Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0023364

Physical Location & Seq

Genomic Coordinates Forward (+)

7712448 .. 7716365

Gene Structure 3918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG096700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAAAAGAAACTAGAGCTGCCTCTTGGGTTTTGCTTCTTCTACTTGTGCATCCCATTGGTCACAGCTTCTGACAGTTTGCTCTCCCCCAAAGGTGTCAACTTTGAAGTGGCTGCATTGATGTCAGTGAAGAAGGAGATGCAGGATGAGTTGCTTGTGATGGGTGGGTGGGATATCAACTCAGTTGATCCTTGCACTTGGAACATGGTGGGTTGTTCTGCTGAGGGATATGTAATCTCCGTTGCAATGGCCAGCTCGGGTTTATCCGGAATGCTTTCGCCAAGTATTGGGAATTTGAGTCATCTTCGGACATTGTTGTTACAAAACAATCAGTTGTCTGGTCCTATCCCAACTGAGATAGGGAGGCTTTCGCTGCTTGAAACTCTGGACCTTTCGGGTAACCAGTTTTCTGGAAACATTCCGAGTTCTTTGGGGTTTCTGACTCATCTAAGTTACTTGAGGCTTAATAGAAATAATTTGAGCGGTCAAATTCCTAGCCTTGTTGCTGATCTCACAGATCTTTCATTCTTGGATTTATCATTTAATAATCTTAGTGGGCCCACGCCAAAAATACTGGCGAAAGGCTACAGTGTGACAGGGAACAGCTTTCTTTGCAATCCTTTGTCAGCAGACTCAACACGAATCTGCGTGGATGTGTCAAAACCAGTAAACGTACAAACAGAAGATCCACAAGGTGGCACCAACCCTTCTGAGGCCAGGACTTACAGTTTCTCCAGGGATTACAGCGATGTTCGGCAAGACTCTTCATTCATCATCGAAGCCATTGAGCTTTCTGGACCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

268

Amino Acids

28.9

Weight (kDa)

4.84

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	34 - 73	2.7e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	95 - 180	2e-13	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023364)

