Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006443

Physical Location & Seq

Genomic Coordinates Forward (+)

69984664 .. 69991295

Gene Structure 6632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGGTGTCGAAATCGTATTCCAATCTGTTGGAGCTTGCCTCAGGCGAGTCCCCTACCTTTGGCCGAATTGGCCGGAGAATGCCACGCATCATGACTGTTGCTGGCTTGATATCTGATGTTGATGATGACAAGTCGGAGAGTGTGTGCTCCGAGGTGTCCTCATCGTCGGTCCATCGTGACCGAATCATTATAGTGGCAAATCAGCTGCCCATTAGGGCTCAGAGAAAAGAAGATTCTAGTAAGGGTTGGATATTCAGTTGGGATGAGAATTCTCTGCTACTCCAACTCAAAGATGGTTTAGGGGATGATGAGATTGAGGTGATTTATGTGGGTTGTCTCAAGGAAGAGATTCACCCCAATGAGCAAGATGAGGTTTCCCAAATCCTCCTTGAGACCTTTAAGTGTGTCCCAACCTTTCTCCCACCAGAGCTTTTCAGCCGGTATTATCATGGGTTTTGCAAGCAACAGTTGTGGCCACTCTTTCATTACATGCTACCCCTGTCGCCCGACCTTGGTGGTAGGTTTAACCGCTCGTTGTGGCAAGCATATGTATCAGTCAACAAGATTTTTGCGGATAGGATCATGGAAGTCATTAACCCAGAAGATGATTTTGTGTGGATACATGATTATCATCTGATGGTGTTACCAACTTTCTTGCGCAAGAGATTCAATCGCGTGAAACTTGGCTTTTTCCTCCATAGCCCTTTCCCTTCATCAGAAATTTACAAGACATTGCCTATTAGAGAGGAGATTCTACGAGCCCTTTTGAACTCTGATTTAATTGGATTCCATACATTTGACTATGCAAGGCATTTCCTCTCCTGCTGTAGTCGAATGCTTGGTCTTACCTATGAATCCAAGCGAGGTTATATAGGCCTCGAGTATTATGGTCGGACTGTTAGCATCAAAATTCTTCCGGTTGGCATACATATGGGTCAACTGCAGTCAGTTTTGAGTCTCCCAGAGACAGAAGCCAAGGTTGCTGAGCTCAAGACACAGTTCTGTGCTCGGGGTAGGACAATGTTACTTGGAGTGGATGACATGGATATATTTAAGGGCATAAGTTTGAAGCTTTTGGCAATGGAGCAGCTGCTTATTCAGCACCCTGAGTGGCAGGGAAAGGTCGTATTGGTGCAGATAGCCAATCCAGCCAGGGGTCGGGGAAAAGATGTGAAAGAAGTTCAGGCCGAGACATCATCAACTGTGAAGCGAATTAATGAAACATTTGGCAAACCTGGGTATAATCCTGTTGTCTTGATTGATGAGCCACTTAAGTTTTATGAGAGAATTGCATACTATGTAGTTGCAGAGTGTTGTTTGGTTACGGCTGTCAGGGATGGAATGAATTTGATACCATATGAATACATTATTAGTCGTCAAGGAAATGAAAAATTGGATAAGGTTTTGGGATTGGATTCCTCTGTTCCCAAGAAGAGTATGTTAGTTGTCTCTGAGTTCATTGGCTGCTCCCCTTCTTTGAGTGGAGCAATTCGTGTGAACCCCTGGAATATTGATGCTGTGGCAGATGCAATGGACTGTTCTCTGGAGATGGCGGAGCCAGAAAAACAGCTTCGGCATGAGAAACATTATAAATATGTCAGCACCCATGATGTTGGTTACTGGGCTCGCAGTTTTCTCCAAGACTTGGAAAGAACATGCAAGGGTCATTTGCGTCAAAGGTGCTGGGGTATTGGGTTTGGGTTGAGTTTTAGAGTTGTGGCTCTTGATCCAAACTTCAAGAAGCTCTCTGTGGAATACATAGTGTCAGCCTACAAAAGGACTACAACTAGGGCAATTCTTCTCGACTATGATGGCACATTGAAGCCTCAGGCATCCATTGATAAGAGTCCAAATTCTAAATCCATCGAAATCCTAAATAGCCTATGCAGGGACAAGAACAACATGGTTTTAATTGTTAGTGCTAAGAGTCGAAAAACACTTGCCGAATGGTTCTCTCCTTGTGAGAAGCTTGGAATTGCAGCTGAGCATGGCTACTTTCTACGGTCGAAGCAAGATACAGAATGGGAGACATTGGTACCAGTTGCAGACAGTAGTTGGAAGCAGATTGCAGAGCCCGTCATGAAGCTTTACACAGAAACAACTGATGGTTCCACCATTGAAGATAAGGAAACTTCACTTCTCTGGTGTTATGAGGATGCAGATCCAGACTTTGGATCATGCCAAGCCAAGGAACTTATGGATCATCTTGAAAGTGTGCTTGCTAATGAACCCGTTACTGTTAAAAGTGGGCAGACTTTTGTGGAGGTTAAACCACAGGTTCGGTACATGCCTCCTTGCAATCTTTTACTGTTCTGTAAAACTCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003825 