Rh4AG169000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0022904
Physical Location & Seq
Reverse (-)
42415590 .. 42416158
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG169000.1

Sequence Viewer

Length: 417 bp
ATGCAACATGTCCAAATTTTTCTTTTCCTATATGATGAACGAGGATTTAAATGGACCAGGCTTCAATGCTTACTTCTTGGTCAGTATGCTATGGTGGAAGTGTCCTCTCCAATCCTAACATCAGTTTGCCTACTAGAAATGTGTACCAATATGACATATTTATGTTGGAAACGCTTATTGGAAAGAGACCCGTTGCTAGCTAGTAATTCTGGCCCAGATAATTTCTCACATGTCAAAGCAATGCAACAAATCTCAAATGATGACCTTGTGGATGATTCTTTGAAGACAGAAGAAGGCTATAGTGGGGACATTTTCACTAACTTGGCTTCACTAGCGCTTCAAATCTTAAGGGGCTTAAGTCAAGACATGAACAATATTGCAGCGGAAGTTACTAATATCAGGATGTTATGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.7

Weight (kDa)

4.72

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022904)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014884
rosa_samantha Rh4AG169000 Rh4BG165700 Rh4CG180500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 383
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 1 cut(s) 145
AfeI AGCGCT 1 cut(s) 336
AflII CTTAAG 2 cut(s) 346, 355
AflIII ACRYGT 2 cut(s) 7, 229
AgsI TTSAA 3 cut(s) 65, 283, 341
AjnI CCWGG 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 180
Aor51HI AGCGCT 1 cut(s) 336
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 15
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 2 cut(s) 54, 212
AsuNHI GCTAGC 1 cut(s) 196
AvaII GGWCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 4 cut(s) 134, 197, 201, 332
BfmI CTRYAG 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 338
BfrI CTTAAG 2 cut(s) 346, 355
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 54, 212
BmrFI CCNGG 1 cut(s) 58
BmtI GCTAGC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 277, 408
BseMI GCAATG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 392
BshFI GGCC 1 cut(s) 213
BslFI GGGAC 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 180
BspACI CCGC 1 cut(s) 383
BspANI GGCC 1 cut(s) 213
BspOI GCTAGC 1 cut(s) 200
BspTI CTTAAG 2 cut(s) 346, 355
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 58
BstAFI CTTAAG 2 cut(s) 346, 355
BstC8I GCNNGC 1 cut(s) 198
BstF5I GGATG 2 cut(s) 277, 408
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 2 cut(s) 11, 233
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 2 cut(s) 277, 408
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 2 cut(s) 54, 212
Csp6I GTAC 1 cut(s) 144
CviAII CATG 3 cut(s) 8, 230, 367
CviJI RGCY 6 cut(s) 61, 200, 213, 297, 326, 354
CviKI_1 RGCY 6 cut(s) 61, 200, 213, 297, 326, 354
CviQI GTAC 1 cut(s) 144
DraI TTTAAA 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 3 cut(s) 11, 233, 370
FaqI GGGAC 1 cut(s) 320
FatI CATG 3 cut(s) 7, 229, 366
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 4 cut(s) 134, 197, 201, 332
GlaI GCGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 1 cut(s) 213
HhaI GCGC 1 cut(s) 337
Hin1II CATG 3 cut(s) 11, 233, 370
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HinfI GANTC 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 362, 400
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 4, 244, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
Hsp92II CATG 3 cut(s) 11, 233, 370
HspAI GCGC 1 cut(s) 335
LpnPI CCDG 5 cut(s) 43, 70, 195, 228, 385
Lsp1109I GCAGC 1 cut(s) 392
MaeI CTAG 4 cut(s) 134, 197, 201, 332
MaeIII GTNAC 1 cut(s) 388
MboII GAAGA 2 cut(s) 295, 302
MluCI AATT 3 cut(s) 15, 205, 220
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 2 cut(s) 35, 115
MseI TTAA 3 cut(s) 48, 347, 356
MslI CAYNNNNRTG 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 383
MspCI CTTAAG 2 cut(s) 346, 355
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 332
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 3 cut(s) 11, 233, 370
NspI RCATGY 2 cut(s) 11, 233
PciI ACATGT 2 cut(s) 7, 229
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 382
PscI ACATGT 2 cut(s) 7, 229
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspPI GGNCC 2 cut(s) 54, 212
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 160
SaqAI TTAA 3 cut(s) 48, 347, 356
SatI GCNGC 1 cut(s) 381
Sau96I GGNCC 2 cut(s) 54, 212
ScrFI CCNGG 1 cut(s) 58
SetI ASST 2 cut(s) 202, 267
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 1 cut(s) 54
SmiI ATTTAAAT 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 346, 355
SmoI CTYRAG 2 cut(s) 346, 355
Sse9I AATT 3 cut(s) 15, 205, 220
SsiI CCGC 1 cut(s) 383
SspI AATATT 1 cut(s) 376
SspMI CTAG 4 cut(s) 134, 197, 201, 332
StyD4I CCNGG 1 cut(s) 56
SwaI ATTTAAAT 1 cut(s) 49
TasI AATT 3 cut(s) 15, 205, 220
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 3 cut(s) 48, 347, 356
Tru9I TTAA 3 cut(s) 48, 347, 356
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 51, 383
Vha464I CTTAAG 2 cut(s) 346, 355
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 15
XceI RCATGY 2 cut(s) 11, 233
XspI CTAG 4 cut(s) 134, 197, 201, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.