Rh5DG574700

Belongs to the pyruvate kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
88174282 .. 88177355
3074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG574700.1

Sequence Viewer

Length: 1167 bp
ATGATCTGCATGAGCTACAAAAAGTTGGCTGAGGATGTCAAGCCAGGGAGCATGATACTGTGTGCTGATGGTACCATCTCATTTTTGGCTTTATCTTGTGACAAAGTAAAGGGCCTCGTCAGATGCCGATGTGAGAACTCTGCCATGCTTGGTGAGAGAAAGAATGTTAATCTTCCAGGGGTCGTTGTGGATCTCCCTACCTTAACAGAAAAAGACAAAGAAGATATTCTCAAGTGGGGGATTCCAAACAAGATTGACATGATTGCTCTGTCTTTTGTTCGGAAAGGTTCAGATCTAGTGGAGGTTCGCAAGCTCCTTGGAAAGCATGCTAAGAACATCCTTCTCATGTCAAAGGTGGAGAATCAGGAAGGAGTCGCAAACTTTGATGATATCCTTGCAAATTCAGATGCATTCATGGTGGCACGAGGTGATCTTGGAATGGAAATTCCAATTGAAAAGATCTTTCTGGCTCAGAAAGTGATGATCTATAAGTGCAACATCCAAGGAAAACCTGTTGTCACGGCAACACAGATGTTGGAATCAATGATCAAGTCTCCCCGTCCAACTAGGGCTGAAGCTACTGATGTTGCAAATGCGGTTCTAGATGGCACAGACTGTGTGATGTTAAGTGGTGAGACTGCTGCTGGAGCTTATCCTGAACTTGCAGTCCGCACCATGGCAAAAATATGCGTAGAAGCAGAAAGCACCCTTCACTATGGAGATGTCTTCAAAAGGATTATGGAGCACTCCCCGGTGCCCATGAGCCCATTAGAGAGCCTGGCTTCTTCTGCCGTTAAAACAGCCAACTCATCCAAAGCAGCTCTAATTTTGGTCTTAACCAGAGGAGGAAGTACTGCAAAACTAGTGGCCAAGTACAGGCCAGGCATGCCTATACTGTCTGTTGTTGTCCCTGAGATTAAGACTGACTCTTTCGACTGGTCATGCAGTGATGAAGCTCCAGCAAGGCATAGTCTAATTTTCCGTGGTTTGGTTCCAGTCTTAAGTGCAGGATCATCTAGGGCCTCTCATGCAGAAACAACTGAAGAAGCTCTGGAGTTTGCCATTCAACATGCTAAGGCAAAGGGACTGTGCAAGAATGGAGATGCTGTTGTGGCTCTGCACCGTGATGGAAATGCATCTGTGATCAAGATCTTGACTGTGAAGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

41.8

Weight (kDa)

