Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018020

Physical Location & Seq

Genomic Coordinates Forward (+)

11355368 .. 11357887

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAGGGACAAAATTACAAAATGCAAAGTGTTAGTAAAGTACTCGGTCCAAATTGCTAATACGAAAACTACTGAGATAATAGTTGGTCTGCAGAGTCGACTCGTCTCGGACACGCTTCTACAGCGGACTGTGGGTCTCATCGTCTCCCTCCCTGAGAACACACCCCTCTGTCCTCACTCACACCATTCTTTCTCCATTTCAAGTTGGGGTTTCCTCCATTGCCAGGTAGTCTGCAGATTGATCAGACTCATTTCATCCATGGAGACCTACACCTCTCCTATCAAGTTGAAGCTCATGACAGACCCGCTGCGTCAAAATGTTTTGTTTGCTGAAGTGGGCAAGGATTTTGTGGATTTTCTATTCACTCTTCTGCCTTTGCCTATTGGCACAATCATTGGCTTACTCAAAGAAGAACATGGAATGGTTGGTTGCTTAGGAAAACTCTACAACAGTGTTCAAAATCTCAGTAGCACATACTTGCTAAACCCTGATCTTGACAGAGATGTACTGCTAAATCCTATGTCACCAGCTGATACTGCTGATATTTTGAACTTGTTGACCCAAGAGGAAGGTACTGATGATGAATCCAGTCACGATGAATGGAATGATGACAATGAATCAAGCGACACGCAATCAAGTGATGACAATGAATCAAATGATAATAGTGACTTCTATATATGTGTGTCCTGTTTGGGCAAGAGCAATGCCAAAGAACGGGTATACTATGTCACGGATAACTCTAAATCCATTTGTCCAGTGTGCAAAGCAATAATGTCGACCCCAGCGACTTATGTTGCTCCACCGCTTACTGAGGATGAAGTATCATTCCGCGAGGGATCGTACGTGAAAGATGTTGTTACTTATATTGTAATGGATGATTTGGAAGTGAGGCCCATGTCTGCCACTTTGATTATGGCTATGTTAAAAAAATTCAATGTTAAGGATGTCAGTAGCCTTATAGAGAAGGTGGTTCATCTTGGCAACGAAGAGGGTCTGAAGTTGCTTAAGGCGTCCCTGCAGTCAGAGTCAGCTCTCAGCACTGCCTTCCTTGTAGGGAAAGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

355

Amino Acids

39.36

Weight (kDa)