GO:0004805 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0033554 GO:0034637 GO:0035251 GO:0042578 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0050896 GO:0051716 GO:0070413 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

776

Amino Acids

88.37

Weight (kDa)

6.24

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_20	PF00982	61 - 550	2.6e-186	Glycosyltransferase family 20
Trehalose_PPase	PF02358	600 - 760	7.1e-54	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68020 AT1G68020 AT1G68020
fragaria_vesca	FvH4_4g33380 FvH4_4g33380 FvH4_4g33380 FvH4_4g33380 FvH4_4g33380 FvH4_4g33380 FvH4_4g33380 FvH4_4g33380
malus_domestica	MD16G1016800.v1.1
prunus_persica	Prupe.1G334900_v2.0.a1 Prupe.1G334900_v2.0.a1
pyrus_communis	pycom16g01540
rosa_chinensis	RchiOBHm_Chr4g0442641
rosa_laevigata	RLG00000005995
rosa_multiflora	Rmu_ssc0000204.1_g000032
rosa_roxburghii	Rroxscaffold_5G00383450
rosa_rugosa	Rorug04G0341700 Rorug04G0341800.1
rosa_samantha	Rh4AG394300 Rh4BG407300 Rh4CG422700 Rh4DG401300
rosa_wichuraiana	Rw4G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1590
Acc16I	TGCGCA	1 cut(s)	659
Acc65I	GGTACC	1 cut(s)	2035
AccB1I	GGYRCC	1 cut(s)	2035
AccB7I	CCANNNNNTGG	2 cut(s)	1645, 2171
AccBSI	CCGCTC	1 cut(s)	531
AccII	CGCG	1 cut(s)	675
AciI	CCGC	3 cut(s)	529, 572, 1553
AclWI	GGATC	5 cut(s)	587, 1721, 2156, 2182, 2208
AcoI	YGGCCR	3 cut(s)	61, 70, 473
AcsI	RAATTY	5 cut(s)	268, 720, 909, 1345, 1852
AfaI	GTAC	2 cut(s)	2037, 2285
AfiI	CCNNNNNNNGG	9 cut(s)	59, 512, 1154, 1158, 1645, 1776, 1888, 2171, 2188
AflII	CTTAAG	1 cut(s)	1271
AgsI	TTSAA	7 cut(s)	670, 769, 1069, 1738, 1822, 2120, 2210
AjnI	CCWGG	3 cut(s)	1151, 1234, 1502
Alw21I	GWGCWC	3 cut(s)	149, 990, 1009
Alw26I	GTCTC	7 cut(s)	341, 386, 959, 962, 1184, 1453, 2021
AlwI	GGATC	5 cut(s)	587, 1721, 2156, 2182, 2208
Ama87I	CYCGRG	2 cut(s)	878, 1008
AoxI	GGCC	5 cut(s)	61, 70, 473, 874, 1185
ApeKI	GCWGC	5 cut(s)	205, 1087, 1090, 1464, 1979