8.24

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 1 - 223 8.4e-103 Pyruvate kinase, barrel domain
PK_C PF02887 258 - 376 6.7e-23 Pyruvate kinase, alpha/beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26390 AT5G56350
fragaria_vesca FvH4_3g45920 FvH4_3g45920 FvH4_3g45920
malus_domestica MD03G1001700.v1.1
prunus_persica Prupe.6G001600_v2.0.a1
pyrus_communis pycom11g00160
rosa_chinensis RchiOBHm_Chr5g0084031
rosa_laevigata RLG00000037074
rosa_multiflora Rmu_ssc0000372.1_g000083
rosa_roxburghii Rroxscaffold_1G00000630
rosa_rugosa Rorug05G0488500
rosa_samantha Rh5BG566400 Rh5DG574700
rosa_wichuraiana Rw5G050320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 2 cut(s) 71, 754
AciI CCGC 2 cut(s) 596, 670
AclWI GGATC 2 cut(s) 198, 1018
AcoI YGGCCR 1 cut(s) 867
AcsI RAATTY 2 cut(s) 400, 444
AcuI CTGAAG 2 cut(s) 594, 1062
AdeI CACNNNGTG 1 cut(s) 428
AfaI GTAC 3 cut(s) 73, 853, 875
AfiI CCNNNNNNNGG 3 cut(s) 676, 876, 988
AflII CTTAAG 1 cut(s) 1000
AgsI TTSAA 3 cut(s) 455, 730, 1067
AhlI ACTAGT 1 cut(s) 862
AjnI CCWGG 4 cut(s) 43, 175, 777, 880
AloI GAACNNNNNNTCC 2 cut(s) 651, 683
AluBI AGCT 7 cut(s) 15, 313, 578, 650, 821, 956, 1049
AluI AGCT 7 cut(s) 15, 313, 578, 650, 821, 956, 1049
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 2 cut(s) 558, 629
AlwI GGATC 2 cut(s) 198, 1018
AoxI GGCC 4 cut(s) 112, 867, 878, 1020
ApeKI GCWGC 2 cut(s) 641, 818
ApoI RAATTY 2 cut(s) 400, 444
Asp700I GAANNNNTTC 1 cut(s) 225
Asp718I GGTACC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 112, 1020
AsuC2I CCSGG 1 cut(s) 752
AsuHPI GGTGA 3 cut(s) 164, 440, 644
BaeGI GKGCMC 1 cut(s) 759
BalI TGGCCA 1 cut(s) 869
BanI GGYRCC 2 cut(s) 71, 754
BanII GRGCYC 1 cut(s) 767
BauI CACGAG 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 1 cut(s) 747
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 628, 830
BccI CCATC 4 cut(s) 62, 83, 599, 1121
BceAI ACGGC 2 cut(s) 537, 776
BciT130I CCWGG 4 cut(s) 45, 177, 779, 882
BclI TGATCA 2 cut(s) 546, 1143
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 2 cut(s) 558, 629
BcuI ACTAGT 1 cut(s) 862
BfaI CTAG 5 cut(s) 296, 567, 602, 863, 1017
BfrI CTTAAG 1 cut(s) 1000
BglII AGATCT 3 cut(s) 292, 459, 1149
BisI GCNGC 2 cut(s) 642, 819
BlsI GCNGC 2 cut(s) 643, 820
BmcAI AGTACT 1 cut(s) 853
Bme1390I CCNGG 5 cut(s) 45, 177, 752, 779, 882
BmgT120I GGNCC 2 cut(s) 112, 1020
BmiI GGNNCC 3 cut(s) 73, 756, 993
BmrFI CCNGG 5 cut(s) 45, 177, 752, 779, 882
BmsI GCATC 4 cut(s) 113, 397, 1093, 1145
BpiI GAAGAC 1 cut(s) 718
BpmI CTGGAG 3 cut(s) 666, 942, 1073
Bpu10I CCTNAGC 2 cut(s) 30, 1074
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 1148
BsaJI CCNNGG 7 cut(s) 44, 176, 316, 502, 675, 750, 982
BsaXI ACNNNNNCTCC 2 cut(s) 1092, 1122
Bsc4I CCNNNNNNNGG 3 cut(s) 676, 876, 988
Bse1I ACTGG 2 cut(s) 941, 995
Bse8I GATNNNNATC 1 cut(s) 1148
BseBI CCWGG 4 cut(s) 45, 177, 779, 882
BseDI CCNNGG 7 cut(s) 44, 176, 316, 502, 675, 750, 982
BseGI GGATG 4 cut(s) 40, 336, 498, 809
BseJI GATNNNNATC 1 cut(s) 1148
BseLI CCNNNNNNNGG 3 cut(s) 676, 876, 988
BseMII CTCAG 3 cut(s) 21, 485, 903
BseNI ACTGG 2 cut(s) 941, 995
BseRI GAGGAG 1 cut(s) 858
BseSI GKGCMC 1 cut(s) 759
BseXI GCAGC 2 cut(s) 628, 830
