Rh5BG398200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0022706
Physical Location & Seq
Forward (+)
64596351 .. 64618575
22225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG398200.1

Sequence Viewer

Length: 636 bp
ATGGAGAGGGATTTCTTGGGTTTGAGTTCAAATAAGAGCAGTGTGAATGTGAAAGATGAAGCCAATGATGAACTCAAGAATTCAGAGTCTATCATAACCAGGCTAAACATAATTGTTTATGCAATAGGTAGTTCCCCAATTGACGTCAACGCCTTGGAAAAAAACCCATCTCTATTCTGCCTTGTCCTGACCCCAGTGTGGTTCATCTTTCTGCTTGTGCAAGTTTCTAGCAGGATCATGTCAGAAGCTCCGTCAACGGAAGCAGTAGGGTCATCGCCGAATACCCATGAAAATTTGCAGGAGCAATCCGGACAAAAAAGACAGGGGATAAGGAATCCACGGGGTCACCGTCATCCATTACCGCCTGGCCTGGGGACGCCAATTATAGCAATCATCAGTAGTCCGCCGGTGAATAATATGTATATGCATGAACCCAATAACACCGCAGATCACCCTCTACGACCACCAACACCAGCACATCCCAATTTCGTCCCAAATCATCAAAATTTCATTTCACGTGGAGTCAAGAAATGGTGCTCGGAGATGCTCCAATCCAGATTTTGTGAAGCTGGGCGTGGTCAGAGAGGGACCGAGTTATGTCTTCGTCGTCAGTTCTTCACTCAGGCTTGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

211

Amino Acids

23.51

Weight (kDa)

8.68

Isoelectric Point (pI)

