Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006310

Physical Location & Seq

Genomic Coordinates Reverse (-)

56232376 .. 56243713

Gene Structure 11338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG414700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAACTTTTTCATAATGTTCTGACATCTACTGAGCTGCGGTTTCCACAAGGTGCTTTGGAAGAATTGCATCCAGATTGTGTAGATCTCTGCAGAAGCCTTTTGCGTCTAAATCCAGTTGAGCGACTGTCGTTTCAGGAGTTCTTCAATCACAAGTTTCTCAGAGAAGTGAGGGTGATGGTGGAAGTTGAACACACTTCACCACTTAAATCAACGGGTGAACAGCCTAGTTCTTCTGGCTCCAATACGATGTTGCAATTGCATGCCAGGCATCCCATCAACTCCTCTATTGGAAATCTGAGTTTAGATTCAGCTGCACATATTAAAGGTCTTGTGCCAGATTTTTCATGTGATAAGCCGAGGAAATCTGTTAATCAAGATCCAAACTTACAGGATCAGCTCCGAGTTTCGGATTCAATGGAGTCCATTGAAAAAGATTACGTAATGGTTAATTCTCATTTTGCATCGATGGAGAGTTTCTCATATTACCTTGAACACTCCCTGCAACTTGATTCCACAACTAGAGCTTCTATCTGTGCTTCAAAGCAGAAAGATCATGGTATACCACGTGTCATCAAAACAGAGGAGCTGGCAGCTGGTTCTCTTGGTGGGGGAAGTTCACAAACTCAAGGATCAGTTATAGAACCGGCATCTTGTGCATCGACTCTGTTACTGGAAGTGCAAGGACTGTCTATATTGCATCCTTCGACCAGGCTCCATCTGTTACATCAGCATGCTCAGGTCCTTGCTGATCTTTCTCAGGAAAAGTACAATGCAGGACTGTATCTAGAGTCATTTTCAGTTGAACTAGTTGTTTTGGCCATATGGAAGAAAGCTCTTCAAATTTGCAGCAGTTGGCTGGCATCAATTGAAAAGGATGAACCCGAAAGCAGTTCAGCAAATGCATCCTCAGTTGTTCAGGGTGGCTTGTCACTAAACAATTCAGAAAATGTAGACTTTACTAGGCCTTCATCTGTTTCAGTTTGGGCTGAGCAAGGTTTCCTAGTTGCATTTGATCGCGCAGAGAAGTTATCCTATCATGTCCAAGATATGGATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04139 ko04140 ko04150 ko04212 map04136 map04138 map04139 map04140 map04150 map04212

Pfam Domains

Protein Families

Pkinase

Protein Analysis

353

Amino Acids

38.98

Weight (kDa)