BsgI GTGCAG 2 cut(s) 1026, 1103
BshFI GGCC 4 cut(s) 114, 869, 880, 1022
BshNI GGYRCC 2 cut(s) 71, 754
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 1 cut(s) 752
BslFI GGGAC 2 cut(s) 893, 1098
BslI CCNNNNNNNGG 3 cut(s) 676, 876, 988
BsmAI GTCTC 2 cut(s) 558, 629
BsmFI GGGAC 2 cut(s) 893, 1098
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 4 cut(s) 114, 869, 880, 1022
Bsp1286I GDGCHC 3 cut(s) 747, 759, 767
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 2 cut(s) 596, 670
BspANI GGCC 4 cut(s) 114, 869, 880, 1022
BspCNI CTCAG 3 cut(s) 22, 484, 904
BspLI GGNNCC 3 cut(s) 73, 756, 993
BspPI GGATC 2 cut(s) 198, 1018
BspT107I GGYRCC 2 cut(s) 71, 754
BspTI CTTAAG 1 cut(s) 1000
BsrI ACTGG 2 cut(s) 941, 995
BssECI CCNNGG 7 cut(s) 44, 176, 316, 502, 675, 750, 982
BssSI CACGAG 1 cut(s) 423
BssT1I CCWWGG 3 cut(s) 316, 502, 675
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 4 cut(s) 45, 177, 779, 882
Bst4CI ACNGT 6 cut(s) 60, 617, 897, 1089, 1124, 1159
BstAFI CTTAAG 1 cut(s) 1000
BstC8I GCNNGC 3 cut(s) 311, 327, 887
BstDEI CTNAG 5 cut(s) 30, 330, 471, 912, 1074
BstDSI CCRYGG 2 cut(s) 675, 982
BstF5I GGATG 4 cut(s) 40, 336, 498, 809
BstMAI GTCTC 2 cut(s) 558, 629
BstMWI GCNNNNNNNGC 5 cut(s) 647, 788, 886, 1028, 1112
BstNI CCWGG 4 cut(s) 45, 177, 779, 882
BstNSI RCATGY 3 cut(s) 329, 889, 1073
BstSCI CCNGG 5 cut(s) 43, 175, 750, 777, 880
BstSLI GKGCMC 1 cut(s) 759
BstV1I GCAGC 2 cut(s) 628, 830
BstV2I GAAGAC 1 cut(s) 718
BstX2I RGATCY 4 cut(s) 190, 292, 459, 1149
BstYI RGATCY 4 cut(s) 190, 292, 459, 1149
BsuRI GGCC 4 cut(s) 114, 869, 880, 1022
BtgI CCRYGG 2 cut(s) 675, 982
BtsCI GGATG 4 cut(s) 40, 336, 498, 809
BtsI GCAGTG 1 cut(s) 952
BtsIMutI CAGTG 1 cut(s) 952
Cac8I GCNNGC 3 cut(s) 311, 327, 887
Cfr13I GGNCC 2 cut(s) 112, 1020
Csp6I GTAC 3 cut(s) 72, 852, 874
CspCI CAANNNNNGTGG 2 cut(s) 846, 881
CviQI GTAC 3 cut(s) 72, 852, 874
DdeI CTNAG 5 cut(s) 30, 330, 471, 912, 1074
DraIII CACNNNGTG 1 cut(s) 428
EaeI YGGCCR 1 cut(s) 867
Eco130I CCWWGG 3 cut(s) 316, 502, 675
Eco24I GRGCYC 1 cut(s) 767
Eco32I GATATC 1 cut(s) 391
Eco57I CTGAAG 2 cut(s) 594, 1062
EcoO109I RGGNCCY 2 cut(s) 112, 1020
EcoRII CCWGG 4 cut(s) 43, 175, 777, 880
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 3 cut(s) 316, 502, 675
EcoT22I ATGCAT 2 cut(s) 412, 1138
EcoT38I GRGCYC 1 cut(s) 767
ErhI CCWWGG 3 cut(s) 316, 502, 675
FaqI GGGAC 2 cut(s) 893, 1098
FbaI TGATCA 2 cut(s) 546, 1143
Fnu4HI GCNGC 2 cut(s) 642, 819
FokI GGATG 4 cut(s) 47, 323, 485, 796
FriOI GRGCYC 1 cut(s) 767
Fsp4HI GCNGC 2 cut(s) 642, 819
FspBI CTAG 5 cut(s) 296, 567, 602, 863, 1017
GluI GCNGC 2 cut(s) 642, 819
GsuI CTGGAG 3 cut(s) 666, 942, 1073
HaeIII GGCC 4 cut(s) 114, 869, 880, 1022
HapII CCGG 1 cut(s) 752
HinfI GANTC 5 cut(s) 241, 361, 372, 539, 926
HpaII CCGG 1 cut(s) 752
HphI GGTGA 3 cut(s) 164, 440, 644
Hpy188I TCNGA 5 cut(s) 122, 282, 292, 406, 474
Hpy188III TCNNGA 6 cut(s) 365, 602, 656, 1052, 1147, 1153
HpyAV CCTTC 3 cut(s) 350, 362, 719
HpyCH4III ACNGT 6 cut(s) 60, 617, 897, 1089, 1124, 1159
HpyF10VI GCNNNNNNNGC 5 cut(s) 647, 788, 886, 1028, 1112
HpyF3I CTNAG 5 cut(s) 30, 330, 471, 912, 1074
KpnI GGTACC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 546, 1143
