Rh5CG422200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0022706
Physical Location & Seq
Forward (+)
58309456 .. 58343125
33670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG422200.1

Sequence Viewer

Length: 1473 bp
ATGTCAGAAGCTCCGTCAACGGAAGCAGTAGGGTCATCGCCGAATACCCATGAAAATTTGCAGGAGCAATCCGGACAAAAAAGACAGGGGATAAGGAATCCACGGGGTCACCGTCATCCATTACCGCCTGGCCTGGGGACGCCAATTATAGCAATCATCAGTAGTCCGCCGGTGAATAATATGTATATGCATGAACCCAATAACACCGCAGATCACCCTCTACGACCACCAACACCAGCACATCCCAATTTCGTCCCAAATCATCAAAATTTCATTTCACCGATGATAAGAACGGACCTAGTTACCTATGCCTCTCTGCATCTTGCTGCTCTTAACGGTGACTGGATTACTGCTTGGAATCTGTTGAAAGATAATCCGGCAGCTACTGATACAATATTGAAAGACAATGATCGTGTGGAGCTTCTTATTGCCGCCATAACATCAGATCTTTACGATGTAGCACTGCATATTATCCAAAAGCACCCGGAAATGGCTCTGGCCCGTGATGAGAATGGAGAGACTGCACTTCATATAATGGCCCGAAAACCTTTAGCATATTGCAGTCGACATCAGCTCGAAATTTGGAAACGGTGCTTATTTTCAGTCGCCAATATTAAGGTCACCTGCGAAAAAGGTATCGTGCATGAACTTGTGGAACAGCTGTGGAATAAAGTACTGACATTAGAAATTGATTCAAAGATAAGCGATTTTATTCGATCACCCTCTCGCTTACTGTTTAGTGCTGCCGAATTAGGGAACATTGACTTTTTGATTATACTTATAAGATCATACCCTAATCTTATTTGGAAACTTGATGAGCAAAAGCGAAGCATATTCCACACTGCAGTGGTTCACAGGCAGGAGAAAGTTTTCAACCTCATTTATGAATTAGGTGGAATAAAAGATTTGATAGCATCTTATAAAGATGATGACGATAATAATATGCTTCATTTGGCTGCAAAGCTTGCACCTGCCAATCGTCTGGATGCTGATACTGGAGCAGCATTGCAATTGAGAAGAGAGTTGCATTGGTTTAAGGTCAAGTCAAGAAATGGTGCTCGGAGATGCTCCAATCCAGATTTTGTGAAGCTGGGCGTGGTCAGAGAGGGACCGAGTTATGTCTTCGTCGTCAGTTCTTCACTCAGGCTTGTGTTTGAAAATGATTTCAGAATTGTCAACTCGTTAGTAGCACCAATTGAGGATGAGATGGAAATGGCAAAGGCTGGTGGGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGCATATCTCAAGAAGCGTATGCAAAGCCATTCTCCTGAGGTTGGAGCAGCCAAGTCAAGTAAGCTCAAAGAGATCATTCTGAAAAAGAAGTTGGAAATGGAGGACAAGCTGTTGGATGCTCCACTGGACACACTAGGTGCTGCTGCCTTGGCACTACACTATGCAAGTATGAGAGAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

490

Amino Acids

54.91

Weight (kDa)

