Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0021756

Physical Location & Seq

Genomic Coordinates Forward (+)

11373072 .. 11373940

Gene Structure 869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG133900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATTCCACAAGAAACGGAGCAAGGAATATTTGATCAGGTCTTGCATGGTGAGCTAGACTTTTCATCAGATCCCTGGCCTAGTATCTCTGACAGTGCCAAAGATTTAGTAAGGAGAATGCTTGTCCGAGACCCTAGAAAGCGGCTGACTGCACACGAAGTTTTGTGCCACCCCTGGGTGCAAGTTGATGGTGTGGCTCCTGATAAGGCTCTTGATTCTGCAGTTCTAAGTCGCTTAAAGCAATTTTCAGCTATGAACAAGCTGAAGAAAATGGCTCTTAGGAGGATTCGGCAGGTTTTTGCTGACTTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005509 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0031090 GO:0031903 GO:0031984 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042175 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098588 GO:0098805 GO:0098827 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

104

Amino Acids

11.9

Weight (kDa)

8.71

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 60	2.6e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021756)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug03G0226300
rosa_samantha	Rh3CG134800 Rh3CG357000 Rh3DG133900 Rh5DG463900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	74, 173
AluBI	AGCT	3 cut(s)	55, 251, 262
AluI	AGCT	3 cut(s)	55, 251, 262
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	62
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	76, 175
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	4 cut(s)	56, 81, 135, 313
BfmI	CTRYAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	76, 175
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	76, 175
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	74, 173, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	76, 175
BseDI	CCNNGG	3 cut(s)	74, 173, 174
BseLI	CCNNNNNNNGG	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	34, 70
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	123
BssECI	CCNNGG	3 cut(s)	74, 173, 174
BssMI	GATC	2 cut(s)	34, 70
Bst2UI	CCWGG	2 cut(s)	76, 175
Bst4CI	ACNGT	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	227, 278
BstKTI	GATC	2 cut(s)	37, 73
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	34, 70
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	76, 175
BstSCI	CCNGG	2 cut(s)	74, 173
BstSFI	CTRYAG	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	283
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	8 cut(s)	55, 79, 145, 197, 209, 251, 262, 275
CviKI_1	RGCY	8 cut(s)	55, 79, 145, 197, 209, 251, 262, 275
DdeI	CTNAG	2 cut(s)	227, 278
DpnI	GATC	2 cut(s)	36, 72
DpnII	GATC	2 cut(s)	34, 70
Eco31I	GGTCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	74, 173
FaeI	CATG	1 cut(s)	50
FaiI	YATR	2 cut(s)	48, 254
FatI	CATG	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	4 cut(s)	56, 81, 135, 313
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	3 cut(s)	4, 215, 286
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	3 cut(s)	70, 91, 128
Hpy188III	TCNNGA	2 cut(s)	200, 212
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	46, 152, 181, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	227, 278
Hsp92II	CATG	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	34, 70
LmnI	GCTCC	2 cut(s)	19, 202
LpnPI	CCDG	7 cut(s)	23, 61, 88, 160, 187, 213, 278
MaeI	CTAG	4 cut(s)	56, 81, 135, 313
MalI	GATC	2 cut(s)	36, 72
MboI	GATC	2 cut(s)	34, 70
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	1 cut(s)	242
MnlI	CCTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	76, 175
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	2 cut(s)	76, 175
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	2 cut(s)	34, 70
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	198
PasI	CCCWGGG	1 cut(s)	174
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	4, 215, 286
PkrI	GCNGC	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	74, 173
PspGI	CCWGG	2 cut(s)	74, 173
PspN4I	GGNNCC	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	34, 70
ScrFI	CCNGG	2 cut(s)	76, 175
SetI	ASST	5 cut(s)	42, 57, 253, 264, 297
SfcI	CTRYAG	1 cut(s)	219
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	1 cut(s)	142
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	4 cut(s)	56, 81, 135, 313
StyD4I	CCNGG	2 cut(s)	74, 173
TaaI	ACNGT	1 cut(s)	95
TasI	AATT	1 cut(s)	242
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	3 cut(s)	4, 215, 286
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	54, 269
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	100
XspI	CTAG	4 cut(s)	56, 81, 135, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.