5.35

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIT_ATG1	PF24497	223 - 349	2.4e-46	ATG1, MIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61960 AT3G61960
fragaria_vesca	FvH4_7g17860 FvH4_7g17860 FvH4_7g17860 FvH4_7g17860 FvH4_7g17860
malus_domestica	MD01G1091000.v1.1 MD07G1161200.v1.1
prunus_persica	Prupe.2G200500_v2.0.a1 Prupe.2G200500_v2.0.a1 Prupe.2G200500_v2.0.a1 Prupe.2G200500_v2.0.a1 Prupe.2G200500_v2.0.a1 Prupe.2G200500_v2.0.a1
pyrus_communis	pycom01g11510
rosa_chinensis	RchiOBHm_Chr1g0361311
rosa_laevigata	RLG00000027726
rosa_multiflora	Rmu_sc0002119.1_g000030
rosa_roxburghii	Rroxscaffold_4G00295060
rosa_rugosa	Rorug01G0288200
rosa_samantha	Rh1AG299400 Rh1BG263200 Rh1CG280700 Rh1DG293300 Rh4BG414700
rosa_wichuraiana	Rw1G026490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1051
AccI	GTMKAC	2 cut(s)	562, 954
AccII	CGCG	1 cut(s)	1020
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	3 cut(s)	374, 402, 640
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	843
AcvI	CACGTG	1 cut(s)	569
AdeI	CACNNNGTG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	770
AfiI	CCNNNNNNNGG	2 cut(s)	409, 1051
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	9 cut(s)	148, 191, 417, 431, 494, 543, 806, 842, 872
AhlI	ACTAGT	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	266, 710
AluBI	AGCT	7 cut(s)	37, 314, 400, 527, 589, 596, 836
AluI	AGCT	7 cut(s)	37, 314, 400, 527, 589, 596, 836
AlwI	GGATC	3 cut(s)	374, 402, 640
AoxI	GGCC	2 cut(s)	819, 965
ApeKI	GCWGC	4 cut(s)	37, 314, 593, 849
ApoI	RAATTY	1 cut(s)	843
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	1022
AspS9I	GGNCC	1 cut(s)	742
AsuHPI	GGTGA	3 cut(s)	187, 192, 230
AvaII	GGWCC	1 cut(s)	742
BalI	TGGCCA	1 cut(s)	821
BbrPI	CACGTG	1 cut(s)	569
BbvI	GCAGC	4 cut(s)	24, 301, 605, 861
BccI	CCATC	5 cut(s)	172, 284, 463, 726, 1049
BciT130I	CCWGG	2 cut(s)	268, 712
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	6 cut(s)	228, 522, 788, 809, 963, 1004
BfmI	CTRYAG	1 cut(s)	91
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	4 cut(s)	38, 315, 594, 850
BlpI	GCTNAGC	1 cut(s)	990
BlsI	GCNGC	4 cut(s)	39, 316, 595, 851
Bme1390I	CCNGG	2 cut(s)	268, 712
Bme18I	GGWCC	1 cut(s)	742
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	2 cut(s)	241, 716
BmrFI	CCNGG	2 cut(s)	268, 712
BmsI	GCATC	8 cut(s)	79, 280, 473, 659, 668, 709, 872, 914
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
Bpu10I	CCTNAGC	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	990
BpuEI	CTTGAG	1 cut(s)	612
Bsa29I	ATCGAT	1 cut(s)	467
BsaAI	YACGTR	2 cut(s)	442, 569
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 1051
Bse118I	RCCGGY	1 cut(s)	646
Bse1I	ACTGG	2 cut(s)	116, 678
BseBI	CCWGG	2 cut(s)	268, 712
BseCI	ATCGAT	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	6 cut(s)	70, 271, 700, 883, 905, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	409, 1051
BseMII	CTCAG	7 cut(s)	24, 175, 290, 752, 773, 924, 981
BseNI	ACTGG	2 cut(s)	116, 678
BseRI	GAGGAG	2 cut(s)	274, 599
BseXI	GCAGC	4 cut(s)	24, 301, 605, 861
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	1020
BshFI	GGCC	2 cut(s)	821, 967
BshVI	ATCGAT	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	647
BslI	CCNNNNNNNGG	2 cut(s)	409, 1051
BsnI	GGCC	2 cut(s)	821, 967
Bsp143I	GATC	7 cut(s)	85, 379, 394, 553, 632, 751, 1015
Bsp1720I	GCTNAGC	1 cut(s)	990
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	2 cut(s)	821, 967
BspCNI	CTCAG	7 cut(s)	25, 174, 291, 751, 772, 923, 982
BspDI	ATCGAT	1 cut(s)	467
BspFNI	CGCG	1 cut(s)	1020
BspLI	GGNNCC	2 cut(s)	241, 716
