Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011739

Physical Location & Seq

Genomic Coordinates Reverse (-)

65567644 .. 65573048

Gene Structure 5405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG347300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTTCGAACCCCAATTTCCAGATTCGCCACACTTTTCAGAAACCCAAATCCCCATAAACTCTTACCCACAGACCCAATTCCCATATTCACCAAAAAAGCTCGAATCTTTGGCCCCAAACAAAAGCTCGAAATGCCATCCCAGCAAATCCTACCCATAACATACCACCCCCCATCTTCAAATCCCGCCACCACTGAAAAGTTACTAGTCAAATCTGAGGAGGACCCATCAACAAGGCTCCTCCTTTATTCACATTTCGAAGATGAAGAAAAGGCCGCGCCTTTGAAGCCCCTCCTTCCCAAGTCGGCGAGCTACACATTCAACACCTCCACCACCGCCGCCGCCGCAGCAGGTTCTGCCAATAACAACCAGAAGCGGCGGCGCCGGACGGCCAGCGATAACTCGCTTTATTCGTCGTCATCCAATTCCTCATCGGAGGAGGGCGCTGCCGACCGCCACTCTATCGCCGGCGATGTGGAGCACGCCGCCGCCGAGACGTACTTGATCACCCGGCTGAGCTTGAAGCTTTTGAGCTATCTTGGGGTAGGCTACAGATGGATTACAAGATTTTTGGCCCTCGGTTGTTATTCGTTTTTACTTATGCCAGGGTTTATTCAAGTTGGCTATTACTATTTCTTCTCCAAGCAGGTCCGCAGAGGTATAGTTTATGGCGATCAACCAAGAAATAGGCTAGATCTGTATCTACCCAAAAATTCTGATGGGCCAAAACCAGTCATTGCATTTGTAACTGGTGGAGCCTGGATTATTGGTTACAAAGCATGGGGTTCTCTTTTAGGAATACAGTTATCAGAACGAGACATCATAGTGGCATGCATAGATTACAGAAATTTCCCTCAGGGTACTATCAGTGATATGGTACAGGATGCTTCTCAAGGCATCTCATTTGTATGTAATCATATAGCTGAATATGGAGGCGATCCTGATAGGGTTTATGTGATGGGACAATCAGCTGGTGCACATATTGGTGCATGCTCAATTGTTGACCAGGCAATCAAGGAGCTTGGTGAAGGAGAGAGCACTTCTTGGAGTGTTTCCCAGATAAAGGCTTACTTTGGTCTTTCTGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010296 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051723 GO:0052689 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01120 ko01130 map00900 map01120 map01130

Pfam Domains

Protein Families

Abhydrolase_3 COesterase

Protein Analysis

363

Amino Acids

39.96

Weight (kDa)

