Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0023364

Physical Location & Seq

Genomic Coordinates Forward (+)

7225119 .. 7225445

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG083500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCAGGTTCGAACCTTACATGAGGAGAAGAGGCTGGAAGTGCTAGCAGACAGGGATCTAAAAGGATGTTTTGATGCAACCGAGCTTGAAACATGCGCAGAGTTGGCTCTGCAGTGTACTCAGTCAAGCCCCAACCTCCGGCCAAAGATGTCAGATGTCCTAAAGATCTTGGAAGGCCTTATTGAGCAATCAGTACAAACAGAAGATCCACAAGGTGGCACCAACCCTTCTGAGGCCAGGACTTGCAGTTTCTCCAGGGATTACAGCGATGTTCGGCAAGACTCTTCATTCATCATCGAAGCCATTGAGCTTTCTGGACCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

108

Amino Acids

12.07

Weight (kDa)

4.58

Isoelectric Point (pI)

73.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023364)

Species	Orthologous Gene IDs
rosa_samantha	Rh5AG088400 Rh5BG083500 Rh5CG096700 Rh5DG083400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	215
AclWI	GGATC	2 cut(s)	63, 200
AcoI	YGGCCR	1 cut(s)	140
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	118, 195
AfiI	CCNNNNNNNGG	3 cut(s)	138, 215, 232
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	2 cut(s)	236, 254
AluBI	AGCT	2 cut(s)	85, 310
AluI	AGCT	2 cut(s)	85, 310
AlwI	GGATC	2 cut(s)	63, 200
AoxI	GGCC	3 cut(s)	140, 175, 234
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	10
AsuNHI	GCTAGC	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	238, 256
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	238, 256
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	238, 256
BmsI	GCATC	1 cut(s)	64
BmtI	GCTAGC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	238
Bpu14I	TTCGAA	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	255, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 215, 232
BseBI	CCWGG	2 cut(s)	238, 256
BseDI	CCNNGG	2 cut(s)	255, 320
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	3 cut(s)	138, 215, 232
BseMII	CTCAG	2 cut(s)	134, 222
BseRI	GAGGAG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	142, 177, 236
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	138, 215, 232
BsnI	GGCC	3 cut(s)	142, 177, 236
Bsp119I	TTCGAA	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	55, 165, 205
BspANI	GGCC	3 cut(s)	142, 177, 236
BspCNI	CTCAG	2 cut(s)	133, 223
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	114
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	2 cut(s)	63, 200
BspT104I	TTCGAA	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	255, 320
BssMI	GATC	3 cut(s)	55, 165, 205
Bst2UI	CCWGG	2 cut(s)	238, 256
Bst6I	CTCTTC	2 cut(s)	23, 289
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	120, 231
BstF5I	GGATG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	3 cut(s)	58, 168, 208
BstMBI	GATC	3 cut(s)	55, 165, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 104
BstNI	CCWGG	2 cut(s)	238, 256
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	236, 254
BstSFI	CTRYAG	1 cut(s)	110
BstX2I	RGATCY	3 cut(s)	55, 165, 205
BstYI	RGATCY	3 cut(s)	55, 165, 205
BsuRI	GGCC	3 cut(s)	142, 177, 236
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	117, 194
CviAII	CATG	2 cut(s)	20, 93
CviJI	RGCY	9 cut(s)	34, 85, 107, 129, 142, 177, 236, 302, 310
CviKI_1	RGCY	9 cut(s)	34, 85, 107, 129, 142, 177, 236, 302, 310
CviQI	GTAC	2 cut(s)	117, 194
DdeI	CTNAG	2 cut(s)	120, 231
DpnI	GATC	3 cut(s)	57, 167, 207
DpnII	GATC	3 cut(s)	55, 165, 205
DraIII	CACNNNGTG	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	2 cut(s)	23, 289
EarI	CTCTTC	2 cut(s)	23, 289
Eco147I	AGGCCT	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	236, 254
FaeI	CATG	2 cut(s)	23, 96
FaiI	YATR	2 cut(s)	21, 94
FatI	CATG	2 cut(s)	19, 92
FokI	GGATG	1 cut(s)	78
FspBI	CTAG	1 cut(s)	44
FspI	TGCGCA	1 cut(s)	97
GlaI	GCGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	3 cut(s)	142, 177, 236
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	23, 96
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	154, 232
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	167, 237
HpyCH4V	TGCA	4 cut(s)	4, 77, 112, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 104
HpyF3I	CTNAG	2 cut(s)	120, 231
Hsp92II	CATG	2 cut(s)	23, 96
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	55, 165, 205
LpnPI	CCDG	8 cut(s)	20, 37, 152, 223, 241, 250, 268, 300
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	44
MalI	GATC	3 cut(s)	57, 167, 207
MboI	GATC	3 cut(s)	55, 165, 205
MboII	GAAGA	3 cut(s)	40, 215, 276
MflI	RGATCY	3 cut(s)	55, 165, 205
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	4 cut(s)	16, 24, 146, 226
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	238, 256
MvaI	CCWGG	2 cut(s)	238, 256
MwoI	GCNNNNNNNGC	2 cut(s)	40, 104
NdeII	GATC	3 cut(s)	55, 165, 205
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	23, 96
NlaIV	GGNNCC	1 cut(s)	220
NsbI	TGCGCA	1 cut(s)	97
NspI	RCATGY	1 cut(s)	96
NspV	TTCGAA	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	215
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	236, 254
PspGI	CCWGG	2 cut(s)	236, 254
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	114
PsuI	RGATCY	3 cut(s)	55, 165, 205
RsaI	GTAC	2 cut(s)	118, 195
RsaNI	GTAC	2 cut(s)	117, 194
Sau3AI	GATC	3 cut(s)	55, 165, 205
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	238, 256
SetI	ASST	7 cut(s)	9, 17, 87, 138, 217, 312, 322
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	110
SfuI	TTCGAA	1 cut(s)	10
SinI	GGWCC	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	177
SspMI	CTAG	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	236, 254
TaqI	TCGA	2 cut(s)	10, 297
TatI	WGTACW	2 cut(s)	116, 193
TscAI	CASTG	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	276, 280
TspRI	CASTG	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	317
XceI	RCATGY	1 cut(s)	96
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.