ApoI	RAATTY	5 cut(s)	268, 720, 909, 1345, 1852
ArsI	GACNNNNNNTTYG	2 cut(s)	826, 858
AseI	ATTAAT	1 cut(s)	1215
Asp700I	GAANNNNTTC	1 cut(s)	348
Asp718I	GGTACC	1 cut(s)	2035
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	331, 344
AvaI	CYCGRG	2 cut(s)	878, 1008
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	2 cut(s)	40, 1827
BaeI	ACNNNNGTAYC	2 cut(s)	2019, 2052
BalI	TGGCCA	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	2035
BanII	GRGCYC	5 cut(s)	220, 763, 990, 1627, 2076
Bbv12I	GWGCWC	3 cut(s)	149, 990, 1009
BbvI	GCAGC	5 cut(s)	192, 1077, 1099, 1451, 1991
BccI	CCATC	8 cut(s)	180, 287, 631, 1331, 1543, 1805, 1871, 2099
BceAI	ACGGC	1 cut(s)	1341
BciT130I	CCWGG	3 cut(s)	1153, 1236, 1504
BciVI	GTATCC	1 cut(s)	612
BcoDI	GTCTC	7 cut(s)	341, 386, 959, 962, 1184, 1453, 2021
BfaI	CTAG	2 cut(s)	237, 1788
BfmI	CTRYAG	2 cut(s)	826, 941
BfrI	CTTAAG	1 cut(s)	1271
BfuI	GTATCC	1 cut(s)	612
BglI	GCCNNNNNGGC	1 cut(s)	69
BisI	GCNGC	5 cut(s)	206, 1088, 1091, 1465, 1980
BlpI	GCTNAGC	2 cut(s)	984, 1983
BlsI	GCNGC	5 cut(s)	207, 1089, 1092, 1466, 1981
Bme1390I	CCNGG	3 cut(s)	1153, 1236, 1504
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	2 cut(s)	878, 1008
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	1557, 2037, 2110
BmrFI	CCNGG	3 cut(s)	1153, 1236, 1504
BmrI	ACTGGG	1 cut(s)	1630
BmsI	GCATC	6 cut(s)	96, 912, 1504, 1516, 1841, 2146
BmuI	ACTGGG	1 cut(s)	1630
BplI	GAGNNNNNCTC	4 cut(s)	23, 55, 143, 175
BpmI	CTGGAG	1 cut(s)	1565
Bpu1102I	GCTNAGC	2 cut(s)	984, 1983
BpuEI	CTTGAG	3 cut(s)	323, 410, 974
BsaBI	GATNNNNATC	2 cut(s)	630, 2160
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	7 cut(s)	150, 511, 975, 1152, 1235, 1502, 2187
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	9 cut(s)	59, 512, 1154, 1158, 1645, 1776, 1888, 2171, 2188
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	2 cut(s)	1625, 2039
Bse21I	CCTNAGG	2 cut(s)	40, 1827
Bse3DI	GCAATG	3 cut(s)	731, 1086, 1536
Bse8I	GATNNNNATC	2 cut(s)	630, 2160
BseBI	CCWGG	3 cut(s)	1153, 1236, 1504
BseDI	CCNNGG	7 cut(s)	150, 511, 975, 1152, 1235, 1502, 2187
BseGI	GGATG	6 cut(s)	268, 310, 1042, 1342, 1832, 2161
BseJI	GATNNNNATC	2 cut(s)	630, 2160
BseLI	CCNNNNNNNGG	9 cut(s)	59, 512, 1154, 1158, 1645, 1776, 1888, 2171, 2188
BseMI	GCAATG	3 cut(s)	731, 1086, 1536