8.97

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	231 - 341	9.7e-22	BD-FAE
COesterase	PF00135	231 - 328	3e-11	Carboxylesterase family
Abhydrolase_3	PF07859	248 - 332	9.3e-10	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26120
fragaria_vesca	FvH4_4g28400 FvH4_4g28400 FvH4_4g28400
malus_domestica	MD13G1049700.v1.1 MD16G1050700.v1.1
prunus_persica	Prupe.1G302000_v2.0.a1
pyrus_communis	pycom13g04400 pycom16g04440
rosa_chinensis	RchiOBHm_Chr4g0436331
rosa_laevigata	RLG00000006526
rosa_multiflora	Rmu_sc0007205.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377510
rosa_rugosa	Rorug04G0293200
rosa_samantha	Rh4AG347300 Rh4BG356200 Rh4CG370800 Rh4DG349900
rosa_wichuraiana	Rw4G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	341, 637
AccB1I	GGYRCC	1 cut(s)	381
AccII	CGCG	1 cut(s)	278
AclWI	GGATC	1 cut(s)	932
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	2 cut(s)	712, 847
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	3 cut(s)	500, 862, 879
AfiI	CCNNNNNNNGG	1 cut(s)	1063
AgsI	TTSAA	5 cut(s)	180, 286, 322, 523, 617
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	604, 758, 1005
AluBI	AGCT	9 cut(s)	101, 127, 312, 519, 526, 534, 923, 971, 1021
AluI	AGCT	9 cut(s)	101, 127, 312, 519, 526, 534, 923, 971, 1021
Alw21I	GWGCWC	3 cut(s)	483, 979, 1040
Alw26I	GTCTC	2 cut(s)	488, 810
Alw44I	GTGCAC	1 cut(s)	975
AlwI	GGATC	1 cut(s)	932
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	5 cut(s)	112, 273, 390, 573, 722
ApaLI	GTGCAC	1 cut(s)	975
ApeKI	GCWGC	2 cut(s)	347, 446
ApoI	RAATTY	2 cut(s)	712, 847
AspLEI	GCGC	3 cut(s)	280, 384, 446
AspS9I	GGNCC	5 cut(s)	113, 223, 574, 649, 722
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	3 cut(s)	82, 499, 1037
AsuII	TTCGAA	2 cut(s)	7, 258
AvaII	GGWCC	2 cut(s)	223, 649
AxyI	CCTNAGG	1 cut(s)	855
BaeGI	GKGCMC	1 cut(s)	979
BanI	GGYRCC	1 cut(s)	381
Bbv12I	GWGCWC	3 cut(s)	483, 979, 1040
BbvI	GCAGC	2 cut(s)	359, 433
BccI	CCATC	6 cut(s)	145, 181, 235, 549, 713, 952
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	3 cut(s)	606, 760, 1007
BclI	TGATCA	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	488, 810
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	2 cut(s)	206, 692
BfmI	CTRYAG	1 cut(s)	550
BfoI	RGCGCY	2 cut(s)	385, 447
BfuAI	ACCTGC	2 cut(s)	341, 637
BglII	AGATCT	1 cut(s)	694
BlpI	GCTNAGC	1 cut(s)	515
Bme1390I	CCNGG	4 cut(s)	511, 606, 760, 1007
Bme18I	GGWCC	2 cut(s)	223, 649
BmgT120I	GGNCC	5 cut(s)	113, 223, 574, 649, 722
BmiI	GGNNCC	5 cut(s)	115, 225, 239, 383, 757
BmrFI	CCNGG	4 cut(s)	511, 606, 760, 1007
BmsI	GCATC	2 cut(s)	874, 906
Bpu1102I	GCTNAGC	1 cut(s)	515
Bpu14I	TTCGAA	2 cut(s)	7, 258
BpuEI	CTTGAG	1 cut(s)	876
BpuMI	CCSGG	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	577, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	1063
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	731, 754
Bse21I	CCTNAGG	1 cut(s)	855
Bse3DI	GCAATG	1 cut(s)	735
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	3 cut(s)	606, 760, 1007
BseDI	CCNNGG	2 cut(s)	577, 605
BseGI	GGATG	3 cut(s)	137, 419, 889
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	1063
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	207, 506, 869
BseNI	ACTGG	2 cut(s)	731, 754
BseRI	GAGGAG	3 cut(s)	230, 233, 452
BseSI	GKGCMC	1 cut(s)	979
BseXI	GCAGC	2 cut(s)	359, 433
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	5 cut(s)	114, 275, 392, 575, 724
BshNI	GGYRCC	1 cut(s)	381
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	3 cut(s)	483, 979, 1040
BsiSI	CCGG	3 cut(s)	385, 468, 511
