Rh6CG476200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0022960
Physical Location & Seq
Forward (+)
64498285 .. 64498722
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG476200.1

Sequence Viewer

Length: 438 bp
ATGCTAATATGGAGGGGGGCGAGCGGAGCTCTCATGACTCCAAGCAAGAGTCTCAGATCAGACCTTCGGTTGTTCTGCGCCACCGAACTCACCGAAAGAGTCCGGGAGAGCGCGCATCCACTAGCCCAGACTCGACCCGACCAGCTTCGACACCCAGATTTCCCCGCCGTCCTGATGCGGACCCTCCATGACCGACCTGAGGCTCCCAGATCTCCCGATCAACAGCTCCGGTTGTGCGACAAGCTGGCCGTGGCCGCTACCGTCATGGTGGCTGTGCTGCTTCTTCCGGCGGAGCAGACCCGACATGGGGGAGCCGGAGCAAACGGGGCTGGTGGCGCAGGAGCGAGAGGGGCTGAGGCCGCGAACCACCTCTTCTTTAAGAGCAGAGAAGAACCCTTGCTTCTTCTCCATTTCTGGAGAGTCAGTTTCAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

10.21

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022960)

Species Orthologous Gene IDs
rosa_laevigata RLG00000023164
rosa_samantha Rh3DG315100 Rh6BG439000 Rh6CG476200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 2 cut(s) 113, 362
AciI CCGC 6 cut(s) 24, 165, 178, 255, 290, 360
AcoI YGGCCR 2 cut(s) 246, 252
AfiI CCNNNNNNNGG 3 cut(s) 199, 306, 307
AluBI AGCT 4 cut(s) 29, 145, 226, 244
AluI AGCT 4 cut(s) 29, 145, 226, 244
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 3 cut(s) 246, 252, 357
ApeKI GCWGC 1 cut(s) 277
AspLEI GCGC 4 cut(s) 80, 113, 115, 338
AspS9I GGNCC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 180
AxyI CCTNAGG 1 cut(s) 198
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 264
BceAI ACGGC 2 cut(s) 152, 233
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 122
BglII AGATCT 1 cut(s) 209
BisI GCNGC 3 cut(s) 255, 278, 360
BlsI GCNGC 3 cut(s) 256, 279, 361
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 3 cut(s) 182, 204, 313
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 2 cut(s) 124, 165
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpmI CTGGAG 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 1 cut(s) 409
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 306, 307
Bse21I CCTNAGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 3 cut(s) 199, 306, 307
BseMII CTCAG 3 cut(s) 67, 189, 345
BsePI GCGCGC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 264
Bsh1236I CGCG 2 cut(s) 113, 362
BshFI GGCC 3 cut(s) 248, 254, 359
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 4 cut(s) 103, 229, 287, 315
BslI CCNNNNNNNGG 3 cut(s) 199, 306, 307
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 3 cut(s) 248, 254, 359
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 56, 209, 217
BspACI CCGC 6 cut(s) 24, 165, 178, 255, 290, 360
BspANI GGCC 3 cut(s) 248, 254, 359
BspCNI CTCAG 3 cut(s) 66, 190, 346
BspFNI CGCG 2 cut(s) 113, 362
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 182, 204, 313
BsrBI CCGCTC 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 249
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 3 cut(s) 56, 209, 217
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 22, 113, 246
BstDEI CTNAG 3 cut(s) 53, 198, 354
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 2 cut(s) 113, 362
BstHHI GCGC 4 cut(s) 80, 113, 115, 338
BstKTI GATC 3 cut(s) 59, 212, 220
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 56, 209, 217
BstMWI GCNNNNNNNGC 6 cut(s) 26, 254, 326, 335, 350, 359
BstSCI CCNGG 1 cut(s) 102
BstUI CGCG 2 cut(s) 113, 362
