Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0020805

Physical Location & Seq

Genomic Coordinates Reverse (-)

65934042 .. 65952044

Gene Structure 18003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG407100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCCTCCGACGACCTCTCCTTCGTGTCCACCACCGCTGCTACAAGAGCCCCAAGGCCTGGCCTGTTCGCGTTGTTCCTCTACCACATGTTTCTCGCTCCTCGATCTCATGTTGACTTTCTCTGTATTATCTCTAAGCTTTCAAGTTTCAATCTCTTCCTTCTATCTTCTTTCTCTCAGGTCTTCCATCTCTTTTCTTCTCTCTGCTTGCTTTGGACCATTGGCATCACCAACTACAATCGGAGGTCCGAGTTCGACTCGGACTCTCGCAACATGTCGGACTCGGCGGCGTTCTTCGAGTTGTTGTCCGACGCCGTCAGTGTTGGGCAGAAGCCGGTGGTGGAAGTAGGGACTGAACCAGAGAAAAGGGAAGGTTCATATGAATGGCAAGTTCACAGTTCCATTGTCTGCAATCGGGACCTTCATCTTCAATCAAAGGTCGAAACAGTGTTAGACAGTGTAAAGTGGGATGACAAAGGTTTAGCAGTTGCAATAGCCCAAAATGTTGACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

171

Amino Acids

19.15

Weight (kDa)

5.25

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020805)

Species	Orthologous Gene IDs
rosa_samantha	Rh1AG421300 Rh1CG057500 Rh5BG407100 Rh7CG298500 Rh7CG492400 Rh7DG460500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	36, 287
AcyI	GRCGYC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	2 cut(s)	87, 273
AgsI	TTSAA	3 cut(s)	144, 151, 431
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
AoxI	GGCC	2 cut(s)	56, 61
ApeKI	GCWGC	1 cut(s)	38
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	216, 246, 418
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	3 cut(s)	216, 246, 418
BanII	GRGCYC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	195
BceAI	ACGGC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	39, 288
BlsI	GCNGC	2 cut(s)	40, 289
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	3 cut(s)	216, 246, 418
BmgT120I	GGNCC	3 cut(s)	216, 246, 418
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	58, 63
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	364, 431
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	364, 431
BsnI	GGCC	2 cut(s)	58, 63
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	104
BspACI	CCGC	2 cut(s)	36, 287
BspANI	GGCC	2 cut(s)	58, 63
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	1 cut(s)	104
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	398, 448, 458
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	135, 177
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	2 cut(s)	91, 277
BstSCI	CCNGG	1 cut(s)	58
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	58, 63
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	3 cut(s)	325, 453, 463
Cac8I	GCNNGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	216, 246, 418
CseI	GACGC	1 cut(s)	320
CviAII	CATG	4 cut(s)	88, 110, 274, 513
CviJI	RGCY	6 cut(s)	50, 58, 63, 139, 334, 497
CviKI_1	RGCY	6 cut(s)	50, 58, 63, 139, 334, 497
DdeI	CTNAG	2 cut(s)	135, 177
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	216, 246, 418
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	4 cut(s)	91, 113, 277, 516
FaiI	YATR	6 cut(s)	89, 111, 275, 379, 381, 514
FaqI	GGGAC	2 cut(s)	364, 431
FatI	CATG	4 cut(s)	87, 109, 273, 512
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	39, 288
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	39, 288
GluI	GCNGC	2 cut(s)	39, 288
HaeIII	GGCC	2 cut(s)	58, 63
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	320
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	4 cut(s)	91, 113, 277, 516
HincII	GTYRAC	2 cut(s)	115, 508
HindII	GTYRAC	2 cut(s)	115, 508
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	257, 263, 281
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	4 cut(s)	30, 115, 394, 508
Hpy188I	TCNGA	6 cut(s)	10, 243, 250, 262, 280, 310
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	4 cut(s)	30, 115, 394, 508
Hpy99I	CGWCG	2 cut(s)	14, 314
HpyAV	CCTTC	4 cut(s)	31, 170, 365, 431
HpyCH4III	ACNGT	3 cut(s)	398, 448, 458
HpyCH4V	TGCA	2 cut(s)	411, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	135, 177
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	91, 113, 277, 516
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	45, 72, 77, 164, 348, 372
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	234
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	6 cut(s)	148, 159, 175, 189, 286, 419
MhlI	GDGCHC	1 cut(s)	52
MlyI	GAGTC	3 cut(s)	251, 257, 275
MmeI	TCCRAC	3 cut(s)	33, 258, 333
MnlI	CCTC	5 cut(s)	16, 26, 89, 111, 237
MslI	CAYNNNNRTG	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	4 cut(s)	91, 113, 277, 516
NlaIV	GGNNCC	1 cut(s)	419
NmeAIII	GCCGAG	1 cut(s)	263
NspI	RCATGY	2 cut(s)	91, 277
PceI	AGGCCT	1 cut(s)	58
PciI	ACATGT	2 cut(s)	87, 273
PflFI	GACNNNGTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	40, 289
PleI	GAGTC	3 cut(s)	251, 257, 275
PpsI	GAGTC	3 cut(s)	251, 257, 275
PpuMI	RGGWCCY	1 cut(s)	418
PscI	ACATGT	2 cut(s)	87, 273
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	3 cut(s)	216, 246, 418
PspPPI	RGGWCCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	382
SatI	GCNGC	2 cut(s)	39, 288
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	3 cut(s)	216, 246, 418
SchI	GAGTC	3 cut(s)	251, 257, 275
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	8 cut(s)	18, 141, 183, 248, 376, 423, 441, 481
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	3 cut(s)	216, 246, 418
SmiMI	CAYNNNNRTG	1 cut(s)	382
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	36, 287
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	3 cut(s)	398, 448, 458
TaqI	TCGA	4 cut(s)	103, 255, 297, 441
TauI	GCSGC	1 cut(s)	290
TscAI	CASTG	3 cut(s)	325, 453, 463
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	366, 396, 413
TspRI	CASTG	3 cut(s)	325, 453, 463
Tth111I	GACNNNGTC	1 cut(s)	314
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	3 cut(s)	216, 246, 418
XceI	RCATGY	2 cut(s)	91, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.