Rh5AG088400

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
7888586 .. 7892492
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG088400.1

Sequence Viewer

Length: 1260 bp
ATGAAAAAGAAGCTAGAGCTGCCTCTTGGGTTTTGCTTCTTCTACTTGTGCATCCCATTGGTCACAGCTTCTGACAGTTTGCTCTCCCCCAAAGGTGTCAACTTCGAAGTGGCTGCATTGATGTCAGTGAAGAAGGAGATGCAGGATGAGTTGCTTGTGATGGGTGGGTGGGATATCAACTCAGTTGATCCTTGCACTTGGAACATGGTGGGTTGTTCTGCTGAGGGATATGTAATCTCCGTTGCAATGGCCAGCTCGGGTTTATCCGGAATGCTTTCGCCAAGTATTGGGAATTTGAGTCATCTTCGGACATTGTTGTTACAAAACAATCAGTTGTCTGGTCCTATCCCAACTGAGATAGGGAGGCTTTCGCTGCTTGAAACTCTGGACCTTTCGGGTAACCAGTTTTCTGGAAACATTCCGAGTTCTTTGGGGTTTCTGACTCATCTAAGTTACTTGAGGCTTAATAGAAATAATTTGAGCGGTCAAATTCCTAGCCTTGTTGCTGATCTCACAGATCTTTCATTCTTGGATTTATCATTTAATAATCTTAGTGGGCCCACGCCAAAAATACTGGCGAAAGGCTACAGTGTGACAGGGAACAGCTTTCTTTGCAATCCTTTGTCAGCAGACTCAACACGAATCTGCGTGGATGTGTCAAAACCAGTAAACGACACAGGTTCACCACCGAAAGTCAGTGACCACCATCGATGGGTACTTTCTGTTGCTCTAGGCATTAGTTGTGCATTTGTTATTTCAGTGATGCTACTTGTTTGTTGGGTGCATTGGTACAGATCTCGTCTTCTATTTACATCTTATGTGCAGCAAGATTATGAATTAGATATAAGTCATCTAAAGAGGTTCTCCTATCGTGAATTACAACTTGCAACGAGCAATTTTAGTTCTAAAAACATCCTAGGACAAGGTGGATATGGAGTCGTTCGAACCTTACATGAGGAGAAGAGGCTGGAAGTGCTAGTAGACAGGGATCTAAAAGGATGTTTTGATGCAACTGAGCTTGAAACATGCGCAGAGTTGGCTCTGCAGTGTACTCAGTCAAGCCCCAACCTCCGGCCAAAGATGTCAGATGTCCTAAAGATCTTGGAAGGCCTTGTTGGGCAATCAGTACAAACAGAAGATCCACAAGGTGGCACCAACCCTTCTGAGGCCACGACTTGCAGTTTCTCCAGGGATTACAGCGATGTTCGGCAAGACTCTTCATTCATCATCGAAGCCATTGAGCTTTCTGGACCTCGGTAA

Protein Analysis

419

Amino Acids

45.85

Weight (kDa)

5.34

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 34 - 73 5.2e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 95 - 180 4.6e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023364)

