Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0021402

Physical Location & Seq

Genomic Coordinates Reverse (-)

35543218 .. 35543951

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG161800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCGCACCAAATGTGCTTCGACTGCCTCCAGCGCTGGATTGAGTCGGAGTTCTCCGACAAACTTGTCTTCATCCACGAACTCTTCGATTCCACTTTTCCGTTTGGCTCAAACGCCTTTGTTAAGTTGTCTAGTTCAAGTGGAGAAGCTGCTTCAGCTCCTCAATTTTTGCTCAAGTATCTAGCCAATCATCACTGTGATTGCTTGGCCAAATTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006950 GO:0006952 GO:0006955 GO:0007034 GO:0008104 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0015031 GO:0015833 GO:0031461 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042742 GO:0042886 GO:0043207 GO:0044424 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0098542 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Pkinase WD40

Protein Analysis

73

Amino Acids

8.29

Weight (kDa)

5.66

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021402)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426861 RchiOBHm_Chr6g0275911
rosa_laevigata	RLG00000008597
rosa_samantha	Rh4CG161800 Rh7DG282900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	138
AfeI	AGCGCT	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	138
AluBI	AGCT	2 cut(s)	149, 158
AluI	AGCT	2 cut(s)	149, 158
Aor51HI	AGCGCT	1 cut(s)	35
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	7, 36
BalI	TGGCCA	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	132, 182
BfoI	RGCGCY	1 cut(s)	37
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	2 cut(s)	7, 36
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 33, 155
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	193
CfoI	GCGC	2 cut(s)	7, 36
CviJI	RGCY	5 cut(s)	108, 149, 158, 185, 209
CviKI_1	RGCY	5 cut(s)	108, 149, 158, 185, 209
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	2 cut(s)	132, 182
GlaI	GCGC	2 cut(s)	6, 35
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	7, 36
Hin6I	GCGC	2 cut(s)	5, 34
HinP1I	GCGC	2 cut(s)	5, 34
HinfI	GANTC	2 cut(s)	44, 89
Hpy188I	TCNGA	2 cut(s)	49, 58
HpyCH4III	ACNGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 33, 155
HspAI	GCGC	2 cut(s)	5, 34
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	2 cut(s)	22, 44
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	132, 182
MboII	GAAGA	2 cut(s)	61, 76
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	164, 212
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	27, 81
MnlI	CCTC	2 cut(s)	38, 171
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	24, 33, 155
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	53
SetI	ASST	2 cut(s)	151, 160
SgeI	CNNG	9 cut(s)	43, 49, 77, 89, 144, 150, 187, 194, 217
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	164, 212
SspMI	CTAG	2 cut(s)	132, 182
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	21, 87
TasI	AATT	2 cut(s)	164, 212
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	212
XspI	CTAG	2 cut(s)	132, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.