7.06

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022706)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0493251
rosa_samantha Rh5BG398200 Rh5CG422200 Rh6BG188900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 782, 921
AarI CACCTGC 2 cut(s) 632, 979
Acc36I ACCTGC 3 cut(s) 632, 979, 1297
AccI GTMKAC 1 cut(s) 565
AccIII TCCGGA 1 cut(s) 71
AciI CCGC 4 cut(s) 125, 167, 207, 432
AcsI RAATTY 3 cut(s) 55, 268, 579
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 1427
AfaI GTAC 1 cut(s) 675
AfiI CCNNNNNNNGG 4 cut(s) 134, 490, 753, 1331
AflIII ACRYGT 1 cut(s) 1256
AgsI TTSAA 6 cut(s) 367, 400, 696, 874, 1157, 1282
AjnI CCWGG 2 cut(s) 127, 132
AjuI GAANNNNNNNTTGG 2 cut(s) 1364, 1396
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 9 cut(s) 11, 383, 421, 574, 661, 964, 1090, 1354, 1399
AluI AGCT 9 cut(s) 11, 383, 421, 574, 661, 964, 1090, 1354, 1399
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 1 cut(s) 512
AlwNI CAGNNNCTG 1 cut(s) 386
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 3 cut(s) 130, 498, 537
ApeKI GCWGC 8 cut(s) 326, 380, 743, 956, 1001, 1337, 1430, 1433
ApoI RAATTY 3 cut(s) 55, 268, 579
Asp700I GAANNNNTTC 1 cut(s) 869
AspS9I GGNCC 4 cut(s) 295, 499, 538, 1109
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 7 cut(s) 101, 184, 206, 270, 350, 613, 711
AvaII GGWCC 2 cut(s) 295, 1109
AxyI CCTNAGG 1 cut(s) 1326
BbsI GAAGAC 1 cut(s) 1114
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 8 cut(s) 313, 392, 730, 943, 1013, 1349, 1417, 1420
BccI CCATC 1 cut(s) 1201
BciT130I CCWGG 2 cut(s) 129, 134
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 1 cut(s) 512
BfaI CTAG 3 cut(s) 299, 1275, 1424
BfmI CTRYAG 1 cut(s) 843
BfuAI ACCTGC 3 cut(s) 632, 979, 1297
BglII AGATCT 1 cut(s) 445
BisI GCNGC 9 cut(s) 327, 381, 432, 744, 957, 1002, 1338, 1431, 1434
BlsI GCNGC 9 cut(s) 328, 382, 433, 745, 958, 1003, 1339, 1432, 1435
BmcAI AGTACT 1 cut(s) 675
Bme1390I CCNGG 3 cut(s) 129, 134, 485
Bme18I GGWCC 2 cut(s) 295, 1109
BmgT120I GGNCC 4 cut(s) 295, 499, 538, 1109
BmiI GGNNCC 1 cut(s) 1110
BmrFI CCNGG 3 cut(s) 129, 134, 485
BmsI GCATC 5 cut(s) 328, 923, 976, 1055, 1396
BpiI GAAGAC 1 cut(s) 1114
BpmI CTGGAG 1 cut(s) 1017
BpuEI CTTGAG 1 cut(s) 1283
BpuMI CCSGG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 101, 133, 1437
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 490, 753, 1331
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 3 cut(s) 347, 1000, 1419
Bse21I CCTNAGG 1 cut(s) 1326
Bse3DI GCAATG 1 cut(s) 1004
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 2 cut(s) 129, 134
BseDI CCNNGG 3 cut(s) 101, 133, 1437
BseGI GGATG 5 cut(s) 115, 241, 991, 1207, 1411
BseLI CCNNNNNNNGG 4 cut(s) 134, 490, 753, 1331
BseMI GCAATG 1 cut(s) 1004
BseMII CTCAG 2 cut(s) 1156, 1317
BseNI ACTGG 3 cut(s) 347, 1000, 1419
BseXI GCAGC 8 cut(s) 313, 392, 730, 943, 1013, 1349, 1417, 1420
BseYI CCCAGC 1 cut(s) 1090
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 3 cut(s) 132, 500, 539
BsiHKAI GWGCWC 1 cut(s) 1060
BsiSI CCGG 4 cut(s) 72, 170, 377, 485
BslFI GGGAC 3 cut(s) 151, 239, 1122
BslI CCNNNNNNNGG 4 cut(s) 134, 490, 753, 1331
BsmAI GTCTC 1 cut(s) 512
BsmFI GGGAC 3 cut(s) 151, 239, 1122
BsnI GGCC 3 cut(s) 132, 500, 539
Bsp1286I GDGCHC 1 cut(s) 1060
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 6 cut(s) 211, 409, 445, 716, 785, 1362
BspACI CCGC 4 cut(s) 125, 167, 207, 432
BspANI GGCC 3 cut(s) 132, 500, 539
BspCNI CTCAG 2 cut(s) 1155, 1318
BspEI TCCGGA 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 1110