Species Orthologous Gene IDs
rosa_samantha Rh5AG088400 Rh5BG083500 Rh5CG096700 Rh5DG083400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1030
AccB1I GGYRCC 1 cut(s) 1151
AccB7I CCANNNNNTGG 2 cut(s) 287, 1148
AccBSI CCGCTC 1 cut(s) 483
AccI GTMKAC 1 cut(s) 981
AccIII TCCGGA 1 cut(s) 266
AciI CCGC 1 cut(s) 483
AclWI GGATC 3 cut(s) 182, 996, 1133
AcoI YGGCCR 2 cut(s) 249, 1073
AcsI RAATTY 2 cut(s) 292, 489
AdeI CACNNNGTG 1 cut(s) 1148
AfaI GTAC 4 cut(s) 717, 791, 1051, 1128
AfiI CCNNNNNNNGG 5 cut(s) 287, 712, 1071, 1148, 1165
AgsI TTSAA 2 cut(s) 380, 1022
AjnI CCWGG 1 cut(s) 1187
AjuI GAANNNNNNNTTGG 2 cut(s) 1098, 1130
AluBI AGCT 7 cut(s) 13, 19, 68, 255, 606, 1018, 1243
AluI AGCT 7 cut(s) 13, 19, 68, 255, 606, 1018, 1243
AlwI GGATC 3 cut(s) 182, 996, 1133
AlwNI CAGNNNCTG 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 256
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 5 cut(s) 249, 557, 1073, 1108, 1167
ApaI GGGCCC 1 cut(s) 561
ApeKI GCWGC 4 cut(s) 19, 113, 373, 823
ApoI RAATTY 2 cut(s) 292, 489
Asp700I GAANNNNTTC 1 cut(s) 274
AspA2I CCTAGG 1 cut(s) 916
AspLEI GCGC 1 cut(s) 1031
AspS9I GGNCC 5 cut(s) 341, 388, 557, 558, 1250
AsuHPI GGTGA 1 cut(s) 675
AsuII TTCGAA 2 cut(s) 105, 943
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 3 cut(s) 341, 388, 1250
AvrII CCTAGG 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 561
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 1151
BanII GRGCYC 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 794
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 6, 100, 360, 835
BccI CCATC 3 cut(s) 154, 705, 714
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 1 cut(s) 1189
BfaI CTAG 5 cut(s) 14, 495, 731, 917, 977
BfmI CTRYAG 2 cut(s) 586, 1043
BglII AGATCT 3 cut(s) 517, 794, 1098
BisI GCNGC 4 cut(s) 20, 114, 374, 824
BlnI CCTAGG 1 cut(s) 916
BlsI GCNGC 4 cut(s) 21, 115, 375, 825
Bme1390I CCNGG 1 cut(s) 1189
Bme18I GGWCC 3 cut(s) 341, 388, 1250
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 5 cut(s) 341, 388, 557, 558, 1250
BmiI GGNNCC 2 cut(s) 559, 1153
BmrFI CCNGG 1 cut(s) 1189
BmsI GCATC 4 cut(s) 60, 129, 753, 997
BpiI GAAGAC 1 cut(s) 794
BpmI CTGGAG 1 cut(s) 1171
Bpu10I CCTNAGC 1 cut(s) 222
Bpu14I TTCGAA 2 cut(s) 105, 943
BpuEI CTTGAG 1 cut(s) 478
Bsa29I ATCGAT 1 cut(s) 709
BsaJI CCNNGG 3 cut(s) 916, 1188, 1253
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 5 cut(s) 287, 712, 1071, 1148, 1165
Bse1I ACTGG 3 cut(s) 403, 579, 665
Bse3DI GCAATG 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 266
BseBI CCWGG 1 cut(s) 1189
BseCI ATCGAT 1 cut(s) 709
BseDI CCNNGG 3 cut(s) 916, 1188, 1253
BseGI GGATG 5 cut(s) 51, 151, 658, 912, 1004
BseLI CCNNNNNNNGG 5 cut(s) 287, 712, 1071, 1148, 1165