BslFI	GGGAC	1 cut(s)	975
BslI	CCNNNNNNNGG	1 cut(s)	1063
BsmAI	GTCTC	2 cut(s)	488, 810
BsmBI	CGTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	975
BsnI	GGCC	5 cut(s)	114, 275, 392, 575, 724
Bsp119I	TTCGAA	2 cut(s)	7, 258
Bsp1286I	GDGCHC	3 cut(s)	483, 979, 1040
Bsp143I	GATC	4 cut(s)	504, 673, 694, 937
Bsp1720I	GCTNAGC	1 cut(s)	515
BspANI	GGCC	5 cut(s)	114, 275, 392, 575, 724
BspCNI	CTCAG	3 cut(s)	208, 507, 868
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	5 cut(s)	115, 225, 239, 383, 757
BspMI	ACCTGC	2 cut(s)	341, 637
BspPI	GGATC	1 cut(s)	932
BspT104I	TTCGAA	2 cut(s)	7, 258
BspT107I	GGYRCC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	731, 754
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	577, 605
BssMI	GATC	4 cut(s)	504, 673, 694, 937
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	3 cut(s)	606, 760, 1007
Bst4CI	ACNGT	1 cut(s)	804
BstACI	GRCGYC	1 cut(s)	382
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBI	TTCGAA	2 cut(s)	7, 258
BstC8I	GCNNGC	6 cut(s)	310, 394, 469, 483, 832, 991
BstDEI	CTNAG	3 cut(s)	216, 515, 855
BstF5I	GGATG	3 cut(s)	137, 419, 889
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	2 cut(s)	385, 447
BstHHI	GCGC	3 cut(s)	280, 384, 446
BstKTI	GATC	4 cut(s)	507, 676, 697, 940
BstMAI	GTCTC	2 cut(s)	488, 810
BstMBI	GATC	4 cut(s)	504, 673, 694, 937
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 142, 286, 344, 347, 356
BstNI	CCWGG	3 cut(s)	606, 760, 1007
BstNSI	RCATGY	2 cut(s)	834, 993
BstSCI	CCNGG	4 cut(s)	509, 604, 758, 1005
BstSFI	CTRYAG	1 cut(s)	550
BstSLI	GKGCMC	1 cut(s)	979
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	359, 433
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
Bsu36I	CCTNAGG	1 cut(s)	855
BsuRI	GGCC	5 cut(s)	114, 275, 392, 575, 724
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	3 cut(s)	137, 419, 889
BtsIMutI	CAGTG	2 cut(s)	192, 874
BveI	ACCTGC	2 cut(s)	341, 637
Cac8I	GCNNGC	6 cut(s)	310, 394, 469, 483, 832, 991
CaiI	CAGNNNCTG	1 cut(s)	356
CfoI	GCGC	3 cut(s)	280, 384, 446
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	5 cut(s)	113, 223, 574, 649, 722
Csp6I	GTAC	3 cut(s)	499, 861, 878
CviAII	CATG	3 cut(s)	780, 831, 990
CviQI	GTAC	3 cut(s)	499, 861, 878
DdeI	CTNAG	3 cut(s)	216, 515, 855
DinI	GGCGCC	1 cut(s)	383
DpnI	GATC	4 cut(s)	506, 675, 696, 939
DpnII	GATC	4 cut(s)	504, 673, 694, 937
EaeI	YGGCCR	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	223, 649
Eco81I	CCTNAGG	1 cut(s)	855
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	604, 758, 1005
EcoT22I	ATGCAT	1 cut(s)	836
EgeI	GGCGCC	1 cut(s)	383
EheI	GGCGCC	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	3 cut(s)	783, 834, 993
FalI	AAGNNNNNCTT	2 cut(s)	1055, 1087
FaqI	GGGAC	1 cut(s)	975
FatI	CATG	3 cut(s)	779, 830, 989
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	504
FokI	GGATG	3 cut(s)	124, 406, 896
FspBI	CTAG	2 cut(s)	206, 692
GlaI	GCGC	3 cut(s)	279, 383, 445
GsaI	CCCAGC	1 cut(s)	145
HaeII	RGCGCY	2 cut(s)	385, 447
HaeIII	GGCC	5 cut(s)	114, 275, 392, 575, 724
HapII	CCGG	3 cut(s)	385, 468, 511
HhaI	GCGC	3 cut(s)	280, 384, 446
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	783, 834, 993
Hin6I	GCGC	3 cut(s)	278, 382, 444
HinP1I	GCGC	3 cut(s)	278, 382, 444
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	2 cut(s)	24, 105
HpaII	CCGG	3 cut(s)	385, 468, 511
HphI	GGTGA	3 cut(s)	82, 499, 1037
Hpy166II	GTNNAC	2 cut(s)	977, 1003
Hpy188I	TCNGA	5 cut(s)	41, 217, 436, 718, 811
Hpy188III	TCNNGA	3 cut(s)	21, 941, 1083
Hpy8I	GTNNAC	2 cut(s)	977, 1003