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 3 cut(s) 632, 979, 1297
BsrDI GCAATG 1 cut(s) 1004
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 3 cut(s) 347, 1000, 1419
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 3 cut(s) 101, 133, 1437
BssMI GATC 6 cut(s) 211, 409, 445, 716, 785, 1362
BssNI GRCGYC 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 1437
Bst2UI CCWGG 2 cut(s) 129, 134
Bst4CI ACNGT 4 cut(s) 113, 338, 591, 735
Bst6I CTCTTC 1 cut(s) 1012
BstACI GRCGYC 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 965
BstC8I GCNNGC 1 cut(s) 966
BstDEI CTNAG 2 cut(s) 1142, 1326
BstDSI CCRYGG 1 cut(s) 101
BstEII GGTNACC 2 cut(s) 107, 619
BstF5I GGATG 5 cut(s) 115, 241, 991, 1207, 1411
BstKTI GATC 6 cut(s) 214, 412, 448, 719, 788, 1365
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 6 cut(s) 211, 409, 445, 716, 785, 1362
BstMWI GCNNNNNNNGC 2 cut(s) 965, 1439
BstNI CCWGG 2 cut(s) 129, 134
BstNSI RCATGY 1 cut(s) 1260
BstPI GGTNACC 2 cut(s) 107, 619
BstSCI CCNGG 3 cut(s) 127, 132, 483
BstSFI CTRYAG 1 cut(s) 843
BstV1I GCAGC 8 cut(s) 313, 392, 730, 943, 1013, 1349, 1417, 1420
BstV2I GAAGAC 1 cut(s) 1114
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 982
BstYI RGATCY 1 cut(s) 445
Bsu36I CCTNAGG 1 cut(s) 1326
BsuRI GGCC 3 cut(s) 132, 500, 539
BtgI CCRYGG 1 cut(s) 101
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 5 cut(s) 115, 241, 991, 1207, 1411
BtsI GCAGTG 3 cut(s) 461, 840, 852
BtsIMutI CAGTG 4 cut(s) 461, 840, 852, 1412
BveI ACCTGC 3 cut(s) 632, 979, 1297
Cac8I GCNNGC 1 cut(s) 966
CaiI CAGNNNCTG 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 4 cut(s) 295, 499, 538, 1109
CseI GACGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 674
CviAII CATG 4 cut(s) 50, 191, 644, 1257
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 2 cut(s) 1142, 1326
DpnI GATC 6 cut(s) 213, 411, 447, 718, 787, 1364
DpnII GATC 6 cut(s) 211, 409, 445, 716, 785, 1362
DraIII CACNNNGTG 1 cut(s) 1427
Eam1104I CTCTTC 1 cut(s) 1012
EarI CTCTTC 1 cut(s) 1012
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 1437
Eco47I GGWCC 2 cut(s) 295, 1109
Eco81I CCTNAGG 1 cut(s) 1326
Eco91I GGTNACC 2 cut(s) 107, 619
EcoO65I GGTNACC 2 cut(s) 107, 619
EcoRII CCWGG 2 cut(s) 127, 132
EcoT14I CCWWGG 1 cut(s) 1437
EcoT22I ATGCAT 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 1437
FaeI CATG 4 cut(s) 53, 194, 647, 1260
FaqI GGGAC 3 cut(s) 151, 239, 1122
FatI CATG 4 cut(s) 49, 190, 643, 1256
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 9 cut(s) 327, 381, 432, 744, 957, 1002, 1338, 1431, 1434
FokI GGATG 5 cut(s) 102, 228, 998, 1214, 1418
Fsp4HI GCNGC 9 cut(s) 327, 381, 432, 744, 957, 1002, 1338, 1431, 1434
FspBI CTAG 3 cut(s) 299, 1275, 1424
GluI GCNGC 9 cut(s) 327, 381, 432, 744, 957, 1002, 1338, 1431, 1434
GsaI CCCAGC 1 cut(s) 1094
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 3 cut(s) 132, 500, 539
HapII CCGG 4 cut(s) 72, 170, 377, 485
HgaI GACGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 4 cut(s) 53, 194, 647, 1260
HincII GTYRAC 3 cut(s) 18, 566, 1177
HindII GTYRAC 3 cut(s) 18, 566, 1177
HindIII AAGCTT 1 cut(s) 962
HinfI GANTC 3 cut(s) 97, 358, 692
HpaII CCGG 4 cut(s) 72, 170, 377, 485
HphI GGTGA 7 cut(s) 101, 184, 206, 270, 350, 613, 711
Hpy166II GTNNAC 4 cut(s) 18, 566, 853, 1177
Hpy188I TCNGA 6 cut(s) 7, 445, 1062, 1103, 1169, 1371
Hpy188III TCNNGA 7 cut(s) 72, 983, 1047, 1076, 1282, 1300, 1325
Hpy8I GTNNAC 4 cut(s) 18, 566, 853, 1177
Hpy99I CGWCG 1 cut(s) 1130
HpyCH4III ACNGT 4 cut(s) 113, 338, 591, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 965, 1439