Species	Orthologous Gene IDs
rosa_samantha	Rh5AG088400 Rh5BG083500 Rh5CG096700 Rh5DG083400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	698
AccB7I	CCANNNNNTGG	2 cut(s)	287, 695
AccBSI	CCGCTC	1 cut(s)	483
AccIII	TCCGGA	1 cut(s)	266
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	2 cut(s)	182, 680
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	292, 489
AdeI	CACNNNGTG	1 cut(s)	695
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	3 cut(s)	287, 695, 712
AgsI	TTSAA	2 cut(s)	107, 380
AjnI	CCWGG	2 cut(s)	716, 734
AluBI	AGCT	5 cut(s)	19, 68, 255, 606, 790
AluI	AGCT	5 cut(s)	19, 68, 255, 606, 790
AlwI	GGATC	2 cut(s)	182, 680
AlwNI	CAGNNNCTG	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	266
AoxI	GGCC	3 cut(s)	249, 557, 714
ApaI	GGGCCC	1 cut(s)	561
ApeKI	GCWGC	3 cut(s)	19, 113, 373
ApoI	RAATTY	2 cut(s)	292, 489
Asp700I	GAANNNNTTC	1 cut(s)	274
AspS9I	GGNCC	5 cut(s)	341, 388, 557, 558, 797
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	3 cut(s)	341, 388, 797
BaeGI	GKGCMC	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	698
BanII	GRGCYC	1 cut(s)	561
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	6, 100, 360
BccI	CCATC	1 cut(s)	154
BciT130I	CCWGG	2 cut(s)	718, 736
BfaI	CTAG	2 cut(s)	14, 495
BfmI	CTRYAG	1 cut(s)	586
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	3 cut(s)	20, 114, 374
BlsI	GCNGC	3 cut(s)	21, 115, 375
Bme1390I	CCNGG	2 cut(s)	718, 736
Bme18I	GGWCC	3 cut(s)	341, 388, 797
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	5 cut(s)	341, 388, 557, 558, 797
BmiI	GGNNCC	2 cut(s)	559, 700
BmrFI	CCNGG	2 cut(s)	718, 736
BmsI	GCATC	2 cut(s)	60, 129
BpmI	CTGGAG	1 cut(s)	718
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	735, 800
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 695, 712
Bse1I	ACTGG	3 cut(s)	403, 579, 665
Bse3DI	GCAATG	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	718, 736
BseDI	CCNNGG	2 cut(s)	735, 800
BseGI	GGATG	3 cut(s)	51, 151, 658
BseLI	CCNNNNNNNGG	3 cut(s)	287, 695, 712
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	4 cut(s)	195, 213, 345, 702
BseNI	ACTGG	3 cut(s)	403, 579, 665
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	3 cut(s)	6, 100, 360
BshFI	GGCC	3 cut(s)	251, 559, 716
BshNI	GGYRCC	1 cut(s)	698
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	287, 695, 712
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	251, 559, 716
BsoBI	CYCGRG	1 cut(s)	256
Bsp120I	GGGCCC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	266
Bsp143I	GATC	4 cut(s)	187, 508, 517, 685
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	3 cut(s)	251, 559, 716
BspCNI	CTCAG	4 cut(s)	194, 214, 346, 703
BspEI	TCCGGA	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	559, 700
BspPI	GGATC	2 cut(s)	182, 680
BspT107I	GGYRCC	1 cut(s)	698
BsrBI	CCGCTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	3 cut(s)	403, 579, 665
BssECI	CCNNGG	2 cut(s)	735, 800
BssMI	GATC	4 cut(s)	187, 508, 517, 685
Bst2UI	CCWGG	2 cut(s)	718, 736
Bst4CI	ACNGT	3 cut(s)	77, 590, 728
Bst6I	CTCTTC	1 cut(s)	769
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	6 cut(s)	181, 222, 354, 449, 551, 711
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	51, 151, 658
BstKTI	GATC	4 cut(s)	190, 511, 520, 688
BstMBI	GATC	4 cut(s)	187, 508, 517, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 612
BstNI	CCWGG	2 cut(s)	718, 736
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	716, 734
BstSFI	CTRYAG	1 cut(s)	586
BstSLI	GKGCMC	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	6, 100, 360
BstX2I	RGATCY	2 cut(s)	517, 685
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	2 cut(s)	517, 685
BsuRI	GGCC	3 cut(s)	251, 559, 716
BtgZI	GCGATG	1 cut(s)	762
BtsCI	GGATG	3 cut(s)	51, 151, 658
BtsIMutI	CAGTG	2 cut(s)	132, 595
Cac8I	GCNNGC	1 cut(s)	253
CaiI	CAGNNNCTG	1 cut(s)	71
Cfr13I	GGNCC	5 cut(s)	341, 388, 557, 558, 797
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	1 cut(s)	205
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	6 cut(s)	181, 222, 354, 449, 551, 711