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	3 cut(s)	374, 402, 640
BspQI	GCTCTTC	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	116, 678
BssAI	RCCGGY	1 cut(s)	646
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	7 cut(s)	85, 379, 394, 553, 632, 751, 1015
BssNAI	GTATAC	1 cut(s)	563
Bst1107I	GTATAC	1 cut(s)	563
Bst2UI	CCWGG	2 cut(s)	268, 712
Bst4CI	ACNGT	3 cut(s)	129, 690, 783
Bst6I	CTCTTC	1 cut(s)	843
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstBAI	YACGTR	2 cut(s)	442, 569
BstC8I	GCNNGC	4 cut(s)	264, 591, 735, 861
BstDEI	CTNAG	7 cut(s)	33, 161, 299, 738, 759, 910, 990
BstF5I	GGATG	6 cut(s)	70, 271, 700, 883, 905, 1060
BstFNI	CGCG	1 cut(s)	1020
BstHHI	GCGC	1 cut(s)	1022
BstKTI	GATC	7 cut(s)	88, 382, 397, 556, 635, 754, 1018
BstMBI	GATC	7 cut(s)	85, 379, 394, 553, 632, 751, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 656
BstNI	CCWGG	2 cut(s)	268, 712
BstNSI	RCATGY	2 cut(s)	266, 737
BstSCI	CCNGG	2 cut(s)	266, 710
BstSFI	CTRYAG	1 cut(s)	91
BstSNI	TACGTA	1 cut(s)	442
BstUI	CGCG	1 cut(s)	1020
BstV1I	GCAGC	4 cut(s)	24, 301, 605, 861
BstX2I	RGATCY	2 cut(s)	85, 379
BstYI	RGATCY	2 cut(s)	85, 379
BstZ17I	GTATAC	1 cut(s)	563
Bsu15I	ATCGAT	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	821, 967
BsuTUI	ATCGAT	1 cut(s)	467
BtsCI	GGATG	6 cut(s)	70, 271, 700, 883, 905, 1060
Cac8I	GCNNGC	4 cut(s)	264, 591, 735, 861
CfoI	GCGC	1 cut(s)	1022
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	742
ClaI	ATCGAT	1 cut(s)	467
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	769
CviAII	CATG	5 cut(s)	263, 348, 557, 734, 1040
CviQI	GTAC	1 cut(s)	769
DdeI	CTNAG	7 cut(s)	33, 161, 299, 738, 759, 910, 990
DpnI	GATC	7 cut(s)	87, 381, 396, 555, 634, 753, 1017
DpnII	GATC	7 cut(s)	85, 379, 394, 553, 632, 751, 1015
DraIII	CACNNNGTG	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	819
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Eco105I	TACGTA	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	742
Eco72I	CACGTG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	742
EcoRII	CCWGG	2 cut(s)	266, 710
EcoT22I	ATGCAT	1 cut(s)	907
FaeI	CATG	5 cut(s)	266, 351, 560, 737, 1043
FatI	CATG	5 cut(s)	262, 347, 556, 733, 1039
FauNDI	CATATG	1 cut(s)	824
FblI	GTMKAC	2 cut(s)	562, 954
Fnu4HI	GCNGC	4 cut(s)	38, 315, 594, 850
FokI	GGATG	5 cut(s)	57, 258, 687, 890, 892
Fsp4HI	GCNGC	4 cut(s)	38, 315, 594, 850
FspBI	CTAG	6 cut(s)	228, 522, 788, 809, 963, 1004
GlaI	GCGC	1 cut(s)	1021
GluI	GCNGC	4 cut(s)	38, 315, 594, 850
HaeIII	GGCC	2 cut(s)	821, 967
HapII	CCGG	1 cut(s)	647
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	1022
Hin1II	CATG	5 cut(s)	266, 351, 560, 737, 1043
Hin6I	GCGC	1 cut(s)	1020
HinP1I	GCGC	1 cut(s)	1020
HinfI	GANTC	6 cut(s)	308, 413, 422, 512, 664, 791
HpaII	CCGG	1 cut(s)	647
HphI	GGTGA	3 cut(s)	187, 192, 230
Hpy166II	GTNNAC	4 cut(s)	221, 563, 620, 955
Hpy188I	TCNGA	6 cut(s)	24, 164, 300, 404, 412, 946
Hpy188III	TCNNGA	5 cut(s)	74, 137, 377, 761, 788
Hpy8I	GTNNAC	4 cut(s)	221, 563, 620, 955
HpyAV	CCTTC	2 cut(s)	714, 978
HpyCH4III	ACNGT	3 cut(s)	129, 690, 783
HpyCH4IV	ACGT	2 cut(s)	441, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 656
HpyF3I	CTNAG	7 cut(s)	33, 161, 299, 738, 759, 910, 990
HpySE526I	ACGT	2 cut(s)	441, 568
Hsp92II	CATG	5 cut(s)	266, 351, 560, 737, 1043
HspAI	GCGC	1 cut(s)	1020
Kzo9I	GATC	7 cut(s)	85, 379, 394, 553, 632, 751, 1015
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	4 cut(s)	245, 405, 586, 720
Lsp1109I	GCAGC	4 cut(s)	24, 301, 605, 861
LweI	GCATC	8 cut(s)	79, 280, 473, 659, 668, 709, 872, 914