65.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022706)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0493251
rosa_samantha Rh5BG398200 Rh5CG422200 Rh6BG188900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 3 cut(s) 362, 404, 444
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 3 cut(s) 79, 292, 505
AcvI CACGTG 1 cut(s) 518
AcyI GRCGYC 2 cut(s) 144, 377
AfiI CCNNNNNNNGG 2 cut(s) 198, 371
AgsI TTSAA 1 cut(s) 30
AjnI CCWGG 3 cut(s) 98, 364, 369
AluBI AGCT 2 cut(s) 248, 569
AluI AGCT 2 cut(s) 248, 569
Alw21I GWGCWC 1 cut(s) 539
AlwI GGATC 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 308
AoxI GGCC 1 cut(s) 367
ApoI RAATTY 3 cut(s) 79, 292, 505
AspS9I GGNCC 1 cut(s) 588
AsuHPI GGTGA 3 cut(s) 338, 421, 443
AvaII GGWCC 1 cut(s) 588
BbrPI CACGTG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 539
BccI CCATC 1 cut(s) 175
BciT130I CCWGG 3 cut(s) 100, 366, 371
BfaI CTAG 1 cut(s) 228
Bme1390I CCNGG 3 cut(s) 100, 366, 371
Bme18I GGWCC 1 cut(s) 588
BmgT120I GGNCC 1 cut(s) 588
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 3 cut(s) 100, 366, 371
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 518
BsaHI GRCGYC 2 cut(s) 144, 377
BsaJI CCNNGG 3 cut(s) 153, 338, 370
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 371
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 194
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 3 cut(s) 100, 366, 371
BseDI CCNNGG 3 cut(s) 153, 338, 370
BseGI GGATG 2 cut(s) 352, 478
BseLI CCNNNNNNNGG 2 cut(s) 198, 371
BseMII CTCAG 1 cut(s) 635
BseNI ACTGG 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 569
BshFI GGCC 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 2 cut(s) 309, 407
BslFI GGGAC 3 cut(s) 388, 476, 601
BslI CCNNNNNNNGG 2 cut(s) 198, 371
BsmFI GGGAC 3 cut(s) 388, 476, 601
BsnI GGCC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 539
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 2 cut(s) 234, 448
BspACI CCGC 3 cut(s) 362, 404, 444
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 634
BspEI TCCGGA 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 589
BspPI GGATC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 3 cut(s) 153, 338, 370
BssMI GATC 2 cut(s) 234, 448
BssNI GRCGYC 2 cut(s) 144, 377
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 3 cut(s) 100, 366, 371
Bst4CI ACNGT 1 cut(s) 350
BstACI GRCGYC 2 cut(s) 144, 377
BstBAI YACGTR 1 cut(s) 518
BstDEI CTNAG 1 cut(s) 621
BstDSI CCRYGG 1 cut(s) 338
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 2 cut(s) 352, 478
BstKTI GATC 2 cut(s) 237, 451
BstMBI GATC 2 cut(s) 234, 448
BstNI CCWGG 3 cut(s) 100, 366, 371
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 3 cut(s) 98, 364, 369
BstV2I GAAGAC 1 cut(s) 593
BsuRI GGCC 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 338
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 352, 478
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 46, 201
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 588
CseI GACGC 1 cut(s) 385
CviAII CATG 3 cut(s) 238, 287, 428
CviJI RGCY 6 cut(s) 62, 103, 248, 369, 569, 626
CviKI_1 RGCY 6 cut(s) 62, 103, 248, 369, 569, 626
DdeI CTNAG 1 cut(s) 621
DpnI GATC 2 cut(s) 236, 450
DpnII GATC 2 cut(s) 234, 448
EciI GGCGGA 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 588
Eco72I CACGTG 1 cut(s) 518
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 3 cut(s) 98, 364, 369
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 241, 290, 431
FaqI GGGAC 3 cut(s) 388, 476, 601
FatI CATG 3 cut(s) 237, 286, 427
FokI GGATG 2 cut(s) 339, 465
FspBI CTAG 1 cut(s) 228
GsaI CCCAGC 1 cut(s) 573
HaeIII GGCC 1 cut(s) 369
HapII CCGG 2 cut(s) 309, 407
HgaI GACGC 1 cut(s) 385
Hin1I GRCGYC 2 cut(s) 144, 377
Hin1II CATG 3 cut(s) 241, 290, 431
HincII GTYRAC 2 cut(s) 148, 255
HindII GTYRAC 2 cut(s) 148, 255
HinfI GANTC 3 cut(s) 86, 334, 522
HpaII CCGG 2 cut(s) 309, 407
HphI GGTGA 3 cut(s) 338, 421, 443
Hpy166II GTNNAC 2 cut(s) 148, 255
Hpy188I TCNGA 4 cut(s) 85, 244, 541, 582
Hpy188III TCNNGA 5 cut(s) 76, 187, 309, 526, 555
Hpy8I GTNNAC 2 cut(s) 148, 255
Hpy99I CGWCG 1 cut(s) 609
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 2 cut(s) 144, 517
HpyCH4V TGCA 4 cut(s) 122, 220, 298, 427
HpyF3I CTNAG 1 cut(s) 621
HpySE526I ACGT 2 cut(s) 144, 517
Hsp92I GRCGYC 2 cut(s) 144, 377
Hsp92II CATG 3 cut(s) 241, 290, 431
Kpn2I TCCGGA 1 cut(s) 308
Kzo9I GATC 2 cut(s) 234, 448
LmnI GCTCC 3 cut(s) 253, 301, 552
LweI GCATC 1 cut(s) 534
MaeI CTAG 1 cut(s) 228
MaeII ACGT 2 cut(s) 144, 517
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 236, 450
MboI GATC 2 cut(s) 234, 448
MboII GAAGA 2 cut(s) 593, 607
MfeI CAATTG 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 7 cut(s) 79, 111, 138, 292, 381, 484, 505
MlyI GAGTC 2 cut(s) 95, 531
MnlI CCTC 2 cut(s) 465, 578
Mph1103I ATGCAT 1 cut(s) 429
MroI TCCGGA 1 cut(s) 308
MspI CCGG 2 cut(s) 309, 407
MspR9I CCNGG 3 cut(s) 100, 366, 371
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 3 cut(s) 100, 366, 371
NdeII GATC 2 cut(s) 234, 448
NlaIII CATG 3 cut(s) 241, 290, 431
NlaIV GGNNCC 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 346
PfeI GAWTC 1 cut(s) 334
PleI GAGTC 2 cut(s) 94, 530
PmaCI CACGTG 1 cut(s) 518
PmlI CACGTG 1 cut(s) 518
PpsI GAGTC 2 cut(s) 94, 530
Ppu21I YACGTR 1 cut(s) 518
Psp6I CCWGG 3 cut(s) 98, 364, 369
PspCI CACGTG 1 cut(s) 518
PspEI GGTNACC 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 569
PspGI CCWGG 3 cut(s) 98, 364, 369
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 1 cut(s) 588
Sau3AI GATC 2 cut(s) 234, 448
Sau96I GGNCC 1 cut(s) 588
SchI GAGTC 2 cut(s) 95, 531
ScrFI CCNGG 3 cut(s) 100, 366, 371
SduI GDGCHC 1 cut(s) 539
SetI ASST 5 cut(s) 130, 147, 250, 520, 571
SfaNI GCATC 1 cut(s) 534
SgrAI CRCCGGYG 1 cut(s) 406
SinI GGWCC 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 7 cut(s) 79, 111, 138, 292, 381, 484, 505
SsiI CCGC 3 cut(s) 362, 404, 444
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 3 cut(s) 98, 364, 369
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 2 cut(s) 147, 520
TaqII GACCGA 1 cut(s) 605
TasI AATT 7 cut(s) 79, 111, 138, 292, 381, 484, 505
TfiI GAWTC 1 cut(s) 334
TscAI CASTG 2 cut(s) 46, 201
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 6 cut(s) 72, 84, 193, 303, 444, 499
TspGWI ACGGA 2 cut(s) 240, 272
TspRI CASTG 2 cut(s) 46, 201
VpaK11BI GGWCC 1 cut(s) 588
XapI RAATTY 3 cut(s) 79, 292, 505
XspI CTAG 1 cut(s) 228
ZraI GACGTC 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.