Rh5BG113600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0021435
Physical Location & Seq
Forward (+)
10650872 .. 10651550
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG113600.1

Sequence Viewer

Length: 543 bp
ATGTCCAAACCTTCATCCTCTCATCATTCACGTGGTCGTTGCAGCTCACCTCTAGATTTGCAAGTGACAGGGACGACAACCTTGGCTCTCATCGGTGAAGATGTGATATATGTGGTTACTGACCAGAGAAGCACTTACAAGCCACCTCCTTTCATGATAGCGGATGAAAGTTGCTCAAAAACTTTTGTCATTTCAAGCAATGTGTTGGCTACATGGGCTGGAAATCCGCGTATTTGTTCGGACTTGTGTATAGATGTAAAGTCGCGTGTCAATCAAGATATAATTGCTGGTAAATTACAGAGCGGCAATGTTGCGCGTGCTGCAGCAACTTATGGTCGTAAGTGGATCACTAAATGGGAGGATCAGCGTCCGAACATGACCTTTTCGTGTCAAATAATGATAGTTGGTTGGTCTGATGGTAAATGTGTAGCCTTTGACCTTCAATCTCCCAAATTCCATCAACTACATGTCAAACATGCTCATGGAGATGGATTTACTCATGGATCCAGTGCGGATTATGTTAAAAGCTTATTATCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.76

Weight (kDa)

8.76

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 23 - 76 5.5e-06 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021435)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0014851
rosa_laevigata RLG00000032148
rosa_roxburghii Rroxscaffold_1G00061720
rosa_samantha Rh5BG113600 Rh5CG125300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 303
AccII CGCG 3 cut(s) 229, 265, 316
AciI CCGC 4 cut(s) 161, 227, 303, 512
AclWI GGATC 4 cut(s) 353, 369, 498, 511
AcsI RAATTY 1 cut(s) 452
AcvI CACGTG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 2 cut(s) 195, 443
AluBI AGCT 2 cut(s) 45, 528
AluI AGCT 2 cut(s) 45, 528
AlwI GGATC 4 cut(s) 353, 369, 498, 511
ApeKI GCWGC 3 cut(s) 42, 320, 323
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 39, 107
BamHI GGATCC 1 cut(s) 503
BbrPI CACGTG 1 cut(s) 32
BbvI GCAGC 3 cut(s) 54, 307, 335
BccI CCATC 3 cut(s) 410, 465, 482
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 4 cut(s) 43, 304, 321, 324
BlsI GCNGC 4 cut(s) 44, 305, 322, 325
BmiI GGNNCC 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 507
Bse3DI GCAATG 2 cut(s) 205, 313
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 14, 169
BseMI GCAATG 2 cut(s) 205, 313
BseNI ACTGG 1 cut(s) 507
BseXI GCAGC 3 cut(s) 54, 307, 335
Bsh1236I CGCG 3 cut(s) 229, 265, 316
BslFI GGGAC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 85
Bsp143I GATC 3 cut(s) 345, 361, 503
BspACI CCGC 4 cut(s) 161, 227, 303, 512
BspFNI CGCG 3 cut(s) 229, 265, 316
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 505
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 4 cut(s) 353, 369, 498, 511
BsrBI CCGCTC 1 cut(s) 303
BsrDI GCAATG 2 cut(s) 205, 313
BsrI ACTGG 1 cut(s) 507
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 345, 361, 503
BssT1I CCWWGG 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 318
BstF5I GGATG 2 cut(s) 14, 169
BstFNI CGCG 3 cut(s) 229, 265, 316
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 3 cut(s) 348, 364, 506
BstMBI GATC 3 cut(s) 345, 361, 503
BstMWI GCNNNNNNNGC 2 cut(s) 215, 320
BstNSI RCATGY 2 cut(s) 470, 479
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 3 cut(s) 229, 265, 316
BstV1I GCAGC 3 cut(s) 54, 307, 335
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BtsCI GGATG 2 cut(s) 14, 169
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 316
CseI GACGC 1 cut(s) 356
CviAII CATG 7 cut(s) 154, 213, 376, 467, 476, 482, 500
CviJI RGCY 7 cut(s) 45, 86, 142, 209, 218, 431, 528
CviKI_1 RGCY 7 cut(s) 45, 86, 142, 209, 218, 431, 528
DpnI GATC 3 cut(s) 347, 363, 505
DpnII GATC 3 cut(s) 345, 361, 503
Eco130I CCWWGG 1 cut(s) 81
Eco72I CACGTG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 7 cut(s) 157, 216, 379, 470, 479, 485, 503
FaqI GGGAC 1 cut(s) 85
FatI CATG 7 cut(s) 153, 212, 375, 466, 475, 481, 499
Fnu4HI GCNGC 4 cut(s) 43, 304, 321, 324
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 43, 304, 321, 324
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 315
GluI GCNGC 4 cut(s) 43, 304, 321, 324
HgaI GACGC 1 cut(s) 356
HhaI GCGC 1 cut(s) 316
Hin1II CATG 7 cut(s) 157, 216, 379, 470, 479, 485, 503
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 526
HphI GGTGA 2 cut(s) 39, 107
Hpy188I TCNGA 3 cut(s) 241, 372, 415
Hpy188III TCNNGA 3 cut(s) 53, 154, 275
HpyAV CCTTC 2 cut(s) 21, 449
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 42, 61, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 320
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 7 cut(s) 157, 216, 379, 470, 479, 485, 503
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 3 cut(s) 345, 361, 503
LpnPI CCDG 5 cut(s) 54, 137, 204, 273, 520
Lsp1109I GCAGC 3 cut(s) 54, 307, 335
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 64, 115
MalI GATC 3 cut(s) 347, 363, 505
MbiI CCGCTC 1 cut(s) 303
MboI GATC 3 cut(s) 345, 361, 503
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 503
MluCI AATT 4 cut(s) 282, 293, 452, 538
MnlI CCTC 4 cut(s) 28, 60, 156, 352
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 3 cut(s) 30, 480, 486
MvnI CGCG 3 cut(s) 229, 265, 316
MwoI GCNNNNNNNGC 2 cut(s) 215, 320
NdeII GATC 3 cut(s) 345, 361, 503
NlaIII CATG 7 cut(s) 157, 216, 379, 470, 479, 485, 503
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 2 cut(s) 470, 479
PagI TCATGA 1 cut(s) 153
PciI ACATGT 1 cut(s) 466
PkrI GCNGC 4 cut(s) 44, 305, 322, 325
PmaCI CACGTG 1 cut(s) 32
PmlI CACGTG 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 32
PscI ACATGT 1 cut(s) 466
PspCI CACGTG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 505
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 503
RseI CAYNNNNRTG 3 cut(s) 30, 480, 486
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 4 cut(s) 43, 304, 321, 324
Sau3AI GATC 3 cut(s) 345, 361, 503
SetI ASST 9 cut(s) 13, 34, 47, 52, 83, 148, 383, 441, 530
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 3 cut(s) 30, 480, 486
Sse9I AATT 4 cut(s) 282, 293, 452, 538
SsiI CCGC 4 cut(s) 161, 227, 303, 512
SspMI CTAG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 536
TasI AATT 4 cut(s) 282, 293, 452, 538
TauI GCSGC 1 cut(s) 306
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 42, 320, 323
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 142, 180
TspRI CASTG 1 cut(s) 514
XapI RAATTY 1 cut(s) 452
XbaI TCTAGA 1 cut(s) 52
XceI RCATGY 2 cut(s) 470, 479
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.