG216200

1-aminocyclopropane-1-carboxylate oxidase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0021380
Physical Location & Seq
Forward (+)
19914185 .. 19915347
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG216200.1

Sequence Viewer

Length: 483 bp
ATGTATGCCAGCAATAACGACTTGTACGGTACAAAGGCGGCGAGCTGGCATGACTCGTTGCAGGTCTGGATGGGCCCACAACGTTCCGAGGCAGAGGAGATCCTAGAGATGTGCAGGAATGAGGTGGTTGCGTGGGATTTTCATGCAACCAAGGTGGGTGAAACTGTGATGGAGTTGCTTTCAGAAGGGTTAGGGTTGGAAGCCGGGAAGTTCAAGGAGCTTACGTTTTCGGATGCGAGGAACCATGTACCTGGGTTGGAAGTTAGGCATCAAAATGAGTGGGTGGATGTCAAGCCTGTGCTTGGAGGTTTGGTTATCAACATTGGAGATCTTCTTCAGATAATCTCTAATGGGGAGTATAAAAGTGTGCAACATCGTGTGTTGGCAAACTCCTGGAAGGAAGCTCGAATTTCAATTGTGATATTTTACAACCTAGCCAAATGGAGGGAAGATGGATATTGTGGACCTCTCCCAGAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

160

Amino Acids

18.12

Weight (kDa)

5.09

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 81 - 144 2.6e-16 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021380)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0474391
rosa_samantha Rh3AG191300 Rh3BG220500 Rh3CG215800 Rh3DG216200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 1 cut(s) 38
AclI AACGTT 1 cut(s) 82
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 3 cut(s) 26, 31, 249
AfiI CCNNNNNNNGG 2 cut(s) 302, 444
AgsI TTSAA 2 cut(s) 214, 414
AjnI CCWGG 2 cut(s) 250, 392
AluBI AGCT 3 cut(s) 45, 220, 404
AluI AGCT 3 cut(s) 45, 220, 404
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 73
ApaI GGGCCC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 408
AspS9I GGNCC 3 cut(s) 73, 74, 464
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 77
BccI CCATC 3 cut(s) 64, 163, 446
BciT130I CCWGG 2 cut(s) 252, 394
BcnI CCSGG 1 cut(s) 205
BfaI CTAG 2 cut(s) 104, 434
BfuAI ACCTGC 1 cut(s) 52
BglII AGATCT 1 cut(s) 328
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 3 cut(s) 205, 252, 394
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 73, 74, 464
BmiI GGNNCC 2 cut(s) 75, 242
BmrFI CCNGG 3 cut(s) 205, 252, 394
BmsI GCATC 2 cut(s) 223, 277
BpuMI CCSGG 1 cut(s) 205
BsaJI CCNNGG 3 cut(s) 87, 150, 251
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 297, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 444
BseBI CCWGG 2 cut(s) 252, 394
BseDI CCNNGG 3 cut(s) 87, 150, 251
BseGI GGATG 3 cut(s) 75, 238, 292
BseLI CCNNNNNNNGG 2 cut(s) 302, 444
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 302, 444
BsnI GGCC 1 cut(s) 75
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 99, 328
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 75, 242
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 87, 150, 251
BssMI GATC 2 cut(s) 99, 328
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 252, 394
Bst4CI ACNGT 2 cut(s) 29, 166
BstC8I GCNNGC 3 cut(s) 10, 43, 47
BstF5I GGATG 3 cut(s) 75, 238, 292
BstKTI GATC 2 cut(s) 102, 331
BstMBI GATC 2 cut(s) 99, 328
BstNI CCWGG 2 cut(s) 252, 394
BstSCI CCNGG 3 cut(s) 203, 250, 392
BstSLI GKGCMC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 99, 328
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 2 cut(s) 99, 328
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 3 cut(s) 75, 238, 292
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 10, 43, 47
Cfr13I GGNCC 3 cut(s) 73, 74, 464
Csp6I GTAC 3 cut(s) 25, 30, 248
CspCI CAANNNNNGTGG 4 cut(s) 135, 170, 260, 295
CviAII CATG 3 cut(s) 50, 143, 245
CviJI RGCY 7 cut(s) 45, 75, 203, 220, 295, 404, 437
CviKI_1 RGCY 7 cut(s) 45, 75, 203, 220, 295, 404, 437
CviQI GTAC 3 cut(s) 25, 30, 248
DpnI GATC 2 cut(s) 101, 330
DpnII GATC 2 cut(s) 99, 328
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 250, 392
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 53, 146, 248
FaiI YATR 5 cut(s) 6, 51, 144, 246, 360
FatI CATG 3 cut(s) 49, 142, 244
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 82, 245, 299
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 104, 434
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 204
Hin1II CATG 3 cut(s) 53, 146, 248
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 4 cut(s) 88, 184, 232, 339
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 464
HpyAV CCTTC 2 cut(s) 179, 391
HpyCH4III ACNGT 2 cut(s) 29, 166
HpyCH4IV ACGT 2 cut(s) 82, 224
HpyCH4V TGCA 4 cut(s) 61, 114, 146, 370
HpySE526I ACGT 2 cut(s) 82, 224
Hsp92II CATG 3 cut(s) 53, 146, 248
Kzo9I GATC 2 cut(s) 99, 328
LmnI GCTCC 1 cut(s) 217
LweI GCATC 2 cut(s) 223, 277
MaeI CTAG 2 cut(s) 104, 434
MaeII ACGT 2 cut(s) 82, 224
MalI GATC 2 cut(s) 101, 330
MboI GATC 2 cut(s) 99, 328
MboII GAAGA 3 cut(s) 323, 326, 461
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 2 cut(s) 99, 328
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 408, 414
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 177, 237
MnlI CCTC 7 cut(s) 82, 88, 115, 231, 299, 438, 477
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 3 cut(s) 205, 252, 394
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 2 cut(s) 252, 394
NciI CCSGG 1 cut(s) 205
NdeII GATC 2 cut(s) 99, 328
NlaIII CATG 3 cut(s) 53, 146, 248
NlaIV GGNNCC 2 cut(s) 75, 242
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp1406I AACGTT 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 250, 392
PspGI CCWGG 2 cut(s) 250, 392
PspN4I GGNNCC 2 cut(s) 75, 242
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 3 cut(s) 73, 74, 464
PsuI RGATCY 2 cut(s) 99, 328
RsaI GTAC 3 cut(s) 26, 31, 249
RsaNI GTAC 3 cut(s) 25, 30, 248
RseI CAYNNNNRTG 1 cut(s) 273
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 99, 328
Sau96I GGNCC 3 cut(s) 73, 74, 464
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 3 cut(s) 205, 252, 394
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 2 cut(s) 223, 277
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 2 cut(s) 408, 414
SsiI CCGC 1 cut(s) 38
SspMI CTAG 2 cut(s) 104, 434
StyD4I CCNGG 3 cut(s) 203, 250, 392
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 29, 166
TaiI ACGT 2 cut(s) 85, 227
TaqI TCGA 1 cut(s) 406
TasI AATT 2 cut(s) 408, 414
TauI GCSGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 1 cut(s) 408
XspI CTAG 2 cut(s) 104, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.