Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011739

Physical Location & Seq

Genomic Coordinates Reverse (-)

51615299 .. 51620607

Gene Structure 5309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG356200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTTTCGAACCCCAATTTCCAGATTCGCCACACTTTTCAGAAACCCAAATCCCCATAAACTCTTACCCACAGACCCAATTCCCATATTCACCAAAAAAGCTCGAATCTTTGGCCCCAAACAAAAGCTCAAGATGCCATCCCAGCAAATCCTACCCATAACATACCACCCCCCATCTTCAAATCCCGCCACCACTGAAAAGCTACTAGTCAAATCTGAGGAGGACCCATCAACAAGGCTCCTCCTTTATTCACATTTCGAAGATGAAGAAAAGGCCGCGCCTTTGAAGCCCCTTCTTCCCAAGTCGGCCAGCTACACATTCAACACCTCCACCACCGCCGCCGCCACCGCCGCCGCAGCAGGTTCTGCCAACAACAACCAGAAGCGGCGGCGCCGGACGGCCAGCGATAACTCGCTTTATTCGTCGTCATCCAATTCCTCATCGGAGGAGGGCGCTGCCGACCGCCAATCTATCGCCGGCGATGTGGAGCACGCCGCCGCCGATACGTACTTGATCACCCGGCTGAGCTTGAAGCTTTTGAGCTATCTTGGGGTAGGCTACAGATGGATTACAAGATTTTTGGCCCTCGGTTGTTATTCGTTTTTACTTATGCCAGGGTTTATTCAAGTTGGCTATTACTATTTCTTCTCCAAGCAGGTCCGCAGAGGTATAGTTTATGGCGATCAACCAAGAAATAGGCTAGATCTGTATCTACCCAAAAATTCTGATGGGCCAAAACCAGTCATTGCATTTGTAACTGGTGGAGCCTGGATTATTGGTTACAAAGCATGGGGTTCTCTTTTAGGAATACAGTTATCAGAACGAGACATCATAGTGGCATGCATAGATTACAGAAATTTCCCTCAGGGTACTATCAGTGATATGGTACAGGATGCTTCTCAAGGCATCTCATTTGTATGTAATCATATTGCTGAATATGGAGGCGATCCTGATAGGGTTTATGTGATGGGACAATCAGCTGGTGCACATATTGGTGCATGCTCAATTGTTGACCAGGCAATCAAGGAGCTTGGTGAAGGAGAGAGCACTTCTTGGAGTGTTTCCCAGATAAAGGCTTACTTTGGTCTTTCTGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010296 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051723 GO:0052689 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00900 ko01120 ko01130 map00900 map01120 map01130

Pfam Domains

Protein Families

Abhydrolase_3 COesterase

Protein Analysis

366

Amino Acids

40.18

Weight (kDa)