BseMII	CTCAG	7 cut(s)	54, 233, 975, 1098, 1443, 1841, 1974
BseNI	ACTGG	2 cut(s)	1625, 2039
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	5 cut(s)	192, 1077, 1099, 1451, 1991
BseYI	CCCAGC	1 cut(s)	1683
BsgI	GTGCAG	1 cut(s)	1154
Bsh1236I	CGCG	1 cut(s)	675
Bsh1285I	CGRYCG	1 cut(s)	2006
BshFI	GGCC	5 cut(s)	63, 72, 475, 876, 1187
BshNI	GGYRCC	1 cut(s)	2035
BsiEI	CGRYCG	1 cut(s)	2006
BsiHKAI	GWGCWC	3 cut(s)	149, 990, 1009
BsiHKCI	CYCGRG	2 cut(s)	878, 1008
BsiSI	CCGG	3 cut(s)	73, 439, 917
BslFI	GGGAC	3 cut(s)	34, 392, 1904
BslI	CCNNNNNNNGG	9 cut(s)	59, 512, 1154, 1158, 1645, 1776, 1888, 2171, 2188
BsmAI	GTCTC	7 cut(s)	341, 386, 959, 962, 1184, 1453, 2021
BsmFI	GGGAC	3 cut(s)	34, 392, 1904
BsmI	GAATGC	2 cut(s)	84, 840
BsnI	GGCC	5 cut(s)	63, 72, 475, 876, 1187
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	2 cut(s)	878, 1008
Bsp1286I	GDGCHC	7 cut(s)	149, 220, 763, 990, 1009, 1627, 2076
Bsp143I	GATC	6 cut(s)	579, 1726, 2161, 2174, 2200, 2324
Bsp1720I	GCTNAGC	2 cut(s)	984, 1983
BspACI	CCGC	3 cut(s)	529, 572, 1553
BspANI	GGCC	5 cut(s)	63, 72, 475, 876, 1187
BspCNI	CTCAG	7 cut(s)	53, 232, 976, 1099, 1444, 1840, 1975
BspFNI	CGCG	1 cut(s)	675
BspHI	TCATGA	2 cut(s)	90, 2079
BspLI	GGNNCC	3 cut(s)	1557, 2037, 2110
BspMAI	CTGCAG	1 cut(s)	945
BspPI	GGATC	5 cut(s)	587, 1721, 2156, 2182, 2208
BspT107I	GGYRCC	1 cut(s)	2035
BspTI	CTTAAG	1 cut(s)	1271
BspTNI	GGTCTC	1 cut(s)	386
BsrBI	CCGCTC	1 cut(s)	531
BsrDI	GCAATG	3 cut(s)	731, 1086, 1536
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	1625, 2039
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	7 cut(s)	150, 511, 975, 1152, 1235, 1502, 2187
BssMI	GATC	6 cut(s)	579, 1726, 2161, 2174, 2200, 2324
BssT1I	CCWWGG	3 cut(s)	511, 975, 2187
Bst2UI	CCWGG	3 cut(s)	1153, 1236, 1504
Bst6I	CTCTTC	2 cut(s)	339, 1427
BstAFI	CTTAAG	1 cut(s)	1271
BstC8I	GCNNGC	6 cut(s)	36, 103, 461, 543, 1627, 2220
BstDEI	CTNAG	8 cut(s)	40, 219, 984, 1107, 1452, 1827, 1923, 1983
BstENI	CCTNNNNNAGG	1 cut(s)	1774
BstF5I	GGATG	6 cut(s)	268, 310, 1042, 1342, 1832, 2161
BstFNI	CGCG	1 cut(s)	675
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	6 cut(s)	582, 1729, 2164, 2177, 2203, 2327
BstMAI	GTCTC	7 cut(s)	341, 386, 959, 962, 1184, 1453, 2021
BstMBI	GATC	6 cut(s)	579, 1726, 2161, 2174, 2200, 2324