MaeI	CTAG	6 cut(s)	228, 522, 788, 809, 963, 1004
MaeII	ACGT	2 cut(s)	441, 568
MaeIII	GTNAC	3 cut(s)	669, 723, 930
MalI	GATC	7 cut(s)	87, 381, 396, 555, 634, 753, 1017
MboI	GATC	7 cut(s)	85, 379, 394, 553, 632, 751, 1015
MboII	GAAGA	5 cut(s)	74, 136, 225, 830, 841
MfeI	CAATTG	2 cut(s)	257, 867
MflI	RGATCY	2 cut(s)	85, 379
MlsI	TGGCCA	1 cut(s)	821
MluCI	AATT	6 cut(s)	65, 257, 451, 843, 867, 940
MluNI	TGGCCA	1 cut(s)	821
MlyI	GAGTC	3 cut(s)	431, 658, 800
MnlI	CCTC	5 cut(s)	165, 295, 354, 577, 919
Mox20I	TGGCCA	1 cut(s)	821
Mph1103I	ATGCAT	1 cut(s)	907
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	821
MseI	TTAA	4 cut(s)	207, 324, 372, 450
MslI	CAYNNNNRTG	1 cut(s)	732
Msp20I	TGGCCA	1 cut(s)	821
MspA1I	CMGCKG	2 cut(s)	314, 596
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	2 cut(s)	268, 712
MunI	CAATTG	2 cut(s)	257, 867
MvaI	CCWGG	2 cut(s)	268, 712
MvnI	CGCG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	2 cut(s)	268, 656
NdeI	CATATG	1 cut(s)	824
NdeII	GATC	7 cut(s)	85, 379, 394, 553, 632, 751, 1015
NlaIII	CATG	5 cut(s)	266, 351, 560, 737, 1043
NlaIV	GGNNCC	2 cut(s)	241, 716
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	930
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	2 cut(s)	266, 737
PaeI	GCATGC	2 cut(s)	266, 737
PceI	AGGCCT	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	843
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	3 cut(s)	308, 413, 512
PflMI	CCANNNNNTGG	1 cut(s)	1051
PkrI	GCNGC	4 cut(s)	39, 316, 595, 851
PleI	GAGTC	3 cut(s)	430, 658, 799
PmaCI	CACGTG	1 cut(s)	569
PmlI	CACGTG	1 cut(s)	569
PpsI	GAGTC	3 cut(s)	430, 658, 799
Ppu21I	YACGTR	2 cut(s)	442, 569
PpuMI	RGGWCCY	1 cut(s)	742
Psp5II	RGGWCCY	1 cut(s)	742
Psp6I	CCWGG	2 cut(s)	266, 710
PspCI	CACGTG	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	266, 710
PspN4I	GGNNCC	2 cut(s)	241, 716
PspPI	GGNCC	1 cut(s)	742
PspPPI	RGGWCCY	1 cut(s)	742
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	85, 379
PvuII	CAGCTG	2 cut(s)	314, 596
RsaI	GTAC	1 cut(s)	770
RsaNI	GTAC	1 cut(s)	769
RseI	CAYNNNNRTG	1 cut(s)	732
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	4 cut(s)	207, 324, 372, 450
SatI	GCNGC	4 cut(s)	38, 315, 594, 850
Sau3AI	GATC	7 cut(s)	85, 379, 394, 553, 632, 751, 1015
Sau96I	GGNCC	1 cut(s)	742
SchI	GAGTC	3 cut(s)	431, 658, 800
ScrFI	CCNGG	2 cut(s)	268, 712
SfaNI	GCATC	8 cut(s)	79, 280, 473, 659, 668, 709, 872, 914
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	627
SmoI	CTYRAG	1 cut(s)	627
SnaBI	TACGTA	1 cut(s)	442
SpeI	ACTAGT	1 cut(s)	808
SphI	GCATGC	2 cut(s)	266, 737
Sse9I	AATT	6 cut(s)	65, 257, 451, 843, 867, 940
SseBI	AGGCCT	1 cut(s)	967
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	6 cut(s)	228, 522, 788, 809, 963, 1004
StuI	AGGCCT	1 cut(s)	967
StyD4I	CCNGG	2 cut(s)	266, 710
TaaI	ACNGT	3 cut(s)	129, 690, 783
TaiI	ACGT	2 cut(s)	444, 571
TaqI	TCGA	3 cut(s)	467, 662, 707
TasI	AATT	6 cut(s)	65, 257, 451, 843, 867, 940
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	3 cut(s)	308, 413, 512
Tru1I	TTAA	4 cut(s)	207, 324, 372, 450
Tru9I	TTAA	4 cut(s)	207, 324, 372, 450
TseFI	GTSAC	1 cut(s)	930
TseI	GCWGC	4 cut(s)	37, 314, 593, 849
Tsp45I	GTSAC	1 cut(s)	930
TspDTI	ATGAA	3 cut(s)	336, 894, 960
Van91I	CCANNNNNTGG	1 cut(s)	1051
VpaK11BI	GGWCC	1 cut(s)	742
XapI	RAATTY	1 cut(s)	843
XbaI	TCTAGA	1 cut(s)	787
XceI	RCATGY	2 cut(s)	266, 737
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1052
XmiI	GTMKAC	2 cut(s)	562, 954
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	6 cut(s)	228, 522, 788, 809, 963, 1004
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.