9.16

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	234 - 344	9.8e-22	BD-FAE
COesterase	PF00135	234 - 331	3e-11	Carboxylesterase family
Abhydrolase_3	PF07859	251 - 335	9.4e-10	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26120
fragaria_vesca	FvH4_4g28400 FvH4_4g28400 FvH4_4g28400
malus_domestica	MD13G1049700.v1.1 MD16G1050700.v1.1
prunus_persica	Prupe.1G302000_v2.0.a1
pyrus_communis	pycom13g04400 pycom16g04440
rosa_chinensis	RchiOBHm_Chr4g0436331
rosa_laevigata	RLG00000006526
rosa_multiflora	Rmu_sc0007205.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377510
rosa_rugosa	Rorug04G0293200
rosa_samantha	Rh4AG347300 Rh4BG356200 Rh4CG370800 Rh4DG349900
rosa_wichuraiana	Rw4G030360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	350, 646
AccB1I	GGYRCC	1 cut(s)	390
AccII	CGCG	1 cut(s)	278
AclWI	GGATC	1 cut(s)	941
AcoI	YGGCCR	2 cut(s)	306, 399
AcsI	RAATTY	2 cut(s)	721, 856
AcyI	GRCGYC	1 cut(s)	391
AfaI	GTAC	3 cut(s)	509, 871, 888
AfiI	CCNNNNNNNGG	1 cut(s)	1072
AgsI	TTSAA	5 cut(s)	180, 286, 322, 532, 626
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	613, 767, 1014
AluBI	AGCT	9 cut(s)	101, 127, 202, 312, 528, 535, 543, 980, 1030
AluI	AGCT	9 cut(s)	101, 127, 202, 312, 528, 535, 543, 980, 1030
Alw21I	GWGCWC	3 cut(s)	492, 988, 1049
Alw26I	GTCTC	1 cut(s)	819
Alw44I	GTGCAC	1 cut(s)	984
AlwI	GGATC	1 cut(s)	941
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	6 cut(s)	112, 273, 306, 399, 582, 731
ApaLI	GTGCAC	1 cut(s)	984
ApeKI	GCWGC	2 cut(s)	356, 455
ApoI	RAATTY	2 cut(s)	721, 856
AspLEI	GCGC	3 cut(s)	280, 393, 455
AspS9I	GGNCC	5 cut(s)	113, 223, 583, 658, 731
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	3 cut(s)	82, 508, 1046
AsuII	TTCGAA	2 cut(s)	7, 258
AvaII	GGWCC	2 cut(s)	223, 658
AxyI	CCTNAGG	1 cut(s)	864
BaeGI	GKGCMC	1 cut(s)	988
BanI	GGYRCC	1 cut(s)	390
Bbv12I	GWGCWC	3 cut(s)	492, 988, 1049
BbvI	GCAGC	2 cut(s)	368, 442
BccI	CCATC	6 cut(s)	145, 181, 235, 558, 722, 961
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	3 cut(s)	615, 769, 1016
BclI	TGATCA	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	819
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	2 cut(s)	206, 701
BfmI	CTRYAG	1 cut(s)	559
BfoI	RGCGCY	2 cut(s)	394, 456
BfuAI	ACCTGC	2 cut(s)	350, 646
BglII	AGATCT	1 cut(s)	703
BlpI	GCTNAGC	1 cut(s)	524
Bme1390I	CCNGG	4 cut(s)	520, 615, 769, 1016
Bme18I	GGWCC	2 cut(s)	223, 658
BmgT120I	GGNCC	5 cut(s)	113, 223, 583, 658, 731
BmiI	GGNNCC	5 cut(s)	115, 225, 239, 392, 766
BmrFI	CCNGG	4 cut(s)	520, 615, 769, 1016
BmsI	GCATC	3 cut(s)	123, 883, 915
Bpu1102I	GCTNAGC	1 cut(s)	524
Bpu14I	TTCGAA	2 cut(s)	7, 258
BpuEI	CTTGAG	2 cut(s)	113, 885
BpuMI	CCSGG	1 cut(s)	520
BsaAI	YACGTR	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	586, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	1072
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	740, 763
Bse21I	CCTNAGG	1 cut(s)	864
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	615, 769, 1016
BseDI	CCNNGG	2 cut(s)	586, 614
BseGI	GGATG	3 cut(s)	137, 428, 898
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	1072
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	3 cut(s)	207, 515, 878
BseNI	ACTGG	2 cut(s)	740, 763
BseRI	GAGGAG	3 cut(s)	230, 233, 461
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	2 cut(s)	368, 442
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	6 cut(s)	114, 275, 308, 401, 584, 733
BshNI	GGYRCC	1 cut(s)	390
BsiEI	CGRYCG	1 cut(s)	463
BsiHKAI	GWGCWC	3 cut(s)	492, 988, 1049
BsiSI	CCGG	3 cut(s)	394, 477, 520
BslFI	GGGAC	1 cut(s)	984
BslI	CCNNNNNNNGG	1 cut(s)	1072
