Rh6BG439000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0022960
Physical Location & Seq
Reverse (-)
65779882 .. 65780313
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG439000.1

Sequence Viewer

Length: 432 bp
ATGCTAATATGGAGGGGGGCGAGCGGAGCTCTCATGACTCCAAGCAAGAGTCTCAGATCAGACCTTCGGTTGTTCTGCGCCACCGAACTCACCGAAAGAGTTCGGGAGAGCGCGCATCCACTAGCCCAGACTCGACCCGACCAGCTTCGACACCCAGATTTCCCCGCCGTCCTGATGCGGACCCTCCATGACCGGCCTGAGGCTCCCAGATCTCCCGATCAACAGCTCTGGTTGTGCGACAAGCTGGCCGTGGCCGCTACTGTCATGGTGGCTGTGCTGCTTCTTCCGGCGGAGCAGACGGGGCTGGTGGCGCAGGAGCGAGAGGGGCTGAGGCCGCGAACCACCTCTTCTTTAAGAGCAGAGAAGAACCCTCGCTTCTTCTCCATTTCTGGAGAGTCAGTTTCAGACTTTAGCCTGATTCTTTCCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

8.84

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022960)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023164
rosa_samantha Rh3DG315100 Rh6BG439000 Rh6CG476200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 2 cut(s) 113, 337
AciI CCGC 6 cut(s) 24, 165, 178, 255, 290, 335
AcoI YGGCCR 2 cut(s) 246, 252
AfiI CCNNNNNNNGG 1 cut(s) 199
AluBI AGCT 4 cut(s) 29, 145, 226, 244
AluI AGCT 4 cut(s) 29, 145, 226, 244
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 4 cut(s) 194, 246, 252, 332
ApeKI GCWGC 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 4 cut(s) 80, 113, 115, 313
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 180
AxyI CCTNAGG 1 cut(s) 198
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 264
BceAI ACGGC 2 cut(s) 152, 233
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 122
BglII AGATCT 1 cut(s) 209
BisI GCNGC 3 cut(s) 255, 278, 335
BlsI GCNGC 3 cut(s) 256, 279, 336
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 2 cut(s) 182, 204
BmsI GCATC 2 cut(s) 124, 165
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 192
Bse21I CCTNAGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 3 cut(s) 67, 189, 320
BsePI GCGCGC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 264
Bsh1236I CGCG 2 cut(s) 113, 337
BshFI GGCC 4 cut(s) 196, 248, 254, 334
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 2 cut(s) 193, 287
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 4 cut(s) 196, 248, 254, 334
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 56, 209, 217
BspACI CCGC 6 cut(s) 24, 165, 178, 255, 290, 335
BspANI GGCC 4 cut(s) 196, 248, 254, 334
BspCNI CTCAG 3 cut(s) 66, 190, 321
BspFNI CGCG 2 cut(s) 113, 337
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 182, 204
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 249
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 3 cut(s) 56, 209, 217
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 352
BstC8I GCNNGC 3 cut(s) 22, 113, 246
BstDEI CTNAG 3 cut(s) 53, 198, 329
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 2 cut(s) 113, 337
BstHHI GCGC 4 cut(s) 80, 113, 115, 313
BstKTI GATC 3 cut(s) 59, 212, 220
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 56, 209, 217
BstMWI GCNNNNNNNGC 6 cut(s) 26, 254, 301, 310, 325, 334
BstUI CGCG 2 cut(s) 113, 337
BstV1I GCAGC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 4 cut(s) 196, 248, 254, 334
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 3 cut(s) 22, 113, 246
CciI TCATGA 1 cut(s) 33
CfoI GCGC 4 cut(s) 80, 113, 115, 313
Cfr10I RCCGGY 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 180
CviAII CATG 3 cut(s) 34, 188, 265
DdeI CTNAG 3 cut(s) 53, 198, 329
DpnI GATC 3 cut(s) 58, 211, 219
DpnII GATC 3 cut(s) 56, 209, 217
EaeI YGGCCR 2 cut(s) 246, 252
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 29
Eco81I CCTNAGG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 3 cut(s) 37, 191, 268
FaiI YATR 4 cut(s) 10, 35, 189, 266
FatI CATG 3 cut(s) 33, 187, 264
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 3 cut(s) 255, 278, 335
FokI GGATG 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 255, 278, 335
FspBI CTAG 1 cut(s) 122
GlaI GCGC 4 cut(s) 79, 112, 114, 312
GluI GCNGC 3 cut(s) 255, 278, 335
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 4 cut(s) 196, 248, 254, 334
HapII CCGG 2 cut(s) 193, 287
HhaI GCGC 4 cut(s) 80, 113, 115, 313
Hin1II CATG 3 cut(s) 37, 191, 268
Hin6I GCGC 4 cut(s) 78, 111, 113, 311
HinP1I GCGC 4 cut(s) 78, 111, 113, 311
HinfI GANTC 5 cut(s) 37, 49, 130, 395, 418
HpaII CCGG 2 cut(s) 193, 287
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 56, 61, 406
Hpy188III TCNNGA 6 cut(s) 34, 104, 172, 215, 390, 429
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 254, 301, 310, 325, 334
HpyF3I CTNAG 3 cut(s) 53, 198, 329
Hsp92II CATG 3 cut(s) 37, 191, 268
HspAI GCGC 4 cut(s) 78, 111, 113, 311
Kzo9I GATC 3 cut(s) 56, 209, 217
LmnI GCTCC 4 cut(s) 26, 208, 292, 316
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 2 cut(s) 124, 165
MaeI CTAG 1 cut(s) 122
MalI GATC 3 cut(s) 58, 211, 219
MbiI CCGCTC 1 cut(s) 24
MboI GATC 3 cut(s) 56, 209, 217
MboII GAAGA 4 cut(s) 275, 339, 370, 376
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 31
MlyI GAGTC 4 cut(s) 31, 58, 124, 404
MnlI CCTC 7 cut(s) 6, 193, 194, 316, 324, 355, 381
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 1 cut(s) 353
MspI CCGG 2 cut(s) 193, 287
MvnI CGCG 2 cut(s) 113, 337
MwoI GCNNNNNNNGC 6 cut(s) 26, 254, 301, 310, 325, 334
NdeII GATC 3 cut(s) 56, 209, 217
NlaIII CATG 3 cut(s) 37, 191, 268
NlaIV GGNNCC 2 cut(s) 182, 204
PagI TCATGA 1 cut(s) 33
PauI GCGCGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 418
PkrI GCNGC 3 cut(s) 256, 279, 336
PleI GAGTC 4 cut(s) 31, 57, 124, 403
PpsI GAGTC 4 cut(s) 31, 57, 124, 403
Psp124BI GAGCTC 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 182, 204
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 209
PteI GCGCGC 1 cut(s) 111
SacI GAGCTC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 3 cut(s) 255, 278, 335
Sau3AI GATC 3 cut(s) 56, 209, 217
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 4 cut(s) 31, 58, 124, 404
SduI GDGCHC 1 cut(s) 31
SetI ASST 6 cut(s) 31, 66, 147, 228, 246, 347
SfaNI GCATC 2 cut(s) 124, 165
SinI GGWCC 1 cut(s) 180
SsiI CCGC 6 cut(s) 24, 165, 178, 255, 290, 335
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 31
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 133, 148
TauI GCSGC 2 cut(s) 257, 337
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TseI GCWGC 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.