BstMCI	CGRYCG	1 cut(s)	2006
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 980, 1099, 1148
BstNI	CCWGG	3 cut(s)	1153, 1236, 1504
BstNSI	RCATGY	3 cut(s)	493, 1659, 2290
BstSCI	CCNGG	3 cut(s)	1151, 1234, 1502
BstSFI	CTRYAG	2 cut(s)	826, 941
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	5 cut(s)	192, 1077, 1099, 1451, 1991
BstX2I	RGATCY	1 cut(s)	2161
BstXI	CCANNNNNNTGG	2 cut(s)	28, 1613
BstYI	RGATCY	1 cut(s)	2161
Bsu36I	CCTNAGG	2 cut(s)	40, 1827
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	5 cut(s)	63, 72, 475, 876, 1187
BtsCI	GGATG	6 cut(s)	268, 310, 1042, 1342, 1832, 2161
Cac8I	GCNNGC	6 cut(s)	36, 103, 461, 543, 1627, 2220
CciI	TCATGA	2 cut(s)	90, 2079
CfoI	GCGC	1 cut(s)	660
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	1661
Csp6I	GTAC	2 cut(s)	2036, 2284
CspCI	CAANNNNNGTGG	2 cut(s)	452, 487
CviQI	GTAC	2 cut(s)	2036, 2284
DdeI	CTNAG	8 cut(s)	40, 219, 984, 1107, 1452, 1827, 1923, 1983
DpnI	GATC	6 cut(s)	581, 1728, 2163, 2176, 2202, 2326
DpnII	GATC	6 cut(s)	579, 1726, 2161, 2174, 2200, 2324
EaeI	YGGCCR	3 cut(s)	61, 70, 473
Eam1104I	CTCTTC	2 cut(s)	339, 1427
EarI	CTCTTC	2 cut(s)	339, 1427
EciI	GGCGGA	1 cut(s)	1568
Ecl136II	GAGCTC	1 cut(s)	988
Eco130I	CCWWGG	3 cut(s)	511, 975, 2187
Eco147I	AGGCCT	1 cut(s)	876
Eco24I	GRGCYC	5 cut(s)	220, 763, 990, 1627, 2076
Eco31I	GGTCTC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	988
Eco81I	CCTNAGG	2 cut(s)	40, 1827
Eco88I	CYCGRG	2 cut(s)	878, 1008
EcoICRI	GAGCTC	1 cut(s)	988
EcoNI	CCTNNNNNAGG	1 cut(s)	1774
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	3 cut(s)	1151, 1234, 1502
EcoRV	GATATC	1 cut(s)	111
EcoT14I	CCWWGG	3 cut(s)	511, 975, 2187
EcoT38I	GRGCYC	5 cut(s)	220, 763, 990, 1627, 2076
ErhI	CCWWGG	3 cut(s)	511, 975, 2187
FaqI	GGGAC	3 cut(s)	34, 392, 1904
FauNDI	CATATG	3 cut(s)	547, 930, 1357
Fnu4HI	GCNGC	5 cut(s)	206, 1088, 1091, 1465, 1980
FokI	GGATG	6 cut(s)	275, 317, 1049, 1349, 1819, 2168
FriOI	GRGCYC	5 cut(s)	220, 763, 990, 1627, 2076
Fsp4HI	GCNGC	5 cut(s)	206, 1088, 1091, 1465, 1980
FspBI	CTAG	2 cut(s)	237, 1788
FspI	TGCGCA	1 cut(s)	659
GlaI	GCGC	1 cut(s)	659
GluI	GCNGC	5 cut(s)	206, 1088, 1091, 1465, 1980
GsaI	CCCAGC	1 cut(s)	1687
GsuI	CTGGAG	1 cut(s)	1565
HaeIII	GGCC	5 cut(s)	63, 72, 475, 876, 1187
HapII	CCGG	3 cut(s)	73, 439, 917
