Rh7CG492400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0020805
Physical Location & Seq
Reverse (-)
66188239 .. 66188773
535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG492400.1

Sequence Viewer

Length: 459 bp
ATGGCCTCCGACGACCTCTCCTCCGTGTCCACCACCGCTGCTACAAGAGCCCCAAGGCCTGGCCCGCTCGCGTTGTTCCTCTGCCACATGTCTGCCATCTCTGTTCTTCTCTCTGCCTGCTTTGCACCATTGGCATCACCAACTACAATCGGAGGTCCGAGTTCGACTCGGACTCGGACTCTCGCAACATGTTGGACTCGGCGGCGTTCTTCGAGTTACTGTGTCAGCGGCAGGCGGATAAAATCTGGGGGTGTTCGTCTTCTTCGAGCTCAAATTGGCGATCGCCCTAACGCCCAAACACCGCCAAGCTTGGCATCGAGAAATTCGATAGTGGCAATGGTGGCTGCTTCACCCACCGCTTCTCACAACCTCATTTACCCAGCCTACAACTTCTCTGTCATCGAGTATTTTCATCGCTTTCCCGCGACAACATCACATCCTTTGGGTCTAATTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.15

Weight (kDa)

11.06

Isoelectric Point (pI)

64.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020805)

Species Orthologous Gene IDs
rosa_samantha Rh1AG421300 Rh1CG057500 Rh5BG407100 Rh7CG298500 Rh7CG492400 Rh7DG460500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 59
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 2 cut(s) 71, 425
AciI CCGC 8 cut(s) 36, 65, 202, 228, 235, 302, 357, 423
AcsI RAATTY 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 2 cut(s) 87, 188
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 269, 309
AluI AGCT 2 cut(s) 269, 309
Alw21I GWGCWC 1 cut(s) 271
AoxI GGCC 3 cut(s) 3, 56, 61
ApeKI GCWGC 2 cut(s) 38, 344
ApoI RAATTY 1 cut(s) 322
AsiSI GCGATCGC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 62, 155
AsuHPI GGTGA 2 cut(s) 129, 342
AvaII GGWCC 1 cut(s) 155
BanII GRGCYC 2 cut(s) 52, 271
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 25, 331
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 60
BisI GCNGC 4 cut(s) 39, 203, 229, 345
BlsI GCNGC 4 cut(s) 40, 204, 230, 346
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 62, 155
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 143, 323
BpiI GAAGAC 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BsaJI CCNNGG 1 cut(s) 53
BsaXI ACNNNNNCTCC 3 cut(s) 5, 32, 35
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 25, 331
BseYI CCCAGC 1 cut(s) 379
Bsh1236I CGCG 2 cut(s) 71, 425
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 3 cut(s) 5, 58, 63
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 3 cut(s) 5, 58, 63
Bsp1286I GDGCHC 2 cut(s) 52, 271
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 8 cut(s) 36, 65, 202, 228, 235, 302, 357, 423
BspANI GGCC 3 cut(s) 5, 58, 63
BspFNI CGCG 2 cut(s) 71, 425
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 65, 69, 118, 233
BstF5I GGATG 1 cut(s) 436
BstFNI CGCG 2 cut(s) 71, 425
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 5 cut(s) 47, 64, 122, 131, 341
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 2 cut(s) 91, 192
BstSCI CCNGG 1 cut(s) 58
BstUI CGCG 2 cut(s) 71, 425
BstV1I GCAGC 2 cut(s) 25, 331
BstV2I GAAGAC 1 cut(s) 251
BsuRI GGCC 3 cut(s) 5, 58, 63
BtgZI GCGATG 1 cut(s) 398
BtsCI GGATG 1 cut(s) 436
Cac8I GCNNGC 4 cut(s) 65, 69, 118, 233
Cfr13I GGNCC 2 cut(s) 62, 155
CviAII CATG 2 cut(s) 88, 189
CviJI RGCY 8 cut(s) 5, 50, 58, 63, 269, 309, 344, 383