4.87

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	94 - 178	8.1e-20	Protein of unknown function (DUF674)
DUF674	PF05056	219 - 352	3.4e-16	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018020)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g04230
rosa_chinensis	RchiOBHm_Chr4g0394711
rosa_laevigata	RLG00000009669
rosa_multiflora	Rmu_sc0005356.1_g000017
rosa_roxburghii	Rroxscaffold_5G00339730
rosa_rugosa	Rorug03G0362300.1 Rorug03G0362400.1
rosa_samantha	Rh4AG054600 Rh4CG059100 Rh4DG050800
rosa_wichuraiana	Rw4G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	97, 720, 776
AccII	CGCG	1 cut(s)	831
AciI	CCGC	4 cut(s)	124, 305, 803, 829
AclWI	GGATC	1 cut(s)	844
AcsI	RAATTY	1 cut(s)	929
AcuI	CTGAAG	2 cut(s)	351, 1016
AcyI	GRCGYC	1 cut(s)	1010
AfaI	GTAC	4 cut(s)	41, 507, 574, 842
AfiI	CCNNNNNNNGG	2 cut(s)	223, 714
AflII	CTTAAG	1 cut(s)	1004
AgsI	TTSAA	5 cut(s)	201, 289, 458, 550, 934
AhdI	GACNNNNNGTC	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	3 cut(s)	292, 530, 1031
AluI	AGCT	3 cut(s)	292, 530, 1031
Alw26I	GTCTC	4 cut(s)	109, 140, 148, 257
AlwI	GGATC	1 cut(s)	844
AoxI	GGCC	1 cut(s)	890
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	929
AspS9I	GGNCC	2 cut(s)	46, 891
AsuHPI	GGTGA	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	756, 790
BciT130I	CCWGG	1 cut(s)	224
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	4 cut(s)	109, 140, 148, 257
BfmI	CTRYAG	4 cut(s)	89, 119, 232, 1016
BfrI	CTTAAG	1 cut(s)	1004
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	46
BmeRI	GACNNNNNGTC	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	46, 891
BmrFI	CCNGG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	844
BsaHI	GRCGYC	1 cut(s)	1010
BsaI	GGTCTC	2 cut(s)	140, 257
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 714
Bse1I	ACTGG	2 cut(s)	588, 755
Bse3DI	GCAATG	2 cut(s)	217, 709
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	4 cut(s)	254, 820, 880, 949
BseLI	CCNNNNNNNGG	2 cut(s)	223, 714
BseMI	GCAATG	2 cut(s)	217, 709
BseMII	CTCAG	5 cut(s)	63, 144, 478, 801, 1048
BseNI	ACTGG	2 cut(s)	588, 755
BseXI	GCAGC	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	831
BshFI	GGCC	1 cut(s)	892
BsiWI	CGTACG	1 cut(s)	840
BslFI	GGGAC	2 cut(s)	20, 997
BslI	CCNNNNNNNGG	2 cut(s)	223, 714
BsmAI	GTCTC	4 cut(s)	109, 140, 148, 257
BsmBI	CGTCTC	2 cut(s)	109, 148
BsmFI	GGGAC	2 cut(s)	20, 997
BsnI	GGCC	1 cut(s)	892
Bso31I	GGTCTC	2 cut(s)	140, 257
Bsp143I	GATC	3 cut(s)	240, 490, 836
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	4 cut(s)	124, 305, 803, 829
BspANI	GGCC	1 cut(s)	892
BspCNI	CTCAG	5 cut(s)	64, 145, 477, 802, 1047
BspFNI	CGCG	1 cut(s)	831
BspHI	TCATGA	1 cut(s)	294
BspMAI	CTGCAG	3 cut(s)	93, 236, 1020
BspPI	GGATC	1 cut(s)	844
BspTI	CTTAAG	1 cut(s)	1004
BspTNI	GGTCTC	2 cut(s)	140, 257
BsrDI	GCAATG	2 cut(s)	217, 709
BsrI	ACTGG	2 cut(s)	588, 755
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	240, 490, 836
BssNAI	GTATAC	1 cut(s)	721
BssNI	GRCGYC	1 cut(s)	1010
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	130, 452
Bst6I	CTCTTC	2 cut(s)	372, 981
BstACI	GRCGYC	1 cut(s)	1010
BstAFI	CTTAAG	1 cut(s)	1004
BstBAI	YACGTR	1 cut(s)	844
BstDEI	CTNAG	6 cut(s)	72, 153, 433, 464, 810, 1034
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	4 cut(s)	254, 820, 880, 949
BstFNI	CGCG	1 cut(s)	831
BstKTI	GATC	3 cut(s)	243, 493, 839
BstMAI	GTCTC	4 cut(s)	109, 140, 148, 257
BstMBI	GATC	3 cut(s)	240, 490, 836
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 536
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	4 cut(s)	89, 119, 232, 1016
BstUI	CGCG	1 cut(s)	831
BstV1I	GCAGC	1 cut(s)	294
BstZ17I	GTATAC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	892
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	254, 820, 880, 949
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	3 cut(s)	457, 762, 1038
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	46, 891
CseI	GACGC	2 cut(s)	299, 999
Csp6I	GTAC	4 cut(s)	40, 506, 573, 841
CviAII	CATG	5 cut(s)	259, 295, 416, 895, 1065
CviJI	RGCY	7 cut(s)	292, 399, 530, 892, 917, 954, 1031
CviKI_1	RGCY	7 cut(s)	292, 399, 530, 892, 917, 954, 1031
CviQI	GTAC	4 cut(s)	40, 506, 573, 841
DdeI	CTNAG	6 cut(s)	72, 153, 433, 464, 810, 1034