HgaI	GACGC	1 cut(s)	1661
HhaI	GCGC	1 cut(s)	660
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	2 cut(s)	559, 938
HindII	GTYRAC	2 cut(s)	559, 938
HindIII	AAGCTT	3 cut(s)	1070, 1967, 2084
HpaII	CCGG	3 cut(s)	73, 439, 917
HphI	GGTGA	2 cut(s)	331, 344
Hpy166II	GTNNAC	3 cut(s)	559, 938, 1498
Hpy188I	TCNGA	9 cut(s)	115, 136, 151, 222, 636, 718, 775, 894, 1453
Hpy8I	GTNNAC	3 cut(s)	559, 938, 1498
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	720, 1482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 980, 1099, 1148
HpyF3I	CTNAG	8 cut(s)	40, 219, 984, 1107, 1452, 1827, 1923, 1983
HspAI	GCGC	1 cut(s)	658
KpnI	GGTACC	1 cut(s)	2039
Kzo9I	GATC	6 cut(s)	579, 1726, 2161, 2174, 2200, 2324
LmnI	GCTCC	6 cut(s)	31, 152, 1084, 1472, 1484, 1555
Lsp1109I	GCAGC	5 cut(s)	192, 1077, 1099, 1451, 1991
LweI	GCATC	6 cut(s)	96, 912, 1504, 1516, 1841, 2146
MaeI	CTAG	2 cut(s)	237, 1788
MaeIII	GTNAC	6 cut(s)	176, 642, 1023, 1321, 1616, 2233
MalI	GATC	6 cut(s)	581, 1728, 2163, 2176, 2202, 2326
MbiI	CCGCTC	1 cut(s)	531
MboI	GATC	6 cut(s)	579, 1726, 2161, 2174, 2200, 2324
MboII	GAAGA	7 cut(s)	242, 356, 614, 905, 1444, 1790, 2132
MflI	RGATCY	1 cut(s)	2161
MhlI	GDGCHC	7 cut(s)	149, 220, 763, 990, 1009, 1627, 2076
MlsI	TGGCCA	1 cut(s)	475
MluNI	TGGCCA	1 cut(s)	475
MlyI	GAGTC	4 cut(s)	56, 964, 1855, 1936
MmeI	TCCRAC	6 cut(s)	9, 114, 227, 307, 872, 2036
Mox20I	TGGCCA	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	475
MslI	CAYNNNNRTG	3 cut(s)	191, 357, 929
Msp20I	TGGCCA	1 cut(s)	475
MspA1I	CMGCKG	3 cut(s)	205, 1090, 1982
MspCI	CTTAAG	1 cut(s)	1271
MspI	CCGG	3 cut(s)	73, 439, 917
MspR9I	CCNGG	3 cut(s)	1153, 1236, 1504
Mva1269I	GAATGC	2 cut(s)	84, 840
MvaI	CCWGG	3 cut(s)	1153, 1236, 1504
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	4 cut(s)	69, 980, 1099, 1148
NdeI	CATATG	3 cut(s)	547, 930, 1357
NdeII	GATC	6 cut(s)	579, 1726, 2161, 2174, 2200, 2324
NlaIV	GGNNCC	3 cut(s)	1557, 2037, 2110
NmeAIII	GCCGAG	1 cut(s)	1213
NmuCI	GTSAC	1 cut(s)	176
NsbI	TGCGCA	1 cut(s)	659
NspI	RCATGY	3 cut(s)	493, 1659, 2290
PaeR7I	CTCGAG	1 cut(s)	878
PagI	TCATGA	2 cut(s)	90, 2079
PceI	AGGCCT	1 cut(s)	876
PctI	GAATGC	2 cut(s)	84, 840
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	8 cut(s)	183, 233, 349, 666, 751, 786, 854, 1415