DpnI	GATC	4 cut(s)	189, 510, 519, 687
DpnII	GATC	4 cut(s)	187, 508, 517, 685
DraIII	CACNNNGTG	1 cut(s)	695
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	769
EarI	CTCTTC	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	3 cut(s)	341, 388, 797
Eco88I	CYCGRG	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	716, 734
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	561
FaeI	CATG	1 cut(s)	208
FaiI	YATR	2 cut(s)	206, 231
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	20, 114, 374
FokI	GGATG	3 cut(s)	38, 158, 665
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	3 cut(s)	20, 114, 374
FspBI	CTAG	2 cut(s)	14, 495
GluI	GCNGC	3 cut(s)	20, 114, 374
GsuI	CTGGAG	1 cut(s)	718
HaeIII	GGCC	3 cut(s)	251, 559, 716
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	5 cut(s)	298, 442, 632, 642, 761
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	2 cut(s)	100, 670
Hpy188I	TCNGA	5 cut(s)	73, 309, 423, 441, 712
Hpy188III	TCNNGA	4 cut(s)	267, 386, 411, 795
Hpy8I	GTNNAC	2 cut(s)	100, 670
HpyAV	CCTTC	2 cut(s)	127, 717
HpyCH4III	ACNGT	3 cut(s)	77, 590, 728
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	6 cut(s)	51, 116, 142, 195, 245, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 612
HpyF3I	CTNAG	6 cut(s)	181, 222, 354, 449, 551, 711
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	266
Kzo9I	GATC	4 cut(s)	187, 508, 517, 685
Lsp1109I	GCAGC	3 cut(s)	6, 100, 360
LweI	GCATC	2 cut(s)	60, 129
MaeI	CTAG	2 cut(s)	14, 495
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	5 cut(s)	61, 318, 398, 452, 592
MalI	GATC	4 cut(s)	189, 510, 519, 687
MbiI	CCGCTC	1 cut(s)	483
MboI	GATC	4 cut(s)	187, 508, 517, 685
MboII	GAAGA	5 cut(s)	31, 142, 296, 695, 756
MflI	RGATCY	2 cut(s)	517, 685
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	292, 475, 489
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	4 cut(s)	307, 436, 626, 755
MnlI	CCTC	5 cut(s)	33, 217, 357, 453, 706
Mox20I	TGGCCA	1 cut(s)	251
MroI	TCCGGA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	2 cut(s)	465, 543
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	718, 736
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	2 cut(s)	718, 736
MwoI	GCNNNNNNNGC	2 cut(s)	373, 612
NdeII	GATC	4 cut(s)	187, 508, 517, 685
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	2 cut(s)	559, 700
NmuCI	GTSAC	2 cut(s)	61, 592
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	642
PflMI	CCANNNNNTGG	2 cut(s)	287, 695
PkrI	GCNGC	3 cut(s)	21, 115, 375
PleI	GAGTC	4 cut(s)	306, 436, 626, 755
PpsI	GAGTC	4 cut(s)	306, 436, 626, 755
Psp6I	CCWGG	2 cut(s)	716, 734
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	716, 734
PspN4I	GGNNCC	2 cut(s)	559, 700
PspOMI	GGGCCC	1 cut(s)	557
PspPI	GGNCC	5 cut(s)	341, 388, 557, 558, 797
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	517, 685
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	465, 543
SatI	GCNGC	3 cut(s)	20, 114, 374
Sau3AI	GATC	4 cut(s)	187, 508, 517, 685
Sau96I	GGNCC	5 cut(s)	341, 388, 557, 558, 797
SchI	GAGTC	4 cut(s)	307, 436, 626, 755
ScrFI	CCNGG	2 cut(s)	718, 736
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	2 cut(s)	60, 129
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	3 cut(s)	341, 388, 797
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	3 cut(s)	292, 475, 489
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	2 cut(s)	14, 495
StyD4I	CCNGG	2 cut(s)	716, 734
TaaI	ACNGT	3 cut(s)	77, 590, 728
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	1 cut(s)	777
TasI	AATT	3 cut(s)	292, 475, 489
TfiI	GAWTC	1 cut(s)	642
Tru1I	TTAA	2 cut(s)	465, 543
Tru9I	TTAA	2 cut(s)	465, 543
TscAI	CASTG	2 cut(s)	132, 595
TseFI	GTSAC	2 cut(s)	61, 592
TseI	GCWGC	3 cut(s)	19, 113, 373
Tsp45I	GTSAC	2 cut(s)	61, 592
TspDTI	ATGAA	4 cut(s)	17, 513, 756, 760
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	2 cut(s)	132, 595
Van91I	CCANNNNNTGG	2 cut(s)	287, 695
VpaK11BI	GGWCC	3 cut(s)	341, 388, 797
XapI	RAATTY	2 cut(s)	292, 489
XmnI	GAANNNNTTC	1 cut(s)	274
XspI	CTAG	2 cut(s)	14, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.