DpnI	GATC	3 cut(s)	242, 492, 838
DpnII	GATC	3 cut(s)	240, 490, 836
DriI	GACNNNNNGTC	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	372, 981
Eam1105I	GACNNNNNGTC	1 cut(s)	132
EarI	CTCTTC	2 cut(s)	372, 981
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	2 cut(s)	140, 257
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	351, 1016
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	2 cut(s)	109, 148
FaeI	CATG	5 cut(s)	262, 298, 419, 898, 1068
FaqI	GGGAC	2 cut(s)	20, 997
FatI	CATG	5 cut(s)	258, 294, 415, 894, 1064
FauI	CCCGC	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	240
FblI	GTMKAC	3 cut(s)	97, 720, 776
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	4 cut(s)	241, 827, 887, 956
Fsp4HI	GCNGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	308
GsaI	CCCAGC	1 cut(s)	785
HaeIII	GGCC	1 cut(s)	892
HgaI	GACGC	2 cut(s)	299, 999
Hin1I	GRCGYC	1 cut(s)	1010
Hin1II	CATG	5 cut(s)	262, 298, 419, 898, 1068
HincII	GTYRAC	3 cut(s)	98, 558, 777
HindII	GTYRAC	3 cut(s)	98, 558, 777
HinfI	GANTC	7 cut(s)	94, 99, 246, 584, 617, 650, 1025
HphI	GGTGA	1 cut(s)	516
Hpy166II	GTNNAC	4 cut(s)	98, 558, 721, 777
Hpy188I	TCNGA	4 cut(s)	109, 245, 996, 1024
Hpy188III	TCNNGA	3 cut(s)	295, 494, 593
Hpy8I	GTNNAC	4 cut(s)	98, 558, 721, 777
HpyAV	CCTTC	3 cut(s)	563, 958, 1054
HpyCH4III	ACNGT	2 cut(s)	130, 452
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	5 cut(s)	24, 91, 234, 762, 1018
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 536
HpyF3I	CTNAG	6 cut(s)	72, 153, 433, 464, 810, 1034
HpySE526I	ACGT	1 cut(s)	843
Hsp92I	GRCGYC	1 cut(s)	1010
Hsp92II	CATG	5 cut(s)	262, 298, 419, 898, 1068
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	240, 490, 836
LmnI	GCTCC	1 cut(s)	802
Lsp1109I	GCAGC	1 cut(s)	294
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	5 cut(s)	522, 590, 665, 727, 856
MalI	GATC	3 cut(s)	242, 492, 838
MboI	GATC	3 cut(s)	240, 490, 836
MboII	GAAGA	3 cut(s)	359, 422, 998
MluCI	AATT	3 cut(s)	12, 51, 929
MlyI	GAGTC	4 cut(s)	93, 103, 240, 1034
MseI	TTAA	3 cut(s)	923, 939, 1005
MspA1I	CMGCKG	3 cut(s)	124, 307, 530
MspCI	CTTAAG	1 cut(s)	1004
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	831
MwoI	GCNNNNNNNGC	2 cut(s)	121, 536
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	240, 490, 836
NlaIII	CATG	5 cut(s)	262, 298, 419, 898, 1068
NmuCI	GTSAC	4 cut(s)	522, 590, 665, 727
PagI	TCATGA	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	782
PfeI	GAWTC	3 cut(s)	584, 617, 650
Pfl23II	CGTACG	1 cut(s)	840
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	4 cut(s)	93, 102, 240, 1033
PpsI	GAGTC	4 cut(s)	93, 102, 240, 1033
Ppu21I	YACGTR	1 cut(s)	844
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	222
PspLI	CGTACG	1 cut(s)	840
PspPI	GGNCC	2 cut(s)	46, 891
PstI	CTGCAG	3 cut(s)	93, 236, 1020
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	4 cut(s)	41, 507, 574, 842
RsaNI	GTAC	4 cut(s)	40, 506, 573, 841
SalI	GTCGAC	2 cut(s)	96, 775
SaqAI	TTAA	3 cut(s)	923, 939, 1005
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	3 cut(s)	240, 490, 836
Sau96I	GGNCC	2 cut(s)	46, 891
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	4 cut(s)	93, 103, 240, 1034
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	9 cut(s)	228, 269, 275, 294, 532, 574, 846, 969, 1033
SfcI	CTRYAG	4 cut(s)	89, 119, 232, 1016
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	3 cut(s)	12, 51, 929
SsiI	CCGC	4 cut(s)	124, 305, 803, 829
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	130, 452
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	2 cut(s)	97, 776
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	12, 51, 929
TatI	WGTACW	2 cut(s)	39, 505
TfiI	GAWTC	3 cut(s)	584, 617, 650
Tru1I	TTAA	3 cut(s)	923, 939, 1005
Tru9I	TTAA	3 cut(s)	923, 939, 1005
TscAI	CASTG	3 cut(s)	457, 762, 1045
TseFI	GTSAC	4 cut(s)	522, 590, 665, 727
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	4 cut(s)	522, 590, 665, 727
TspDTI	ATGAA	7 cut(s)	243, 597, 612, 630, 663, 831, 962
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	3 cut(s)	457, 762, 1045
Vha464I	CTTAAG	1 cut(s)	1004
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	910
XmiI	GTMKAC	3 cut(s)	97, 720, 776
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.