CviKI_1 RGCY 8 cut(s) 5, 50, 58, 63, 269, 309, 344, 383
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 250
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 58
Eco24I GRGCYC 2 cut(s) 52, 271
Eco47I GGWCC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 2 cut(s) 52, 271
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 2 cut(s) 91, 192
FaiI YATR 2 cut(s) 89, 190
FatI CATG 2 cut(s) 87, 188
FauI CCCGC 2 cut(s) 72, 430
Fnu4HI GCNGC 4 cut(s) 39, 203, 229, 345
FokI GGATG 1 cut(s) 423
FriOI GRGCYC 2 cut(s) 52, 271
Fsp4HI GCNGC 4 cut(s) 39, 203, 229, 345
GluI GCNGC 4 cut(s) 39, 203, 229, 345
GsaI CCCAGC 1 cut(s) 383
HaeIII GGCC 3 cut(s) 5, 58, 63
Hin1II CATG 2 cut(s) 91, 192
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 4 cut(s) 166, 172, 178, 196
HphI GGTGA 2 cut(s) 129, 342
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 5 cut(s) 10, 152, 159, 171, 177
Hpy188III TCNNGA 1 cut(s) 318
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 64, 122, 131, 341
Hsp92II CATG 2 cut(s) 91, 192
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 6 cut(s) 45, 72, 130, 217, 231, 393
Lsp1109I GCAGC 2 cut(s) 25, 331
LweI GCATC 2 cut(s) 143, 323
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 282
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 280
MboII GAAGA 4 cut(s) 98, 201, 251, 254
MhlI GDGCHC 2 cut(s) 52, 271
MluCI AATT 3 cut(s) 273, 322, 450
MlyI GAGTC 4 cut(s) 160, 166, 172, 190
MmeI TCCRAC 2 cut(s) 33, 173
MnlI CCTC 6 cut(s) 16, 26, 31, 89, 146, 380
MspA1I CMGCKG 2 cut(s) 38, 228
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 2 cut(s) 71, 425
MwoI GCNNNNNNNGC 5 cut(s) 47, 64, 122, 131, 341
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 91, 192
NmeAIII GCCGAG 1 cut(s) 178
NspI RCATGY 2 cut(s) 91, 192
PceI AGGCCT 1 cut(s) 58
PciI ACATGT 2 cut(s) 87, 188
PcsI WCGNNNNNNNCGW 2 cut(s) 262, 323
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 4 cut(s) 40, 204, 230, 346
Ple19I CGATCG 1 cut(s) 283
PleI GAGTC 4 cut(s) 160, 166, 172, 190
PpsI GAGTC 4 cut(s) 160, 166, 172, 190
PscI ACATGT 2 cut(s) 87, 188
Psp124BI GAGCTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 2 cut(s) 62, 155
PvuI CGATCG 1 cut(s) 283
RgaI GCGATCGC 1 cut(s) 283
SacI GAGCTC 1 cut(s) 271
SatI GCNGC 4 cut(s) 39, 203, 229, 345
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 2 cut(s) 62, 155
SchI GAGTC 4 cut(s) 160, 166, 172, 190
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 2 cut(s) 52, 271
SetI ASST 5 cut(s) 18, 157, 271, 311, 372
SfaAI GCGATCGC 1 cut(s) 283
SfaNI GCATC 2 cut(s) 143, 323
SgfI GCGATCGC 1 cut(s) 283
SinI GGWCC 1 cut(s) 155
Sse9I AATT 3 cut(s) 273, 322, 450
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 8 cut(s) 36, 65, 202, 228, 235, 302, 357, 423
SstI GAGCTC 1 cut(s) 271
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 6 cut(s) 164, 212, 265, 317, 326, 402
TasI AATT 3 cut(s) 273, 322, 450
TauI GCSGC 2 cut(s) 205, 231
TseI GCWGC 2 cut(s) 38, 344
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 1 cut(s) 322
XceI RCATGY 2 cut(s) 91, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.