Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0023364

Physical Location & Seq

Genomic Coordinates Forward (+)

7333833 .. 7334261

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG083400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTACGCTGCATGAAAATACTTTTTGCCTTGCACAAATCTTTATGTCAACTGTTTTCTATTGTGAGACATCAGTTTTTGCCCTTTTTTCACGCTGTTGACATGCAGGTTCGAACCTTACATGAGGAGAAGAGGCTGGAAGTGCTAGTAGACAGGGATCTAAAAGGATGTTTTGATGCAACTGAGCTTGAAACATGTGCAGAGTTGGCTCTGCAGTGTACTCAGTCAAGCCCCAACCTCCGGCCAAAGATGTCAGATGTCCTAAAGATCTTGGAAGGCCTTGTTGGGCAATCAGTACAAACAGAAGATCCACAAGGTGGCACCAACCCTTCTGAGGCCAGGACTTGCAGTTTCTCCAGGGATTACAGCGATGTTCGGCAAGACTCTTCATTCATCATCGAAGCCATTGAGCTTTCTGGACCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

142

Amino Acids

16.09

Weight (kDa)

5.54

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023364)

Species	Orthologous Gene IDs
rosa_samantha	Rh5AG088400 Rh5BG083500 Rh5CG096700 Rh5DG083400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	150
AclWI	GGATC	2 cut(s)	165, 302
AcoI	YGGCCR	1 cut(s)	242
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	220, 297
AfiI	CCNNNNNNNGG	3 cut(s)	240, 317, 334
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	338, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	2 cut(s)	187, 412
AluI	AGCT	2 cut(s)	187, 412
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	165, 302
AoxI	GGCC	3 cut(s)	242, 277, 336
ApeKI	GCWGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	340, 358
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	97
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	340, 358
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	340, 358
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	340
Bpu14I	TTCGAA	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	357, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 317, 334
BseBI	CCWGG	2 cut(s)	340, 358
BseDI	CCNNGG	2 cut(s)	357, 422
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	3 cut(s)	240, 317, 334
BseMII	CTCAG	3 cut(s)	174, 236, 324
BseRI	GAGGAG	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	244, 279, 338
BshNI	GGYRCC	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	241
BslI	CCNNNNNNNGG	3 cut(s)	240, 317, 334
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	3 cut(s)	244, 279, 338
Bsp119I	TTCGAA	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	157, 267, 307
BspANI	GGCC	3 cut(s)	244, 279, 338
BspCNI	CTCAG	3 cut(s)	175, 235, 325
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	2 cut(s)	165, 302
BspT104I	TTCGAA	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	357, 422
BssMI	GATC	3 cut(s)	157, 267, 307
Bst2UI	CCWGG	2 cut(s)	340, 358
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	2 cut(s)	125, 391
BstBI	TTCGAA	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	183, 222, 333
BstF5I	GGATG	1 cut(s)	173
BstKTI	GATC	3 cut(s)	160, 270, 310
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	3 cut(s)	157, 267, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 206
BstNI	CCWGG	2 cut(s)	340, 358
BstNSI	RCATGY	2 cut(s)	106, 198
BstSCI	CCNGG	2 cut(s)	338, 356
BstSFI	CTRYAG	1 cut(s)	212
BstX2I	RGATCY	3 cut(s)	157, 267, 307
BstYI	RGATCY	3 cut(s)	157, 267, 307
BsuRI	GGCC	3 cut(s)	244, 279, 338
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	219, 296
CviAII	CATG	4 cut(s)	13, 103, 122, 195
CviJI	RGCY	9 cut(s)	136, 187, 209, 231, 244, 279, 338, 404, 412
CviKI_1	RGCY	9 cut(s)	136, 187, 209, 231, 244, 279, 338, 404, 412
CviQI	GTAC	2 cut(s)	219, 296
DdeI	CTNAG	3 cut(s)	183, 222, 333
DpnI	GATC	3 cut(s)	159, 269, 309
DpnII	GATC	3 cut(s)	157, 267, 307
DraIII	CACNNNGTG	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	2 cut(s)	125, 391
EarI	CTCTTC	2 cut(s)	125, 391
Eco147I	AGGCCT	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	338, 356
FaeI	CATG	4 cut(s)	16, 106, 125, 198
FaiI	YATR	5 cut(s)	14, 46, 104, 123, 196
FatI	CATG	4 cut(s)	12, 102, 121, 194
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	10
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	3 cut(s)	244, 279, 338
HapII	CCGG	1 cut(s)	241
Hin1II	CATG	4 cut(s)	16, 106, 125, 198
HincII	GTYRAC	2 cut(s)	50, 100
HindII	GTYRAC	2 cut(s)	50, 100
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	241
Hpy166II	GTNNAC	4 cut(s)	50, 100, 151, 219
Hpy188I	TCNGA	2 cut(s)	256, 334
Hpy188III	TCNNGA	1 cut(s)	417
Hpy8I	GTNNAC	4 cut(s)	50, 100, 151, 219
HpyAV	CCTTC	2 cut(s)	269, 339
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	7 cut(s)	12, 34, 106, 179, 200, 214, 348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 206
HpyF3I	CTNAG	3 cut(s)	183, 222, 333
Hsp92II	CATG	4 cut(s)	16, 106, 125, 198
Kzo9I	GATC	3 cut(s)	157, 267, 307
LpnPI	CCDG	9 cut(s)	92, 122, 139, 254, 325, 343, 352, 370, 402
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	146
MalI	GATC	3 cut(s)	159, 269, 309
MboI	GATC	3 cut(s)	157, 267, 307
MboII	GAAGA	3 cut(s)	142, 317, 378
MflI	RGATCY	3 cut(s)	157, 267, 307
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	4 cut(s)	118, 126, 248, 328
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	340, 358
MvaI	CCWGG	2 cut(s)	340, 358
MwoI	GCNNNNNNNGC	2 cut(s)	142, 206
NdeII	GATC	3 cut(s)	157, 267, 307
NlaIII	CATG	4 cut(s)	16, 106, 125, 198
NlaIV	GGNNCC	1 cut(s)	322
NspI	RCATGY	2 cut(s)	106, 198
NspV	TTCGAA	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	279
PciI	ACATGT	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PscI	ACATGT	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	338, 356
PspGI	CCWGG	2 cut(s)	338, 356
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	216
PsuI	RGATCY	3 cut(s)	157, 267, 307
RsaI	GTAC	2 cut(s)	220, 297
RsaNI	GTAC	2 cut(s)	219, 296
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	3 cut(s)	157, 267, 307
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	340, 358
SetI	ASST	7 cut(s)	111, 119, 189, 240, 319, 414, 424
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	212
SfuI	TTCGAA	1 cut(s)	112
SinI	GGWCC	1 cut(s)	419
SseBI	AGGCCT	1 cut(s)	279
SspMI	CTAG	1 cut(s)	146
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	338, 356
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	112, 399
TatI	WGTACW	2 cut(s)	218, 295
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	1 cut(s)	9
TspDTI	ATGAA	3 cut(s)	29, 378, 382
TspRI	CASTG	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	419
XceI	RCATGY	2 cut(s)	106, 198
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.