BsmAI	GTCTC	1 cut(s)	819
BsmFI	GGGAC	1 cut(s)	984
BsnI	GGCC	6 cut(s)	114, 275, 308, 401, 584, 733
Bsp119I	TTCGAA	2 cut(s)	7, 258
Bsp1286I	GDGCHC	3 cut(s)	492, 988, 1049
Bsp143I	GATC	4 cut(s)	513, 682, 703, 946
Bsp1720I	GCTNAGC	1 cut(s)	524
BspANI	GGCC	6 cut(s)	114, 275, 308, 401, 584, 733
BspCNI	CTCAG	3 cut(s)	208, 516, 877
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	5 cut(s)	115, 225, 239, 392, 766
BspMI	ACCTGC	2 cut(s)	350, 646
BspPI	GGATC	1 cut(s)	941
BspT104I	TTCGAA	2 cut(s)	7, 258
BspT107I	GGYRCC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	740, 763
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	586, 614
BssMI	GATC	4 cut(s)	513, 682, 703, 946
BssNI	GRCGYC	1 cut(s)	391
Bst2UI	CCWGG	3 cut(s)	615, 769, 1016
Bst4CI	ACNGT	1 cut(s)	813
BstACI	GRCGYC	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	507
BstBI	TTCGAA	2 cut(s)	7, 258
BstC8I	GCNNGC	6 cut(s)	310, 403, 478, 492, 841, 1000
BstDEI	CTNAG	3 cut(s)	216, 524, 864
BstF5I	GGATG	3 cut(s)	137, 428, 898
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	2 cut(s)	394, 456
BstHHI	GCGC	3 cut(s)	280, 393, 455
BstKTI	GATC	4 cut(s)	516, 685, 706, 949
BstMAI	GTCTC	1 cut(s)	819
BstMBI	GATC	4 cut(s)	513, 682, 703, 946
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	7 cut(s)	133, 142, 286, 347, 350, 356, 365
BstNI	CCWGG	3 cut(s)	615, 769, 1016
BstNSI	RCATGY	2 cut(s)	843, 1002
BstSCI	CCNGG	4 cut(s)	518, 613, 767, 1014
BstSFI	CTRYAG	1 cut(s)	559
BstSLI	GKGCMC	1 cut(s)	988
BstSNI	TACGTA	1 cut(s)	507
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	368, 442
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	864
BsuRI	GGCC	6 cut(s)	114, 275, 308, 401, 584, 733
BtgZI	GCGATG	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	137, 428, 898
BtsIMutI	CAGTG	2 cut(s)	192, 883
BveI	ACCTGC	2 cut(s)	350, 646
Cac8I	GCNNGC	6 cut(s)	310, 403, 478, 492, 841, 1000
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	3 cut(s)	280, 393, 455
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	5 cut(s)	113, 223, 583, 658, 731
Csp6I	GTAC	3 cut(s)	508, 870, 887
CviAII	CATG	3 cut(s)	789, 840, 999
CviQI	GTAC	3 cut(s)	508, 870, 887
DdeI	CTNAG	3 cut(s)	216, 524, 864
DinI	GGCGCC	1 cut(s)	392
DpnI	GATC	4 cut(s)	515, 684, 705, 948
DpnII	GATC	4 cut(s)	513, 682, 703, 946
EaeI	YGGCCR	2 cut(s)	306, 399
Eco105I	TACGTA	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	223, 658
Eco81I	CCTNAGG	1 cut(s)	864
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	613, 767, 1014
EcoT22I	ATGCAT	1 cut(s)	845
EgeI	GGCGCC	1 cut(s)	392
EheI	GGCGCC	1 cut(s)	392
FaeI	CATG	3 cut(s)	792, 843, 1002
FalI	AAGNNNNNCTT	2 cut(s)	1064, 1096
FaqI	GGGAC	1 cut(s)	984
FatI	CATG	3 cut(s)	788, 839, 998
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	513
FokI	GGATG	3 cut(s)	124, 415, 905
FspBI	CTAG	2 cut(s)	206, 701
GlaI	GCGC	3 cut(s)	279, 392, 454
GsaI	CCCAGC	1 cut(s)	145
HaeII	RGCGCY	2 cut(s)	394, 456
HaeIII	GGCC	6 cut(s)	114, 275, 308, 401, 584, 733
HapII	CCGG	3 cut(s)	394, 477, 520
HhaI	GCGC	3 cut(s)	280, 393, 455
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	3 cut(s)	792, 843, 1002
Hin6I	GCGC	3 cut(s)	278, 391, 453
HinP1I	GCGC	3 cut(s)	278, 391, 453
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	2 cut(s)	24, 105
HpaII	CCGG	3 cut(s)	394, 477, 520
HphI	GGTGA	3 cut(s)	82, 508, 1046
Hpy166II	GTNNAC	2 cut(s)	986, 1012
Hpy188I	TCNGA	5 cut(s)	41, 217, 445, 727, 820
Hpy188III	TCNNGA	4 cut(s)	21, 130, 950, 1092
Hpy8I	GTNNAC	2 cut(s)	986, 1012
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	302, 1031