HpyF3I CTNAG 2 cut(s) 1142, 1326
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 4 cut(s) 53, 194, 647, 1260
Kpn2I TCCGGA 1 cut(s) 71
Kzo9I GATC 6 cut(s) 211, 409, 445, 716, 785, 1362
LmnI GCTCC 7 cut(s) 16, 64, 418, 998, 1073, 1334, 1414
Lsp1109I GCAGC 8 cut(s) 313, 392, 730, 943, 1013, 1349, 1417, 1420
LweI GCATC 5 cut(s) 328, 923, 976, 1055, 1396
MaeI CTAG 3 cut(s) 299, 1275, 1424
MaeIII GTNAC 4 cut(s) 107, 301, 338, 619
MalI GATC 6 cut(s) 213, 411, 447, 718, 787, 1364
MboI GATC 6 cut(s) 211, 409, 445, 716, 785, 1362
MboII GAAGA 4 cut(s) 1029, 1114, 1128, 1274
MfeI CAATTG 2 cut(s) 1010, 1194
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 1060
MmeI TCCRAC 3 cut(s) 1312, 1362, 1383
MnlI CCTC 8 cut(s) 228, 322, 733, 887, 1099, 1192, 1321, 1384
Mph1103I ATGCAT 1 cut(s) 192
MroI TCCGGA 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 869
MseI TTAA 3 cut(s) 333, 615, 1035
MslI CAYNNNNRTG 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 661
MspI CCGG 4 cut(s) 72, 170, 377, 485
MspR9I CCNGG 3 cut(s) 129, 134, 485
MunI CAATTG 2 cut(s) 1010, 1194
MvaI CCWGG 2 cut(s) 129, 134
MwoI GCNNNNNNNGC 2 cut(s) 965, 1439
NciI CCSGG 1 cut(s) 485
NdeII GATC 6 cut(s) 211, 409, 445, 716, 785, 1362
NlaIII CATG 4 cut(s) 53, 194, 647, 1260
NlaIV GGNNCC 1 cut(s) 1110
NmuCI GTSAC 3 cut(s) 107, 338, 619
NsiI ATGCAT 1 cut(s) 192
NspI RCATGY 1 cut(s) 1260
OliI CACNNNNGTG 1 cut(s) 845
PaqCI CACCTGC 2 cut(s) 632, 979
PciI ACATGT 1 cut(s) 1256
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 869
PfeI GAWTC 3 cut(s) 97, 358, 692
PkrI GCNGC 9 cut(s) 328, 382, 433, 745, 958, 1003, 1339, 1432, 1435
PscI ACATGT 1 cut(s) 1256
PsiI TTATAA 2 cut(s) 782, 921
Psp6I CCWGG 2 cut(s) 127, 132
PspEI GGTNACC 2 cut(s) 107, 619
PspFI CCCAGC 1 cut(s) 1090
PspGI CCWGG 2 cut(s) 127, 132
PspN4I GGNNCC 1 cut(s) 1110
PspPI GGNCC 4 cut(s) 295, 499, 538, 1109
PstI CTGCAG 1 cut(s) 847
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 661
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
RseI CAYNNNNRTG 1 cut(s) 845
SalI GTCGAC 1 cut(s) 564
SaqAI TTAA 3 cut(s) 333, 615, 1035
SatI GCNGC 9 cut(s) 327, 381, 432, 744, 957, 1002, 1338, 1431, 1434
Sau3AI GATC 6 cut(s) 211, 409, 445, 716, 785, 1362
Sau96I GGNCC 4 cut(s) 295, 499, 538, 1109
ScaI AGTACT 1 cut(s) 675
ScrFI CCNGG 3 cut(s) 129, 134, 485
SduI GDGCHC 1 cut(s) 1060
SfaNI GCATC 5 cut(s) 328, 923, 976, 1055, 1396
SfcI CTRYAG 1 cut(s) 843
SgrAI CRCCGGYG 1 cut(s) 169
SinI GGWCC 2 cut(s) 295, 1109
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 1298
SmoI CTYRAG 1 cut(s) 1298
SsiI CCGC 4 cut(s) 125, 167, 207, 432
SspI AATATT 2 cut(s) 396, 613
SspMI CTAG 3 cut(s) 299, 1275, 1424
StyD4I CCNGG 3 cut(s) 127, 132, 483
StyI CCWWGG 1 cut(s) 1437
TaaI ACNGT 4 cut(s) 113, 338, 591, 735
TaqI TCGA 3 cut(s) 565, 576, 715
TaqII GACCGA 1 cut(s) 1126
TatI WGTACW 1 cut(s) 673
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 3 cut(s) 97, 358, 692
Tru1I TTAA 3 cut(s) 333, 615, 1035
Tru9I TTAA 3 cut(s) 333, 615, 1035
TscAI CASTG 4 cut(s) 468, 847, 852, 1419
TseFI GTSAC 3 cut(s) 107, 338, 619
TseI GCWGC 8 cut(s) 326, 380, 743, 956, 1001, 1337, 1430, 1433
Tsp45I GTSAC 3 cut(s) 107, 338, 619
TspDTI ATGAA 7 cut(s) 66, 207, 262, 518, 660, 900, 938
TspGWI ACGGA 2 cut(s) 35, 308
TspRI CASTG 4 cut(s) 468, 847, 852, 1419
VpaK11BI GGWCC 2 cut(s) 295, 1109
XapI RAATTY 3 cut(s) 55, 268, 579
XceI RCATGY 1 cut(s) 1260
XmiI GTMKAC 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 869
XspI CTAG 3 cut(s) 299, 1275, 1424
ZrmI AGTACT 1 cut(s) 675
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.