Rh3DG315100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0022960
Physical Location & Seq
Forward (+)
33873952 .. 33874254
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG315100.1

Sequence Viewer

Length: 303 bp
ATGCTAATGTGGAGGGGGGCGAGCGGAGCTCTCATGACAATAAGCAAGAGTCTCAGATCAGACCTCCGGTTGTTCTGCGCCATTGAACTCACCGAAGAAGTTCGGGAGAGCGCGCATCCATTAGCCCAGACTCGACCCGACCCGCTTCGACACCTAGATTTCCCCACCGTCAGGATGCGGACCCTCCATGACTGGCTTGAGGCTCCCAGATCTCCCGATAAACGGCTTCGGTTGAGACACAAGCTAGCCATGGCCGCTACCGTCGTGATGGCTGTACTGTTTCTTCCGACGGAGCAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.5

Weight (kDa)

10.22

Isoelectric Point (pI)

59.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022960)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023164
rosa_samantha Rh3DG315100 Rh6BG439000 Rh6CG476200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 1 cut(s) 113
AciI CCGC 4 cut(s) 24, 143, 178, 255
AcoI YGGCCR 1 cut(s) 252
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 171, 222
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 2 cut(s) 29, 244
AluI AGCT 2 cut(s) 29, 244
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 2 cut(s) 56, 229
AoxI GGCC 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 3 cut(s) 80, 113, 115
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 82
AsuNHI GCTAGC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 180
BanII GRGCYC 1 cut(s) 31
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 56, 229
BfaI CTAG 2 cut(s) 155, 245
BglII AGATCT 1 cut(s) 209
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 2 cut(s) 182, 204
BmsI GCATC 2 cut(s) 124, 165
BmtI GCTAGC 1 cut(s) 248
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 222
Bse1I ACTGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 115, 180
BseLI CCNNNNNNNGG 2 cut(s) 171, 222
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 197
BsePI GCGCGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 171, 222
BsmAI GTCTC 2 cut(s) 56, 229
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 56, 209
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 4 cut(s) 24, 143, 178, 255
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 182, 204
BspOI GCTAGC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 249
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 2 cut(s) 56, 209
BssT1I CCWWGG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 169, 262, 279
BstC8I GCNNGC 3 cut(s) 22, 113, 246
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 115, 180
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 3 cut(s) 80, 113, 115
BstKTI GATC 2 cut(s) 59, 212
BstMAI GTCTC 2 cut(s) 56, 229
BstMBI GATC 2 cut(s) 56, 209
BstMWI GCNNNNNNNGC 2 cut(s) 26, 254
BstUI CGCG 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 115, 180
Cac8I GCNNGC 3 cut(s) 22, 113, 246
CciI TCATGA 1 cut(s) 33
CfoI GCGC 3 cut(s) 80, 113, 115
Cfr13I GGNCC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 275
CviAII CATG 3 cut(s) 34, 188, 250
CviJI RGCY 9 cut(s) 29, 125, 196, 203, 226, 244, 248, 254, 272
CviKI_1 RGCY 9 cut(s) 29, 125, 196, 203, 226, 244, 248, 254, 272
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 58, 211
DpnII GATC 2 cut(s) 56, 209
EaeI YGGCCR 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 3 cut(s) 37, 191, 253
FaiI YATR 3 cut(s) 35, 189, 251
FatI CATG 3 cut(s) 33, 187, 249
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 2 cut(s) 102, 187
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 155, 245
GlaI GCGC 3 cut(s) 79, 112, 114
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 67
HhaI GCGC 3 cut(s) 80, 113, 115
Hin1II CATG 3 cut(s) 37, 191, 253
Hin6I GCGC 3 cut(s) 78, 111, 113
HinP1I GCGC 3 cut(s) 78, 111, 113
HinfI GANTC 2 cut(s) 49, 130
HpaII CCGG 1 cut(s) 67
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 56, 61, 288
Hpy188III TCNNGA 5 cut(s) 34, 104, 172, 215, 265
Hpy99I CGWCG 2 cut(s) 266, 292
HpyCH4III ACNGT 3 cut(s) 169, 262, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 254
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 3 cut(s) 37, 191, 253
HspAI GCGC 3 cut(s) 78, 111, 113
Kzo9I GATC 2 cut(s) 56, 209
LmnI GCTCC 3 cut(s) 26, 208, 292
LpnPI CCDG 5 cut(s) 80, 140, 157, 178, 220
LweI GCATC 2 cut(s) 124, 165
MaeI CTAG 2 cut(s) 155, 245
MalI GATC 2 cut(s) 58, 211
MbiI CCGCTC 1 cut(s) 24
MboI GATC 2 cut(s) 56, 209
MboII GAAGA 2 cut(s) 107, 275
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 31
MlyI GAGTC 2 cut(s) 58, 124
MnlI CCTC 4 cut(s) 6, 74, 193, 194
MroXI GAANNNNTTC 1 cut(s) 99
MspI CCGG 1 cut(s) 67
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 26, 254
NcoI CCATGG 1 cut(s) 249
NdeII GATC 2 cut(s) 56, 209
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 3 cut(s) 37, 191, 253
NlaIV GGNNCC 2 cut(s) 182, 204
PagI TCATGA 1 cut(s) 33
PauI GCGCGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 2 cut(s) 57, 124
PpsI GAGTC 2 cut(s) 57, 124
Psp124BI GAGCTC 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 182, 204
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 209
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SacI GAGCTC 1 cut(s) 31
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 56, 209
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 2 cut(s) 58, 124
SduI GDGCHC 1 cut(s) 31
SetI ASST 5 cut(s) 31, 66, 156, 246, 302
SfaNI GCATC 2 cut(s) 124, 165
SinI GGWCC 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SsiI CCGC 4 cut(s) 24, 143, 178, 255
SspMI CTAG 2 cut(s) 155, 245
SstI GAGCTC 1 cut(s) 31
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 3 cut(s) 169, 262, 279
TaqI TCGA 2 cut(s) 133, 148
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 2 cut(s) 155, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.