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	4 cut(s)	749, 843, 986, 998
HpyF10VI	GCNNNNNNNGC	7 cut(s)	133, 142, 286, 347, 350, 356, 365
HpyF3I	CTNAG	3 cut(s)	216, 524, 864
HpySE526I	ACGT	1 cut(s)	506
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	792, 843, 1002
HspAI	GCGC	3 cut(s)	278, 391, 453
KasI	GGCGCC	1 cut(s)	390
KroI	GCCGGC	1 cut(s)	476
KroNI	GCCGGC	1 cut(s)	478
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	4 cut(s)	513, 682, 703, 946
LmnI	GCTCC	4 cut(s)	243, 487, 764, 1027
Lsp1109I	GCAGC	2 cut(s)	368, 442
LweI	GCATC	3 cut(s)	123, 883, 915
MaeI	CTAG	2 cut(s)	206, 701
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	2 cut(s)	754, 779
MalI	GATC	4 cut(s)	515, 684, 705, 948
MboI	GATC	4 cut(s)	513, 682, 703, 946
MboII	GAAGA	5 cut(s)	168, 272, 278, 287, 637
MfeI	CAATTG	1 cut(s)	1005
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	3 cut(s)	492, 988, 1049
MluCI	AATT	6 cut(s)	15, 78, 433, 721, 856, 1005
Mly113I	GGCGCC	1 cut(s)	391
Mph1103I	ATGCAT	1 cut(s)	845
MreI	CGCCGGCG	1 cut(s)	476
MroNI	GCCGGC	1 cut(s)	476
MslI	CAYNNNNRTG	3 cut(s)	833, 916, 993
MspA1I	CMGCKG	1 cut(s)	980
MspI	CCGG	3 cut(s)	394, 477, 520
MspR9I	CCNGG	4 cut(s)	520, 615, 769, 1016
MunI	CAATTG	1 cut(s)	1005
MvaI	CCWGG	3 cut(s)	615, 769, 1016
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	7 cut(s)	133, 142, 286, 347, 350, 356, 365
NaeI	GCCGGC	1 cut(s)	478
NarI	GGCGCC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	4 cut(s)	513, 682, 703, 946
NgoMIV	GCCGGC	1 cut(s)	476
NlaIII	CATG	3 cut(s)	792, 843, 1002
NlaIV	GGNNCC	5 cut(s)	115, 225, 239, 392, 766
NsiI	ATGCAT	1 cut(s)	845
NspI	RCATGY	2 cut(s)	843, 1002
NspV	TTCGAA	2 cut(s)	7, 258
PaeI	GCATGC	2 cut(s)	843, 1002
PcsI	WCGNNNNNNNCGW	2 cut(s)	419, 498
PdiI	GCCGGC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	24, 105
PluTI	GGCGCC	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	507
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	613, 767, 1014
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	3 cut(s)	613, 767, 1014
PspN4I	GGNNCC	5 cut(s)	115, 225, 239, 392, 766
PspPI	GGNCC	5 cut(s)	113, 223, 583, 658, 731
PspPPI	RGGWCCY	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	3 cut(s)	509, 871, 888
RsaNI	GTAC	3 cut(s)	508, 870, 887
RseI	CAYNNNNRTG	3 cut(s)	833, 916, 993
Sau3AI	GATC	4 cut(s)	513, 682, 703, 946
Sau96I	GGNCC	5 cut(s)	113, 223, 583, 658, 731
ScrFI	CCNGG	4 cut(s)	520, 615, 769, 1016
SduI	GDGCHC	3 cut(s)	492, 988, 1049
SfaNI	GCATC	3 cut(s)	123, 883, 915
SfcI	CTRYAG	1 cut(s)	559
SfoI	GGCGCC	1 cut(s)	392
SfuI	TTCGAA	2 cut(s)	7, 258
SgrAI	CRCCGGYG	1 cut(s)	476
SinI	GGWCC	2 cut(s)	223, 658
SmiMI	CAYNNNNRTG	3 cut(s)	833, 916, 993
SmlI	CTYRAG	2 cut(s)	128, 900
SmoI	CTYRAG	2 cut(s)	128, 900
SnaBI	TACGTA	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	205
SphI	GCATGC	2 cut(s)	843, 1002
Sse9I	AATT	6 cut(s)	15, 78, 433, 721, 856, 1005
SspDI	GGCGCC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	206, 701
StyD4I	CCNGG	4 cut(s)	518, 613, 767, 1014
TaaI	ACNGT	1 cut(s)	813
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	3 cut(s)	7, 103, 258
TasI	AATT	6 cut(s)	15, 78, 433, 721, 856, 1005
TauI	GCSGC	9 cut(s)	278, 341, 344, 353, 356, 388, 391, 497, 500
TfiI	GAWTC	2 cut(s)	24, 105
TscAI	CASTG	2 cut(s)	199, 883
TseI	GCWGC	2 cut(s)	356, 455
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	199, 883
VneI	GTGCAC	1 cut(s)	984
VpaK11BI	GGWCC	2 cut(s)	223, 658
XapI	RAATTY	2 cut(s)	721, 856
XceI	RCATGY	2 cut(s)	843, 1002
XspI	CTAG	2 cut(s)	206, 701
Zsp2I	ATGCAT	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.