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 6 cut(s) 195, 213, 345, 1005, 1067, 1155
BseNI ACTGG 3 cut(s) 403, 579, 665
BseRI GAGGAG 1 cut(s) 971
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 4 cut(s) 6, 100, 360, 835
BsgI GTGCAG 1 cut(s) 842
BshFI GGCC 5 cut(s) 251, 559, 1075, 1110, 1169
BshNI GGYRCC 1 cut(s) 1151
BshVI ATCGAT 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 267, 1072
BslI CCNNNNNNNGG 5 cut(s) 287, 712, 1071, 1148, 1165
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 5 cut(s) 251, 559, 1075, 1110, 1169
BsoBI CYCGRG 1 cut(s) 256
Bsp119I TTCGAA 2 cut(s) 105, 943
Bsp120I GGGCCC 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 561
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 7 cut(s) 187, 508, 517, 794, 988, 1098, 1138
BspACI CCGC 1 cut(s) 483
BspANI GGCC 5 cut(s) 251, 559, 1075, 1110, 1169
BspCNI CTCAG 6 cut(s) 194, 214, 346, 1006, 1066, 1156
BspDI ATCGAT 1 cut(s) 709
BspEI TCCGGA 1 cut(s) 266
BspLI GGNNCC 2 cut(s) 559, 1153
BspMAI CTGCAG 1 cut(s) 1047
BspPI GGATC 3 cut(s) 182, 996, 1133
BspT104I TTCGAA 2 cut(s) 105, 943
BspT107I GGYRCC 1 cut(s) 1151
BsrBI CCGCTC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 3 cut(s) 403, 579, 665
BssECI CCNNGG 3 cut(s) 916, 1188, 1253
BssMI GATC 7 cut(s) 187, 508, 517, 794, 988, 1098, 1138
BssT1I CCWWGG 1 cut(s) 916
Bst2UI CCWGG 1 cut(s) 1189
Bst4CI ACNGT 2 cut(s) 77, 590
Bst6I CTCTTC 2 cut(s) 956, 1222
BstBI TTCGAA 2 cut(s) 105, 943
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 8 cut(s) 181, 222, 354, 449, 551, 1014, 1053, 1164
BstEII GGTNACC 1 cut(s) 398
BstF5I GGATG 5 cut(s) 51, 151, 658, 912, 1004
BstHHI GCGC 1 cut(s) 1031
BstKTI GATC 7 cut(s) 190, 511, 520, 797, 991, 1101, 1141
BstMBI GATC 7 cut(s) 187, 508, 517, 794, 988, 1098, 1138
BstMWI GCNNNNNNNGC 5 cut(s) 19, 373, 612, 973, 1037
BstNI CCWGG 1 cut(s) 1189
BstNSI RCATGY 1 cut(s) 1029
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 1187
BstSFI CTRYAG 2 cut(s) 586, 1043
BstSLI GKGCMC 1 cut(s) 561
BstV1I GCAGC 4 cut(s) 6, 100, 360, 835
BstV2I GAAGAC 1 cut(s) 794
BstX2I RGATCY 5 cut(s) 517, 794, 988, 1098, 1138
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 5 cut(s) 517, 794, 988, 1098, 1138
Bsu15I ATCGAT 1 cut(s) 709
BsuRI GGCC 5 cut(s) 251, 559, 1075, 1110, 1169
BsuTUI ATCGAT 1 cut(s) 709
BtgZI GCGATG 1 cut(s) 1215
BtsCI GGATG 5 cut(s) 51, 151, 658, 912, 1004
BtsI GCAGTG 1 cut(s) 1052
BtsIMutI CAGTG 5 cut(s) 132, 595, 703, 765, 1052
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 1031
Cfr13I GGNCC 5 cut(s) 341, 388, 557, 558, 1250
ClaI ATCGAT 1 cut(s) 709
Csp6I GTAC 4 cut(s) 716, 790, 1050, 1127
CviAII CATG 3 cut(s) 205, 953, 1026
CviQI GTAC 4 cut(s) 716, 790, 1050, 1127
DdeI CTNAG 8 cut(s) 181, 222, 354, 449, 551, 1014, 1053, 1164
