Rh3CG357000

Calcium-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0021756
Physical Location & Seq
Forward (+)
43804089 .. 43808162
4074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG357000.1

Sequence Viewer

Length: 252 bp
ATGAATCCCGACCCGAACGCACCCTCGGCCGGGTCCTCCAAGGCCGGCCTGAACCGAATCTGGCGCTCATTAGGCCACCCCTGGGTGCAAGTTGATGGTGTGGCTCCTGATAAGGCTCTTGATTCTGCAGTTCTAAGTCGCTTAAAGCAATTTTCAGCTATGAACAAGTTGAAGAAAATGGCTCTTAGGGACTCTTATGAGTATCTATTTAAAGAGCTGAGCAAGTACAGATGGATCATTCTCAGGCTATAA

Protein Analysis

83

Amino Acids

9.45

Weight (kDa)

10.07

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021756)

Species Orthologous Gene IDs
rosa_rugosa Rorug03G0226300
rosa_samantha Rh3CG134800 Rh3CG357000 Rh3DG133900 Rh5DG463900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 29, 30, 82
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 2 cut(s) 158, 217
AluI AGCT 2 cut(s) 158, 217
AlwI GGATC 1 cut(s) 242
AoxI GGCC 4 cut(s) 27, 42, 46, 73
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 31
AvaII GGWCC 1 cut(s) 33
BccI CCATC 2 cut(s) 89, 225
BciT130I CCWGG 1 cut(s) 82
BcnI CCSGG 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 67
BlpI GCTNAGC 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 31, 82
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 34, 105
BmrFI CCNGG 2 cut(s) 31, 82
Bpu1102I GCTNAGC 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 31
BsaJI CCNNGG 4 cut(s) 24, 39, 80, 81
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 30, 82
Bse118I RCCGGY 1 cut(s) 44
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 4 cut(s) 24, 39, 80, 81
BseLI CCNNNNNNNGG 3 cut(s) 29, 30, 82
BseMII CTCAG 1 cut(s) 209
BseX3I CGGCCG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 4 cut(s) 29, 44, 48, 75
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 2 cut(s) 30, 45
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 29, 30, 82
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 4 cut(s) 29, 44, 48, 75
Bsp143I GATC 1 cut(s) 234
Bsp1720I GCTNAGC 1 cut(s) 218
BspANI GGCC 4 cut(s) 29, 44, 48, 75
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 34, 105
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 4 cut(s) 24, 39, 80, 81
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 4 cut(s) 134, 185, 218, 242
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 26, 72
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 29, 80
BstSFI CTRYAG 1 cut(s) 126
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 4 cut(s) 29, 44, 48, 75
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 226
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 4 cut(s) 134, 185, 218, 242
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraI TTTAAA 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 33
Eco52I CGGCCG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaiI YATR 3 cut(s) 161, 198, 250
FaqI GGGAC 1 cut(s) 203
FseI GGCCGGCC 1 cut(s) 48
GlaI GCGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 4 cut(s) 29, 44, 48, 75
HapII CCGG 2 cut(s) 30, 45
HhaI GCGC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 4 cut(s) 4, 57, 122, 191
HpaII CCGG 2 cut(s) 30, 45
Hpy188III TCNNGA 3 cut(s) 8, 107, 119
HpyCH4V TGCA 2 cut(s) 88, 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 72
HpyF3I CTNAG 4 cut(s) 134, 185, 218, 242
HspAI GCGC 1 cut(s) 64
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 43, 46, 58, 62, 67, 94, 120, 229
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 184
MluCI AATT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 2 cut(s) 34, 46
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 2 cut(s) 143, 210
MspI CCGG 2 cut(s) 30, 45
MspR9I CCNGG 2 cut(s) 31, 82
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 26, 72
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 31
NdeII GATC 1 cut(s) 234
NgoMIV GCCGGC 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 34, 105
NmeAIII GCCGAG 1 cut(s) 5
PasI CCCWGGG 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 3 cut(s) 4, 57, 122
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 34, 105
PspPI GGNCC 1 cut(s) 33
PspPPI RGGWCCY 1 cut(s) 33
PstI CTGCAG 1 cut(s) 130
RigI GGCCGGCC 1 cut(s) 48
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 143, 210
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 31, 82
SetI ASST 2 cut(s) 160, 219
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 33
Sse9I AATT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 29, 80
StyI CCWWGG 1 cut(s) 39
TasI AATT 1 cut(s) 149
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 3 cut(s) 4, 57, 122
Tru1I TTAA 2 cut(s) 143, 210
Tru9I TTAA 2 cut(s) 143, 210
TspDTI ATGAA 2 cut(s) 17, 176
VpaK11BI GGWCC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.