Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0021402

Physical Location & Seq

Genomic Coordinates Forward (+)

30615826 .. 30620056

Gene Structure 4231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG282900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTGCTTCGACTGCCTCCAACGACGGATTGAGTCGGAGTTCTCCGGCAAACTCGTCTTCATCCATGGACTTTCCGATTCCACTTTTTCATTTGGCTCAAACATCGTCGTTCAGTTCGCAAGAAAGAGCTCTCCGACTTCCAGTAGAGTACTTGTTCCGGCCGTCGGAATCTCATCTCTCCGGTTCGCTCTCGCCACCGCCTTCCATTCTCTCAGGTTTGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006950 GO:0006952 GO:0006955 GO:0007034 GO:0008104 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0015031 GO:0015833 GO:0031461 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042742 GO:0042886 GO:0043207 GO:0044424 GO:0044464 GO:0045087 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0080008 GO:0098542 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Pkinase WD40

Protein Analysis

75

Amino Acids

8.36

Weight (kDa)

9.49

Isoelectric Point (pI)

68.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021402)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0426861 RchiOBHm_Chr6g0275911
rosa_laevigata	RLG00000008597
rosa_samantha	Rh4CG161800 Rh7DG282900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	159
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw21I	GWGCWC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	141
BseX3I	CGGCCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	161
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	45, 158, 181
BslI	CCNNNNNNNGG	1 cut(s)	164
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	60
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	3 cut(s)	96, 129, 161
CviKI_1	RGCY	3 cut(s)	96, 129, 161
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	129
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	131
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	68
FaiI	YATR	1 cut(s)	66
FatI	CATG	1 cut(s)	64
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	3 cut(s)	45, 158, 181
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	3 cut(s)	32, 77, 168
HpaII	CCGG	3 cut(s)	45, 158, 181
Hpy188I	TCNGA	4 cut(s)	37, 76, 135, 167
Hpy99I	CGWCG	3 cut(s)	27, 110, 167
HpyAV	CCTTC	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	58, 154, 171, 194, 199
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	4 cut(s)	15, 43, 145, 158
MnlI	CCTC	1 cut(s)	26
MspI	CCGG	3 cut(s)	45, 158, 181
MwoI	GCNNNNNNNGC	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	64
NlaIII	CATG	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	77, 168
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	131
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	150
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	2 cut(s)	131, 218
SgeI	CNNG	9 cut(s)	57, 65, 77, 132, 153, 164, 170, 193, 203
SsiI	CCGC	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	64
TaqI	TCGA	1 cut(s)	9
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	77, 168
TspDTI	ATGAA	2 cut(s)	49, 78
TspGWI	ACGGA	1 cut(s)	40
ZrmI	AGTACT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.