DpnI GATC 7 cut(s) 189, 510, 519, 796, 990, 1100, 1140
DpnII GATC 7 cut(s) 187, 508, 517, 794, 988, 1098, 1138
DraIII CACNNNGTG 1 cut(s) 1148
EaeI YGGCCR 2 cut(s) 249, 1073
Eam1104I CTCTTC 2 cut(s) 956, 1222
EarI CTCTTC 2 cut(s) 956, 1222
Eco130I CCWWGG 1 cut(s) 916
Eco147I AGGCCT 1 cut(s) 1110
Eco24I GRGCYC 1 cut(s) 561
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 3 cut(s) 341, 388, 1250
Eco88I CYCGRG 1 cut(s) 256
Eco91I GGTNACC 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 1187
EcoRV GATATC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 916
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 916
FaeI CATG 3 cut(s) 208, 956, 1029
FaiI YATR 8 cut(s) 206, 231, 819, 834, 845, 933, 954, 1027
FatI CATG 3 cut(s) 204, 952, 1025
FblI GTMKAC 1 cut(s) 981
Fnu4HI GCNGC 4 cut(s) 20, 114, 374, 824
FokI GGATG 5 cut(s) 38, 158, 665, 899, 1011
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 4 cut(s) 20, 114, 374, 824
FspBI CTAG 5 cut(s) 14, 495, 731, 917, 977
FspI TGCGCA 1 cut(s) 1030
GlaI GCGC 1 cut(s) 1030
GluI GCNGC 4 cut(s) 20, 114, 374, 824
GsuI CTGGAG 1 cut(s) 1171
HaeIII GGCC 5 cut(s) 251, 559, 1075, 1110, 1169
HapII CCGG 2 cut(s) 267, 1072
HhaI GCGC 1 cut(s) 1031
Hin1II CATG 3 cut(s) 208, 956, 1029
Hin6I GCGC 1 cut(s) 1029
HinP1I GCGC 1 cut(s) 1029
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 6 cut(s) 298, 442, 632, 642, 936, 1214
HpaII CCGG 2 cut(s) 267, 1072
HphI GGTGA 1 cut(s) 675
Hpy166II GTNNAC 5 cut(s) 100, 670, 683, 982, 1050
Hpy188I TCNGA 6 cut(s) 73, 309, 423, 441, 1087, 1165
Hpy188III TCNNGA 5 cut(s) 267, 386, 411, 872, 1248
Hpy8I GTNNAC 5 cut(s) 100, 670, 683, 982, 1050
HpyAV CCTTC 3 cut(s) 127, 1100, 1170
HpyCH4III ACNGT 2 cut(s) 77, 590
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 373, 612, 973, 1037
HpyF3I CTNAG 8 cut(s) 181, 222, 354, 449, 551, 1014, 1053, 1164
Hsp92II CATG 3 cut(s) 208, 956, 1029
HspAI GCGC 1 cut(s) 1029
Kpn2I TCCGGA 1 cut(s) 266
Kzo9I GATC 7 cut(s) 187, 508, 517, 794, 988, 1098, 1138
Lsp1109I GCAGC 4 cut(s) 6, 100, 360, 835
LweI GCATC 4 cut(s) 60, 129, 753, 997
MaeI CTAG 5 cut(s) 14, 495, 731, 917, 977
MaeIII GTNAC 6 cut(s) 61, 318, 398, 452, 592, 698
MalI GATC 7 cut(s) 189, 510, 519, 796, 990, 1100, 1140
MbiI CCGCTC 1 cut(s) 483
MboI GATC 7 cut(s) 187, 508, 517, 794, 988, 1098, 1138
MboII GAAGA 7 cut(s) 31, 142, 296, 794, 973, 1148, 1209
MflI RGATCY 5 cut(s) 517, 794, 988, 1098, 1138
MhlI GDGCHC 1 cut(s) 561
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 6 cut(s) 292, 475, 489, 836, 875, 895
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 5 cut(s) 307, 436, 626, 945, 1208
MnlI CCTC 9 cut(s) 33, 217, 357, 453, 852, 949, 957, 1079, 1159
Mox20I TGGCCA 1 cut(s) 251
