Rh5CG233200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0020682
Physical Location & Seq
Reverse (-)
24221359 .. 24227401
6043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG233200.1

Sequence Viewer

Length: 468 bp
ATGCGCTCCAAAACAAGTGATGGGTGGAGGTCAATAGTAGAAAGTAGCATATGGAATTTTCCTGGAGGAGATACAAAAATCTTGTCAATTTTAAAGTTGAGTTTTAATGATCTGAAATCACCAGCTCTAAAACAGTGTTTTGCATTCTGCTCTAACTTTGTCAAAGATTTTGAATTCGAGAGGGAGGACTTAATTCGACTTTGGATGGCTCAAGGATGGCTACATCATTTTTCTACTGAGGAAAGCAATCTAGATATGGAAGATATAGGTGCTGAATATTTTGCAGCTGGACACGATTCTCTATTTTGTTATCAAGGATTTTGTTGGCAACTTCAAAAATTTGGTTGTGTTGGACTACAAAGGAACTTAGCCATCAAATCTGAGAGCTTGGCCGTCGTATATGGGCTGAATCCTACGTGTTACGGAGCTTCAATTCCATGCTTTGGGGAACTCCCTCCCCATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

155

Amino Acids

17.61

Weight (kDa)

5.52

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 53 - 95 7.8e-10 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020682)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024431
rosa_roxburghii Rroxscaffold_6G00412800
rosa_samantha Rh3AG143000 Rh3BG165400 Rh5CG030200 Rh5CG233200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 3 cut(s) 55, 173, 338
AfiI CCNNNNNNNGG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 3 cut(s) 173, 335, 432
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 4 cut(s) 125, 287, 387, 428
AluI AGCT 4 cut(s) 125, 287, 387, 428
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 3 cut(s) 55, 173, 338
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 111
BbvI GCAGC 1 cut(s) 296
BccI CCATC 4 cut(s) 14, 199, 210, 380
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 63
BfaI CTAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 417
Bsc4I CCNNNNNNNGG 1 cut(s) 443
BseBI CCWGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 210, 221
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 2 cut(s) 228, 372
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 443
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 1 cut(s) 392
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 2 cut(s) 229, 373
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 237, 367, 381
BstF5I GGATG 2 cut(s) 210, 221
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 392
BtsCI GGATG 2 cut(s) 210, 221
BtsIMutI CAGTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 6
CviAII CATG 1 cut(s) 438
CviJI RGCY 9 cut(s) 125, 209, 220, 287, 371, 387, 392, 406, 428
CviKI_1 RGCY 9 cut(s) 125, 209, 220, 287, 371, 387, 392, 406, 428
DdeI CTNAG 3 cut(s) 237, 367, 381
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DraI TTTAAA 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 441
FaiI YATR 8 cut(s) 50, 52, 257, 266, 400, 402, 439, 462
FatI CATG 1 cut(s) 437
FauNDI CATATG 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 2 cut(s) 217, 228
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 1 cut(s) 392
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 441
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 296, 409
HphI GGTGA 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 114, 382
Hpy188III TCNNGA 2 cut(s) 178, 251
Hpy99I CGWCG 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 143, 284
HpyF3I CTNAG 3 cut(s) 237, 367, 381
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 1 cut(s) 441
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 11, 425
LpnPI CCDG 4 cut(s) 48, 75, 135, 273
Lsp1109I GCAGC 1 cut(s) 296
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 419
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 272
MluCI AATT 6 cut(s) 55, 87, 173, 192, 338, 432
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 6 cut(s) 21, 59, 174, 178, 232, 465
MseI TTAA 3 cut(s) 92, 105, 191
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 63
NdeI CATATG 1 cut(s) 50
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 441
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 296, 409
PflMI CCANNNNNTGG 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 287
SaqAI TTAA 3 cut(s) 92, 105, 191
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 63
SetI ASST 7 cut(s) 32, 127, 271, 289, 389, 419, 430
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 6 cut(s) 55, 87, 173, 192, 338, 432
SspI AATATT 1 cut(s) 278
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 177, 196
TasI AATT 6 cut(s) 55, 87, 173, 192, 338, 432
TfiI GAWTC 2 cut(s) 296, 409
Tru1I TTAA 3 cut(s) 92, 105, 191
Tru9I TTAA 3 cut(s) 92, 105, 191
TscAI CASTG 1 cut(s) 140
TseI GCWGC 1 cut(s) 284
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 1 cut(s) 140
Van91I CCANNNNNTGG 1 cut(s) 443
XapI RAATTY 3 cut(s) 55, 173, 338
XbaI TCTAGA 1 cut(s) 250
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.