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	305, 1022
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	4 cut(s)	740, 834, 977, 989
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 142, 286, 344, 347, 356
HpyF3I	CTNAG	3 cut(s)	216, 515, 855
HpySE526I	ACGT	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	783, 834, 993
HspAI	GCGC	3 cut(s)	278, 382, 444
KasI	GGCGCC	1 cut(s)	381
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	504, 673, 694, 937
LmnI	GCTCC	4 cut(s)	243, 478, 755, 1018
Lsp1109I	GCAGC	2 cut(s)	359, 433
LweI	GCATC	2 cut(s)	874, 906
MaeI	CTAG	2 cut(s)	206, 692
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	3 cut(s)	201, 745, 770
MalI	GATC	4 cut(s)	506, 675, 696, 939
MboI	GATC	4 cut(s)	504, 673, 694, 937
MboII	GAAGA	4 cut(s)	168, 272, 278, 628
MfeI	CAATTG	1 cut(s)	996
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	3 cut(s)	483, 979, 1040
MluCI	AATT	6 cut(s)	15, 78, 424, 712, 847, 996
Mly113I	GGCGCC	1 cut(s)	382
Mph1103I	ATGCAT	1 cut(s)	836
MreI	CGCCGGCG	1 cut(s)	467
MroNI	GCCGGC	1 cut(s)	467
MslI	CAYNNNNRTG	3 cut(s)	824, 907, 984
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	3 cut(s)	385, 468, 511
MspR9I	CCNGG	4 cut(s)	511, 606, 760, 1007
MunI	CAATTG	1 cut(s)	996
MvaI	CCWGG	3 cut(s)	606, 760, 1007
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	6 cut(s)	133, 142, 286, 344, 347, 356
NaeI	GCCGGC	1 cut(s)	469
NarI	GGCGCC	1 cut(s)	382
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	4 cut(s)	504, 673, 694, 937
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	3 cut(s)	783, 834, 993
NlaIV	GGNNCC	5 cut(s)	115, 225, 239, 383, 757
NmeAIII	GCCGAG	1 cut(s)	517
NsiI	ATGCAT	1 cut(s)	836
NspI	RCATGY	2 cut(s)	834, 993
NspV	TTCGAA	2 cut(s)	7, 258
PaeI	GCATGC	2 cut(s)	834, 993
PcsI	WCGNNNNNNNCGW	2 cut(s)	410, 489
PdiI	GCCGGC	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	24, 105
PluTI	GGCGCC	1 cut(s)	385
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	604, 758, 1005
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	3 cut(s)	604, 758, 1005
PspN4I	GGNNCC	5 cut(s)	115, 225, 239, 383, 757
PspPI	GGNCC	5 cut(s)	113, 223, 574, 649, 722
PspPPI	RGGWCCY	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	3 cut(s)	500, 862, 879
RsaNI	GTAC	3 cut(s)	499, 861, 878
RseI	CAYNNNNRTG	3 cut(s)	824, 907, 984
Sau3AI	GATC	4 cut(s)	504, 673, 694, 937
Sau96I	GGNCC	5 cut(s)	113, 223, 574, 649, 722
ScrFI	CCNGG	4 cut(s)	511, 606, 760, 1007
SduI	GDGCHC	3 cut(s)	483, 979, 1040
SfaNI	GCATC	2 cut(s)	874, 906
SfcI	CTRYAG	1 cut(s)	550
SfoI	GGCGCC	1 cut(s)	383
SfuI	TTCGAA	2 cut(s)	7, 258
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	2 cut(s)	223, 649
SmiMI	CAYNNNNRTG	3 cut(s)	824, 907, 984
SmlI	CTYRAG	1 cut(s)	891
SmoI	CTYRAG	1 cut(s)	891
SpeI	ACTAGT	1 cut(s)	205
SphI	GCATGC	2 cut(s)	834, 993
Sse9I	AATT	6 cut(s)	15, 78, 424, 712, 847, 996
SspDI	GGCGCC	1 cut(s)	381
SspMI	CTAG	2 cut(s)	206, 692
StyD4I	CCNGG	4 cut(s)	509, 604, 758, 1005
TaaI	ACNGT	1 cut(s)	804
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	4 cut(s)	7, 103, 129, 258
TasI	AATT	6 cut(s)	15, 78, 424, 712, 847, 996
TauI	GCSGC	8 cut(s)	278, 341, 344, 347, 379, 382, 488, 491
TfiI	GAWTC	2 cut(s)	24, 105
TscAI	CASTG	2 cut(s)	199, 874
TseI	GCWGC	2 cut(s)	347, 446
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	199, 874
VneI	GTGCAC	1 cut(s)	975
VpaK11BI	GGWCC	2 cut(s)	223, 649
XapI	RAATTY	2 cut(s)	712, 847
XceI	RCATGY	2 cut(s)	834, 993
XspI	CTAG	2 cut(s)	206, 692
Zsp2I	ATGCAT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.