LmnI GCTCC 5 cut(s) 48, 318, 647, 742, 961
Lsp1109I GCAGC 2 cut(s) 628, 830
LweI GCATC 4 cut(s) 113, 397, 1093, 1145
MaeI CTAG 5 cut(s) 296, 567, 602, 863, 1017
MaeIII GTNAC 2 cut(s) 98, 517
MboII GAAGA 5 cut(s) 164, 233, 718, 777, 1055
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 4 cut(s) 190, 292, 459, 1149
MhlI GDGCHC 3 cut(s) 747, 759, 767
MlsI TGGCCA 1 cut(s) 869
MluCI AATT 5 cut(s) 400, 444, 450, 825, 975
MluNI TGGCCA 1 cut(s) 869
MlyI GAGTC 2 cut(s) 381, 920
MmeI TCCRAC 2 cut(s) 516, 587
MnlI CCTC 7 cut(s) 25, 125, 295, 419, 836, 839, 1033
Mox20I TGGCCA 1 cut(s) 869
Mph1103I ATGCAT 2 cut(s) 412, 1138
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 1 cut(s) 869
MseI TTAA 7 cut(s) 168, 203, 626, 795, 836, 918, 1001
MslI CAYNNNNRTG 1 cut(s) 1125
Msp20I TGGCCA 1 cut(s) 869
MspCI CTTAAG 1 cut(s) 1000
MspI CCGG 1 cut(s) 752
MspR9I CCNGG 5 cut(s) 45, 177, 752, 779, 882
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 4 cut(s) 45, 177, 779, 882
MwoI GCNNNNNNNGC 5 cut(s) 647, 788, 886, 1028, 1112
NciI CCSGG 1 cut(s) 752
NcoI CCATGG 1 cut(s) 675
NlaIV GGNNCC 3 cut(s) 73, 756, 993
NmuCI GTSAC 2 cut(s) 98, 517
NsiI ATGCAT 2 cut(s) 412, 1138
NspI RCATGY 3 cut(s) 329, 889, 1073
PaeI GCATGC 2 cut(s) 329, 889
PctI GAATGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 3 cut(s) 241, 361, 539
PkrI GCNGC 2 cut(s) 643, 820
PleI GAGTC 2 cut(s) 380, 920
PpsI GAGTC 2 cut(s) 380, 920
Psp6I CCWGG 4 cut(s) 43, 175, 777, 880
PspGI CCWGG 4 cut(s) 43, 175, 777, 880
PspN4I GGNNCC 3 cut(s) 73, 756, 993
PspPI GGNCC 2 cut(s) 112, 1020
PsuI RGATCY 4 cut(s) 190, 292, 459, 1149
RsaI GTAC 3 cut(s) 73, 853, 875
RsaNI GTAC 3 cut(s) 72, 852, 874
RseI CAYNNNNRTG 1 cut(s) 1125
SaqAI TTAA 7 cut(s) 168, 203, 626, 795, 836, 918, 1001
SatI GCNGC 2 cut(s) 642, 819
Sau96I GGNCC 2 cut(s) 112, 1020
ScaI AGTACT 1 cut(s) 853
SchI GAGTC 2 cut(s) 381, 920
ScrFI CCNGG 5 cut(s) 45, 177, 752, 779, 882
SduI GDGCHC 3 cut(s) 747, 759, 767
SfaNI GCATC 4 cut(s) 113, 397, 1093, 1145
SmiMI CAYNNNNRTG 1 cut(s) 1125
SmlI CTYRAG 2 cut(s) 230, 1000
SmoI CTYRAG 2 cut(s) 230, 1000
SpeI ACTAGT 1 cut(s) 862
SphI GCATGC 2 cut(s) 329, 889
Sse9I AATT 5 cut(s) 400, 444, 450, 825, 975
SsiI CCGC 2 cut(s) 596, 670
SspMI CTAG 5 cut(s) 296, 567, 602, 863, 1017
StyD4I CCNGG 5 cut(s) 43, 175, 750, 777, 880
StyI CCWWGG 3 cut(s) 316, 502, 675
TaaI ACNGT 6 cut(s) 60, 617, 897, 1089, 1124, 1159
TaqI TCGA 1 cut(s) 933
TasI AATT 5 cut(s) 400, 444, 450, 825, 975
TatI WGTACW 2 cut(s) 851, 873
TfiI GAWTC 3 cut(s) 241, 361, 539
Tru1I TTAA 7 cut(s) 168, 203, 626, 795, 836, 918, 1001
Tru9I TTAA 7 cut(s) 168, 203, 626, 795, 836, 918, 1001
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 2 cut(s) 98, 517
TseI GCWGC 2 cut(s) 641, 818
Tsp45I GTSAC 2 cut(s) 98, 517
TspDTI ATGAA 2 cut(s) 403, 966
TspGWI ACGGA 1 cut(s) 971
TspRI CASTG 1 cut(s) 952
Vha464I CTTAAG 1 cut(s) 1000
XapI RAATTY 2 cut(s) 400, 444
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 3 cut(s) 329, 889, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 5 cut(s) 296, 567, 602, 863, 1017
ZrmI AGTACT 1 cut(s) 853
Zsp2I ATGCAT 2 cut(s) 412, 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.