BstV1I GCAGC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 3 cut(s) 248, 254, 359
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 3 cut(s) 22, 113, 246
CciI TCATGA 1 cut(s) 33
CfoI GCGC 4 cut(s) 80, 113, 115, 338
Cfr13I GGNCC 1 cut(s) 180
CviAII CATG 4 cut(s) 34, 188, 265, 305
DdeI CTNAG 3 cut(s) 53, 198, 354
DpnI GATC 3 cut(s) 58, 211, 219
DpnII GATC 3 cut(s) 56, 209, 217
EaeI YGGCCR 2 cut(s) 246, 252
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 29
Eco81I CCTNAGG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 4 cut(s) 37, 191, 268, 308
FaiI YATR 5 cut(s) 10, 35, 189, 266, 306
FatI CATG 4 cut(s) 33, 187, 264, 304
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 3 cut(s) 255, 278, 360
FokI GGATG 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 255, 278, 360
FspBI CTAG 1 cut(s) 122
GlaI GCGC 4 cut(s) 79, 112, 114, 337
GluI GCNGC 3 cut(s) 255, 278, 360
GsuI CTGGAG 1 cut(s) 436
HaeIII GGCC 3 cut(s) 248, 254, 359
HapII CCGG 4 cut(s) 103, 229, 287, 315
HhaI GCGC 4 cut(s) 80, 113, 115, 338
Hin1II CATG 4 cut(s) 37, 191, 268, 308
Hin6I GCGC 4 cut(s) 78, 111, 113, 336
HinP1I GCGC 4 cut(s) 78, 111, 113, 336
HinfI GANTC 5 cut(s) 37, 49, 99, 130, 420
HpaII CCGG 4 cut(s) 103, 229, 287, 315
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 56, 61, 431
Hpy188III TCNNGA 4 cut(s) 34, 172, 215, 415
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 254, 326, 335, 350, 359
HpyF3I CTNAG 3 cut(s) 53, 198, 354
Hsp92II CATG 4 cut(s) 37, 191, 268, 308
HspAI GCGC 4 cut(s) 78, 111, 113, 336
Kzo9I GATC 3 cut(s) 56, 209, 217
LmnI GCTCC 7 cut(s) 26, 208, 231, 292, 311, 317, 341
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 2 cut(s) 124, 165
MaeI CTAG 1 cut(s) 122
MalI GATC 3 cut(s) 58, 211, 219
MbiI CCGCTC 1 cut(s) 24
MboI GATC 3 cut(s) 56, 209, 217
MboII GAAGA 4 cut(s) 275, 364, 395, 401
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 31
MlyI GAGTC 5 cut(s) 31, 58, 108, 124, 429
MnlI CCTC 6 cut(s) 6, 193, 194, 341, 349, 380
MseI TTAA 1 cut(s) 378
MspI CCGG 4 cut(s) 103, 229, 287, 315
MspR9I CCNGG 1 cut(s) 104
MvnI CGCG 2 cut(s) 113, 362
MwoI GCNNNNNNNGC 6 cut(s) 26, 254, 326, 335, 350, 359
NciI CCSGG 1 cut(s) 104
NdeII GATC 3 cut(s) 56, 209, 217
NlaIII CATG 4 cut(s) 37, 191, 268, 308
NlaIV GGNNCC 3 cut(s) 182, 204, 313
PagI TCATGA 1 cut(s) 33
PauI GCGCGC 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 3 cut(s) 256, 279, 361
PleI GAGTC 5 cut(s) 31, 57, 107, 124, 428
PpsI GAGTC 5 cut(s) 31, 57, 107, 124, 428
Psp124BI GAGCTC 1 cut(s) 31
PspN4I GGNNCC 3 cut(s) 182, 204, 313
PspPI GGNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 209
PteI GCGCGC 1 cut(s) 111
SacI GAGCTC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 3 cut(s) 255, 278, 360
Sau3AI GATC 3 cut(s) 56, 209, 217
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 5 cut(s) 31, 58, 108, 124, 429
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 31
SetI ASST 7 cut(s) 31, 66, 147, 199, 228, 246, 372
SfaNI GCATC 2 cut(s) 124, 165
SinI GGWCC 1 cut(s) 180
SsiI CCGC 6 cut(s) 24, 165, 178, 255, 290, 360
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 133, 148
TaqII GACCGA 1 cut(s) 207
TauI GCSGC 2 cut(s) 257, 362
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TseI GCWGC 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 180
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.