MroI TCCGGA 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 274
MscI TGGCCA 1 cut(s) 251
MseI TTAA 2 cut(s) 465, 543
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 2 cut(s) 267, 1072
MspR9I CCNGG 1 cut(s) 1189
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 1 cut(s) 1189
MwoI GCNNNNNNNGC 5 cut(s) 19, 373, 612, 973, 1037
NdeII GATC 7 cut(s) 187, 508, 517, 794, 988, 1098, 1138
NlaIII CATG 3 cut(s) 208, 956, 1029
NlaIV GGNNCC 2 cut(s) 559, 1153
NmuCI GTSAC 3 cut(s) 61, 592, 698
NsbI TGCGCA 1 cut(s) 1030
NspI RCATGY 1 cut(s) 1029
NspV TTCGAA 2 cut(s) 105, 943
PceI AGGCCT 1 cut(s) 1110
PctI GAATGC 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 642
PflMI CCANNNNNTGG 2 cut(s) 287, 1148
PkrI GCNGC 4 cut(s) 21, 115, 375, 825
PleI GAGTC 5 cut(s) 306, 436, 626, 944, 1208
PpsI GAGTC 5 cut(s) 306, 436, 626, 944, 1208
Psp6I CCWGG 1 cut(s) 1187
PspEI GGTNACC 1 cut(s) 398
PspGI CCWGG 1 cut(s) 1187
PspN4I GGNNCC 2 cut(s) 559, 1153
PspOMI GGGCCC 1 cut(s) 557
PspPI GGNCC 5 cut(s) 341, 388, 557, 558, 1250
PstI CTGCAG 1 cut(s) 1047
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 5 cut(s) 517, 794, 988, 1098, 1138
RsaI GTAC 4 cut(s) 717, 791, 1051, 1128
RsaNI GTAC 4 cut(s) 716, 790, 1050, 1127
SaqAI TTAA 2 cut(s) 465, 543
SatI GCNGC 4 cut(s) 20, 114, 374, 824
Sau3AI GATC 7 cut(s) 187, 508, 517, 794, 988, 1098, 1138
Sau96I GGNCC 5 cut(s) 341, 388, 557, 558, 1250
SchI GAGTC 5 cut(s) 307, 436, 626, 945, 1208
ScrFI CCNGG 1 cut(s) 1189
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 4 cut(s) 60, 129, 753, 997
SfcI CTRYAG 2 cut(s) 586, 1043
SfuI TTCGAA 2 cut(s) 105, 943
SinI GGWCC 3 cut(s) 341, 388, 1250
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
Sse9I AATT 6 cut(s) 292, 475, 489, 836, 875, 895
SseBI AGGCCT 1 cut(s) 1110
SsiI CCGC 1 cut(s) 483
SspMI CTAG 5 cut(s) 14, 495, 731, 917, 977
StuI AGGCCT 1 cut(s) 1110
StyD4I CCNGG 1 cut(s) 1187
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 2 cut(s) 77, 590
TaqI TCGA 4 cut(s) 105, 709, 943, 1230
TasI AATT 6 cut(s) 292, 475, 489, 836, 875, 895
TatI WGTACW 2 cut(s) 1049, 1126
TfiI GAWTC 1 cut(s) 642
Tru1I TTAA 2 cut(s) 465, 543
Tru9I TTAA 2 cut(s) 465, 543
TscAI CASTG 5 cut(s) 132, 595, 703, 765, 1052
TseFI GTSAC 3 cut(s) 61, 592, 698
TseI GCWGC 4 cut(s) 19, 113, 373, 823
Tsp45I GTSAC 3 cut(s) 61, 592, 698
TspDTI ATGAA 5 cut(s) 17, 513, 849, 1209, 1213
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 5 cut(s) 132, 595, 703, 765, 1052
Van91I CCANNNNNTGG 2 cut(s) 287, 1148
VpaK11BI GGWCC 3 cut(s) 341, 388, 1250
XapI RAATTY 2 cut(s) 292, 489
XceI RCATGY 1 cut(s) 1029
XmaJI CCTAGG 1 cut(s) 916
XmiI GTMKAC 1 cut(s) 981
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 5 cut(s) 14, 495, 731, 917, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.