PflMI	CCANNNNNTGG	2 cut(s)	1645, 2171
PkrI	GCNGC	5 cut(s)	207, 1089, 1092, 1466, 1981
PleI	GAGTC	4 cut(s)	55, 963, 1854, 1935
PpsI	GAGTC	4 cut(s)	55, 963, 1854, 1935
PshBI	ATTAAT	1 cut(s)	1215
PsiI	TTATAA	1 cut(s)	1590
Psp124BI	GAGCTC	1 cut(s)	990
Psp6I	CCWGG	3 cut(s)	1151, 1234, 1502
PspFI	CCCAGC	1 cut(s)	1683
PspGI	CCWGG	3 cut(s)	1151, 1234, 1502
PspN4I	GGNNCC	3 cut(s)	1557, 2037, 2110
PspPI	GGNCC	1 cut(s)	169
PspXI	VCTCGAGB	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	945
PsuI	RGATCY	1 cut(s)	2161
PvuII	CAGCTG	3 cut(s)	205, 1090, 1982
RsaI	GTAC	2 cut(s)	2037, 2285
RsaNI	GTAC	2 cut(s)	2036, 2284
RseI	CAYNNNNRTG	3 cut(s)	191, 357, 929
SacI	GAGCTC	1 cut(s)	990
SatI	GCNGC	5 cut(s)	206, 1088, 1091, 1465, 1980
Sau3AI	GATC	6 cut(s)	579, 1726, 2161, 2174, 2200, 2324
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	4 cut(s)	56, 964, 1855, 1936
ScrFI	CCNGG	3 cut(s)	1153, 1236, 1504
SduI	GDGCHC	7 cut(s)	149, 220, 763, 990, 1009, 1627, 2076
SfaNI	GCATC	6 cut(s)	96, 912, 1504, 1516, 1841, 2146
SfcI	CTRYAG	2 cut(s)	826, 941
SfiI	GGCCNNNNNGGCC	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	878
SinI	GGWCC	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	878
SmiMI	CAYNNNNRTG	3 cut(s)	191, 357, 929
SmlI	CTYRAG	5 cut(s)	338, 389, 878, 989, 1271
SmoI	CTYRAG	5 cut(s)	338, 389, 878, 989, 1271
SseBI	AGGCCT	1 cut(s)	876
SsiI	CCGC	3 cut(s)	529, 572, 1553
SspI	AATATT	1 cut(s)	1510
SspMI	CTAG	2 cut(s)	237, 1788
SstI	GAGCTC	1 cut(s)	990
StuI	AGGCCT	1 cut(s)	876
StyD4I	CCNGG	3 cut(s)	1151, 1234, 1502
StyI	CCWWGG	3 cut(s)	511, 975, 2187
TaqI	TCGA	8 cut(s)	8, 832, 879, 1803, 1866, 1930, 2006, 2323
TaqII	GACCGA	2 cut(s)	157, 195
TfiI	GAWTC	8 cut(s)	183, 233, 349, 666, 751, 786, 854, 1415
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	5 cut(s)	205, 1087, 1090, 1464, 1979
Tsp45I	GTSAC	1 cut(s)	176
Van91I	CCANNNNNTGG	2 cut(s)	1645, 2171
Vha464I	CTTAAG	1 cut(s)	1271
VpaK11BI	GGWCC	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	1215
XagI	CCTNNNNNAGG	1 cut(s)	1774
XapI	RAATTY	5 cut(s)	268, 720, 909, 1345, 1852
XceI	RCATGY	3 cut(s)	493, 1659, 2290
XcmI	CCANNNNNNNNNTGG	2 cut(s)	290, 2194
XhoI	CTCGAG	1 cut(s)	878
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	237, 1788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.