Rh7CG298500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020805
Physical Location & Seq
Reverse (-)
30674357 .. 30674816
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG298500.1

Sequence Viewer

Length: 345 bp
ATGGCCTCCGACGACCTCTCCTTCGTGTCCACCACCGCTGCTACAAGAGCCCCAAGGCCTGGCCTGTCTTCCATCTCTTTTCTTCTCTCTGCTTGCTTTGGACCATTGGCATCACCAACTACAATCGGAGGTCCGAGTTCGACTCGGACTCTCGCAACATGTCGGACTCGGCGGCGTTCTTCGAGTTGTTGTGTCAGCGCCAGGAGGATAAAATCTGGGGGTGTTCGTCTTCTTCGAGACCAAATTGGCAATCGCCCTAACACCCAAACACCTCCAAGCTTGGCGTCGAGAAATTCGATAGTGGCAATGGTGGCCGCTTCTCACAACCTCATTTACCCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

11.92

Weight (kDa)

11.66

Isoelectric Point (pI)

63.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020805)

Species Orthologous Gene IDs
rosa_samantha Rh1AG421300 Rh1CG057500 Rh5BG407100 Rh7CG298500 Rh7CG492400 Rh7DG460500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 59
AciI CCGC 3 cut(s) 36, 172, 315
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 158
AjnI CCWGG 2 cut(s) 58, 200
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 231
AoxI GGCC 4 cut(s) 3, 56, 61, 312
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 101, 131
AsuHPI GGTGA 1 cut(s) 105
AvaII GGWCC 2 cut(s) 101, 131
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 2 cut(s) 60, 221
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 60, 202
BcoDI GTCTC 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 3 cut(s) 39, 173, 315
BlsI GCNGC 3 cut(s) 40, 174, 316
Bme1390I CCNGG 2 cut(s) 60, 202
Bme18I GGWCC 2 cut(s) 101, 131
BmgT120I GGNCC 2 cut(s) 101, 131
BmrFI CCNGG 2 cut(s) 60, 202
BmsI GCATC 1 cut(s) 119
BpiI GAAGAC 2 cut(s) 60, 221
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BsaHI GRCGYC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 53
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 2 cut(s) 60, 202
BseDI CCNNGG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 4 cut(s) 5, 58, 63, 314
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 4 cut(s) 5, 58, 63, 314
Bso31I GGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 52
BspACI CCGC 3 cut(s) 36, 172, 315
BspANI GGCC 4 cut(s) 5, 58, 63, 314
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 53
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 60, 202
BstACI GRCGYC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstMAI GTCTC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 47, 311
BstNI CCWGG 2 cut(s) 60, 202
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 58, 200
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 2 cut(s) 60, 221
BsuRI GGCC 4 cut(s) 5, 58, 63, 314
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 101, 131
CseI GACGC 1 cut(s) 273
CviAII CATG 1 cut(s) 159
CviJI RGCY 7 cut(s) 5, 50, 58, 63, 279, 314, 341
CviKI_1 RGCY 7 cut(s) 5, 50, 58, 63, 279, 314, 341
EaeI YGGCCR 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 101, 131
EcoRII CCWGG 2 cut(s) 58, 200
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 1 cut(s) 162
FaiI YATR 1 cut(s) 160
FatI CATG 1 cut(s) 158
Fnu4HI GCNGC 3 cut(s) 39, 173, 315
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 39, 173, 315
GlaI GCGC 1 cut(s) 199
GluI GCNGC 3 cut(s) 39, 173, 315
GsaI CCCAGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 4 cut(s) 5, 58, 63, 314
HgaI GACGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 1 cut(s) 162
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 3 cut(s) 142, 148, 166
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 5 cut(s) 10, 128, 135, 147, 165
Hpy188III TCNNGA 2 cut(s) 236, 288
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 14, 289
HpyAV CCTTC 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 311
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 1 cut(s) 162
HspAI GCGC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 45, 72, 77, 187, 201, 214
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 119
MboII GAAGA 5 cut(s) 60, 74, 171, 221, 224
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 2 cut(s) 243, 292
MlyI GAGTC 3 cut(s) 136, 142, 160
MmeI TCCRAC 2 cut(s) 33, 143
MnlI CCTC 6 cut(s) 16, 26, 122, 198, 282, 338
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 60, 202
MvaI CCWGG 2 cut(s) 60, 202
MwoI GCNNNNNNNGC 2 cut(s) 47, 311
NlaIII CATG 1 cut(s) 162
NmeAIII GCCGAG 1 cut(s) 148
NspI RCATGY 1 cut(s) 162
PceI AGGCCT 1 cut(s) 58
PciI ACATGT 1 cut(s) 158
PcsI WCGNNNNNNNCGW 2 cut(s) 232, 293
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 3 cut(s) 40, 174, 316
PleI GAGTC 3 cut(s) 136, 142, 160
PpsI GAGTC 3 cut(s) 136, 142, 160
PscI ACATGT 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 58, 200
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 2 cut(s) 58, 200
PspPI GGNCC 2 cut(s) 101, 131
SatI GCNGC 3 cut(s) 39, 173, 315
Sau96I GGNCC 2 cut(s) 101, 131
SchI GAGTC 3 cut(s) 136, 142, 160
ScrFI CCNGG 2 cut(s) 60, 202
SduI GDGCHC 1 cut(s) 52
SetI ASST 5 cut(s) 18, 133, 274, 281, 330
SfaNI GCATC 1 cut(s) 119
SinI GGWCC 2 cut(s) 101, 131
Sse9I AATT 2 cut(s) 243, 292
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 3 cut(s) 36, 172, 315
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 58, 200
StyI CCWWGG 1 cut(s) 53
TaqI TCGA 5 cut(s) 140, 182, 235, 287, 296
TasI AATT 2 cut(s) 243, 292
TauI GCSGC 2 cut(s) 175, 317
TseI GCWGC 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 101, 131
XapI RAATTY 1 cut(s) 292
XceI RCATGY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.